Rroxscaffold_1G00049540

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
69766985 .. 69767662
678 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00049540.1

Sequence Viewer

Length: 186 bp
ATGACCGGAGAAGAACTAGCAGGCCCACCAGCGCCGAAGCTGCTTCGTCTGCTCTATTTCGTCGGCGCAGGCTTTATTTGCACTGTTGGGGTTAACAAATGGCGTGAGCTCCAGCGTAAGTCATTGAATTTGGAGCAGCAGAAGCAGCAGCAGCTAGCCCAAAATGCCGCAAATGCCCTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.78

Weight (kDa)

9.03

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017211)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 168
AcsI RAATTY 1 cut(s) 127
AgsI TTSAA 2 cut(s) 127, 182
AluBI AGCT 3 cut(s) 40, 109, 154
AluI AGCT 3 cut(s) 40, 109, 154
Alw21I GWGCWC 1 cut(s) 111
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 5 cut(s) 40, 136, 145, 148, 151
ApoI RAATTY 1 cut(s) 127
AspLEI GCGC 2 cut(s) 34, 68
AspS9I GGNCC 1 cut(s) 23
AsuNHI GCTAGC 1 cut(s) 154
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BbvI GCAGC 5 cut(s) 27, 148, 157, 160, 163
BfaI CTAG 2 cut(s) 17, 155
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 6 cut(s) 41, 137, 146, 149, 152, 168
BlsI GCNGC 6 cut(s) 42, 138, 147, 150, 153, 169
BmgT120I GGNCC 1 cut(s) 23
BmtI GCTAGC 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 95
BsaWI WCCGGW 1 cut(s) 5
BseXI GCAGC 5 cut(s) 27, 148, 157, 160, 163
BshFI GGCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 111
BsiSI CCGG 1 cut(s) 6
BsnI GGCC 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 111
BspACI CCGC 1 cut(s) 168
BspANI GGCC 1 cut(s) 24
BspOI GCTAGC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 3 cut(s) 22, 70, 156
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 68
BstMWI GCNNNNNNNGC 8 cut(s) 40, 49, 78, 142, 145, 151, 164, 173
BstV1I GCAGC 5 cut(s) 27, 148, 157, 160, 163
BsuRI GGCC 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 3 cut(s) 22, 70, 156
CfoI GCGC 2 cut(s) 34, 68
Cfr13I GGNCC 1 cut(s) 23
CviJI RGCY 6 cut(s) 24, 40, 72, 109, 154, 158
CviKI_1 RGCY 6 cut(s) 24, 40, 72, 109, 154, 158
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 111
Fnu4HI GCNGC 6 cut(s) 41, 137, 146, 149, 152, 168
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 6 cut(s) 41, 137, 146, 149, 152, 168
FspBI CTAG 2 cut(s) 17, 155
GlaI GCGC 2 cut(s) 33, 67
GluI GCNGC 6 cut(s) 41, 137, 146, 149, 152, 168
GsuI CTGGAG 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 34, 68
Hin6I GCGC 2 cut(s) 32, 66
HinP1I GCGC 2 cut(s) 32, 66
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HpaI GTTAAC 1 cut(s) 94
HpaII CCGG 1 cut(s) 6
Hpy166II GTNNAC 1 cut(s) 94
Hpy8I GTNNAC 1 cut(s) 94
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 81
HpyF10VI GCNNNNNNNGC 8 cut(s) 40, 49, 78, 142, 145, 151, 164, 173
HspAI GCGC 2 cut(s) 32, 66
KspAI GTTAAC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 114, 133
LpnPI CCDG 5 cut(s) 6, 19, 42, 54, 125
Lsp1109I GCAGC 5 cut(s) 27, 148, 157, 160, 163
MaeI CTAG 2 cut(s) 17, 155
MboII GAAGA 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 1 cut(s) 127
MseI TTAA 1 cut(s) 93
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 8 cut(s) 40, 49, 78, 142, 145, 151, 164, 173
NheI GCTAGC 1 cut(s) 154
PkrI GCNGC 6 cut(s) 42, 138, 147, 150, 153, 169
Psp124BI GAGCTC 1 cut(s) 111
PspPI GGNCC 1 cut(s) 23
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 6 cut(s) 41, 137, 146, 149, 152, 168
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 111
SetI ASST 3 cut(s) 42, 111, 156
SgeI CNNG 8 cut(s) 18, 29, 33, 41, 81, 116, 124, 167
Sse9I AATT 1 cut(s) 127
SsiI CCGC 1 cut(s) 168
SspMI CTAG 2 cut(s) 17, 155
SstI GAGCTC 1 cut(s) 111
TaaI ACNGT 1 cut(s) 85
TasI AATT 1 cut(s) 127
TauI GCSGC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TscAI CASTG 1 cut(s) 88
TseI GCWGC 5 cut(s) 40, 136, 145, 148, 151
TspRI CASTG 1 cut(s) 88
XapI RAATTY 1 cut(s) 127
XspI CTAG 2 cut(s) 17, 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.