Rmu_sc0004119.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004119.1
OG0017211
Physical Location & Seq
Forward (+)
865 .. 1281
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004119.1_g000002.1.cds

Sequence Viewer

Length: 309 bp
ctgagccgggtcgggtcggaattttataatagaattgggttcgggttcggggcaaaggtttttactgcccaattgggtttccccaattctcattctctaaagaagaagaagaagcagagagacatgaccggagaagaactagcgggcccaccagcgccgaagctgcttcgtctgctctatttcgtcggcgcaggctttatttgcactgttggggttaacaaatggcgtgagctccagcgcaagtccttgaatttggagcagcagaagcagcagcagctagcccaaaataccgcaaatgcccttgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.44

Weight (kDa)

10.14

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16916 AT1G16916
malus_domestica MD11G1264400.v1.1
prunus_persica Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G164100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030781
rosa_multiflora Rmu_sc0004119.1_g000002 Rmu_sc0021923.1_g000003
rosa_roxburghii Rroxscaffold_1G00049540
rosa_samantha Rh5CG235300
rosa_wichuraiana Rw5G019490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AciI CCGC 2 cut(s) 143, 291
AcsI RAATTY 2 cut(s) 20, 250
AgsI TTSAA 2 cut(s) 250, 305
AluBI AGCT 3 cut(s) 163, 232, 277
AluI AGCT 3 cut(s) 163, 232, 277
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 114
AoxI GGCC 1 cut(s) 145
ApaI GGGCCC 1 cut(s) 149
ApeKI GCWGC 5 cut(s) 163, 259, 268, 271, 274
ApoI RAATTY 2 cut(s) 20, 250
AspLEI GCGC 3 cut(s) 157, 191, 240
AspS9I GGNCC 2 cut(s) 145, 146
AsuC2I CCSGG 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 277
BaeGI GKGCMC 1 cut(s) 149
BanII GRGCYC 2 cut(s) 149, 234
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 5 cut(s) 150, 271, 280, 283, 286
BcnI CCSGG 1 cut(s) 8
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 2 cut(s) 140, 278
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 5 cut(s) 164, 260, 269, 272, 275
BlsI GCNGC 5 cut(s) 165, 261, 270, 273, 276
Bme1390I CCNGG 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 145, 146
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 8
BmtI GCTAGC 1 cut(s) 281
BpmI CTGGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 128
BseSI GKGCMC 1 cut(s) 149
BseXI GCAGC 5 cut(s) 150, 271, 280, 283, 286
BshFI GGCC 1 cut(s) 147
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 7, 129
BsmAI GTCTC 1 cut(s) 114
BsnI GGCC 1 cut(s) 147
Bsp120I GGGCCC 1 cut(s) 145
Bsp1286I GDGCHC 2 cut(s) 149, 234
BspACI CCGC 2 cut(s) 143, 291
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 147
BspOI GCTAGC 1 cut(s) 281
Bst4CI ACNGT 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 145, 193, 279
BstDEI CTNAG 1 cut(s) 2
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 3 cut(s) 157, 191, 240
BstMAI GTCTC 1 cut(s) 114
BstMWI GCNNNNNNNGC 6 cut(s) 163, 172, 201, 265, 268, 274
BstSCI CCNGG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 149
BstV1I GCAGC 5 cut(s) 150, 271, 280, 283, 286
BsuRI GGCC 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 145, 193, 279
CfoI GCGC 3 cut(s) 157, 191, 240
Cfr13I GGNCC 2 cut(s) 145, 146
CviAII CATG 1 cut(s) 124
CviJI RGCY 7 cut(s) 6, 147, 163, 195, 232, 277, 281
CviKI_1 RGCY 7 cut(s) 6, 147, 163, 195, 232, 277, 281
DdeI CTNAG 1 cut(s) 2
Ecl136II GAGCTC 1 cut(s) 232
Eco24I GRGCYC 2 cut(s) 149, 234
Eco53kI GAGCTC 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 232
EcoT38I GRGCYC 2 cut(s) 149, 234
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 27, 125
FatI CATG 1 cut(s) 123
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 5 cut(s) 164, 260, 269, 272, 275
FriOI GRGCYC 2 cut(s) 149, 234
Fsp4HI GCNGC 5 cut(s) 164, 260, 269, 272, 275
FspBI CTAG 2 cut(s) 140, 278
GlaI GCGC 3 cut(s) 156, 190, 239
GluI GCNGC 5 cut(s) 164, 260, 269, 272, 275
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 7, 129
HhaI GCGC 3 cut(s) 157, 191, 240
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 3 cut(s) 155, 189, 238
HinP1I GCGC 3 cut(s) 155, 189, 238
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 2 cut(s) 7, 129
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 19
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 204
HpyF10VI GCNNNNNNNGC 6 cut(s) 163, 172, 201, 265, 268, 274
HpyF3I CTNAG 1 cut(s) 2
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 3 cut(s) 155, 189, 238
KspAI GTTAAC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 237, 256
LpnPI CCDG 5 cut(s) 20, 142, 165, 177, 248
Lsp1109I GCAGC 5 cut(s) 150, 271, 280, 283, 286
MaeI CTAG 2 cut(s) 140, 278
MboII GAAGA 4 cut(s) 115, 118, 121, 146
MfeI CAATTG 1 cut(s) 71
MhlI GDGCHC 2 cut(s) 149, 234
MluCI AATT 5 cut(s) 20, 33, 71, 85, 250
MseI TTAA 1 cut(s) 216
MspI CCGG 2 cut(s) 7, 129
MspR9I CCNGG 1 cut(s) 8
MunI CAATTG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 163, 172, 201, 265, 268, 274
NciI CCSGG 1 cut(s) 8
NheI GCTAGC 1 cut(s) 277
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 147
PkrI GCNGC 5 cut(s) 165, 261, 270, 273, 276
PsiI TTATAA 1 cut(s) 27
Psp124BI GAGCTC 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 147
PspOMI GGGCCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 145, 146
SacI GAGCTC 1 cut(s) 234
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 5 cut(s) 164, 260, 269, 272, 275
Sau96I GGNCC 2 cut(s) 145, 146
ScrFI CCNGG 1 cut(s) 8
SduI GDGCHC 2 cut(s) 149, 234
SetI ASST 4 cut(s) 60, 165, 234, 279
Sse9I AATT 5 cut(s) 20, 33, 71, 85, 250
SsiI CCGC 2 cut(s) 143, 291
SspMI CTAG 2 cut(s) 140, 278
SstI GAGCTC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 6
TaaI ACNGT 1 cut(s) 208
TasI AATT 5 cut(s) 20, 33, 71, 85, 250
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 211
TseI GCWGC 5 cut(s) 163, 259, 268, 271, 274
TspRI CASTG 1 cut(s) 211
XapI RAATTY 2 cut(s) 20, 250
XspI CTAG 2 cut(s) 140, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.