MD11G1264400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0017211
Physical Location & Seq
Reverse (-)
37954722 .. 37955485
764 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1264400.v1.1.491

Sequence Viewer

Length: 189 bp
ATGGGTGGAGAAGAAATAGCGGGCCCACCAGCTCCGAAGGTCCTCCGTCTCCTCTATTTCGTCGGCGCCGGCTTTATTTGCACGGTTGGAATCAACAAGTGGCGCGAGATGCAGCGCAAGTCCATGGCTTTACAGCAACACCAGCAGCAGCAGCAGCTCCCCGAAAATGCCTCAAATGCCCTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.91

Weight (kDa)

7.94

Isoelectric Point (pI)

61.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16916 AT1G16916
malus_domestica MD11G1264400.v1.1
prunus_persica Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G164100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030781
rosa_multiflora Rmu_sc0004119.1_g000002 Rmu_sc0021923.1_g000003
rosa_roxburghii Rroxscaffold_1G00049540
rosa_samantha Rh5CG235300
rosa_wichuraiana Rw5G019490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 65
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 20
AcyI GRCGYC 1 cut(s) 66
AluBI AGCT 2 cut(s) 32, 157
AluI AGCT 2 cut(s) 32, 157
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 22
ApaI GGGCCC 1 cut(s) 26
ApeKI GCWGC 5 cut(s) 112, 145, 148, 151, 154
AspLEI GCGC 3 cut(s) 68, 105, 117
AspS9I GGNCC 3 cut(s) 22, 23, 40
AvaII GGWCC 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 1 cut(s) 65
BanII GRGCYC 1 cut(s) 26
BbvI GCAGC 5 cut(s) 124, 157, 160, 163, 166
BcoDI GTCTC 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 5 cut(s) 113, 146, 149, 152, 155
BlsI GCNGC 5 cut(s) 114, 147, 150, 153, 156
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 22, 23, 40
BmiI GGNNCC 2 cut(s) 24, 67
BmsI GCATC 1 cut(s) 99
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 5 cut(s) 124, 157, 160, 163, 166
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 69
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 24
Bsp120I GGGCCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 26
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 24
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 2 cut(s) 24, 67
BspT107I GGYRCC 1 cut(s) 65
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 123
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 22, 70
BstDSI CCRYGG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 105
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 3 cut(s) 68, 105, 117
BstMAI GTCTC 1 cut(s) 53
BstMWI GCNNNNNNNGC 6 cut(s) 78, 109, 142, 151, 154, 176
BstSLI GKGCMC 1 cut(s) 26
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 5 cut(s) 124, 157, 160, 163, 166
BsuRI GGCC 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 22, 70
CfoI GCGC 3 cut(s) 68, 105, 117
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 3 cut(s) 22, 23, 40
CviAII CATG 1 cut(s) 124
CviJI RGCY 5 cut(s) 24, 32, 72, 128, 157
CviKI_1 RGCY 5 cut(s) 24, 32, 72, 128, 157
DinI GGCGCC 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 26
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 53
FaeI CATG 1 cut(s) 127
FaiI YATR 1 cut(s) 125
FatI CATG 1 cut(s) 123
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 5 cut(s) 113, 146, 149, 152, 155
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 5 cut(s) 113, 146, 149, 152, 155
GlaI GCGC 3 cut(s) 67, 104, 116
GluI GCNGC 5 cut(s) 113, 146, 149, 152, 155
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 69
HhaI GCGC 3 cut(s) 68, 105, 117
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 3 cut(s) 66, 103, 115
HinP1I GCGC 3 cut(s) 66, 103, 115
HinfI GANTC 1 cut(s) 90
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 36
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 81, 112
HpyF10VI GCNNNNNNNGC 6 cut(s) 78, 109, 142, 151, 154, 176
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 3 cut(s) 66, 103, 115
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 68
KroNI GCCGGC 1 cut(s) 70
LmnI GCTCC 2 cut(s) 37, 162
LpnPI CCDG 3 cut(s) 42, 82, 155
Lsp1109I GCAGC 5 cut(s) 124, 157, 160, 163, 166
LweI GCATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 26
Mly113I GGCGCC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 3 cut(s) 53, 62, 181
MroNI GCCGGC 1 cut(s) 68
MspI CCGG 1 cut(s) 69
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 6 cut(s) 78, 109, 142, 151, 154, 176
NaeI GCCGGC 1 cut(s) 70
NarI GGCGCC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 123
NgoMIV GCCGGC 1 cut(s) 68
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 2 cut(s) 24, 67
PdiI GCCGGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 5 cut(s) 114, 147, 150, 153, 156
PluTI GGCGCC 1 cut(s) 69
PpuMI RGGWCCY 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 24, 67
PspOMI GGGCCC 1 cut(s) 22
PspPI GGNCC 3 cut(s) 22, 23, 40
PspPPI RGGWCCY 1 cut(s) 40
SatI GCNGC 5 cut(s) 113, 146, 149, 152, 155
Sau96I GGNCC 3 cut(s) 22, 23, 40
SduI GDGCHC 1 cut(s) 26
SetI ASST 3 cut(s) 34, 42, 159
SfaNI GCATC 1 cut(s) 99
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SsiI CCGC 1 cut(s) 20
SspDI GGCGCC 1 cut(s) 65
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 85
TfiI GAWTC 1 cut(s) 90
TseI GCWGC 5 cut(s) 112, 145, 148, 151, 154
TspGWI ACGGA 1 cut(s) 35
VpaK11BI GGWCC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.