Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021923.1

Orthogroup ID

OG0017211

Physical Location & Seq

Genomic Coordinates Forward (+)

14651 .. 15076

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021923.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ctgagccgggtcgggtcggaattttataatagaattgggttcgggttcggggcaaaggtttttactgcccaattgggtttccccaattctcattctctaaagaagaagaagaagaagaagaagcagagagacatgaccggagacgaactagcgggcccaccagcgccgaagctgcttcgtctgctctatttcgtcggcgcaggctttatttgcactgttggggttaacaaatggcgtgagctccagcgcaagtccttgaatttggagcagcagaagcagcagcagctagcccaaaataccgcaaatgcccttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

10.29

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017211)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16916 AT1G16916
malus_domestica	MD11G1264400.v1.1
prunus_persica	Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G164100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0030781
rosa_multiflora	Rmu_sc0004119.1_g000002 Rmu_sc0021923.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049540
rosa_samantha	Rh5CG235300
rosa_wichuraiana	Rw5G019490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	27
AciI	CCGC	2 cut(s)	152, 300
AcsI	RAATTY	2 cut(s)	20, 259
AgsI	TTSAA	2 cut(s)	259, 314
AluBI	AGCT	3 cut(s)	172, 241, 286
AluI	AGCT	3 cut(s)	172, 241, 286
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	2 cut(s)	123, 135
AoxI	GGCC	1 cut(s)	154
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	5 cut(s)	172, 268, 277, 280, 283
ApoI	RAATTY	2 cut(s)	20, 259
AspLEI	GCGC	3 cut(s)	166, 200, 249
AspS9I	GGNCC	2 cut(s)	154, 155
AsuC2I	CCSGG	1 cut(s)	8
AsuNHI	GCTAGC	1 cut(s)	286
BaeGI	GKGCMC	1 cut(s)	158
BanII	GRGCYC	2 cut(s)	158, 243
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	5 cut(s)	159, 280, 289, 292, 295
BcnI	CCSGG	1 cut(s)	8
BcoDI	GTCTC	2 cut(s)	123, 135
BfaI	CTAG	2 cut(s)	149, 287
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	5 cut(s)	173, 269, 278, 281, 284
BlsI	GCNGC	5 cut(s)	174, 270, 279, 282, 285
Bme1390I	CCNGG	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	154, 155
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	8
BmtI	GCTAGC	1 cut(s)	290
BpmI	CTGGAG	1 cut(s)	227
BpuMI	CCSGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	5 cut(s)	159, 280, 289, 292, 295
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	243
BsiSI	CCGG	2 cut(s)	7, 138
BsmAI	GTCTC	2 cut(s)	123, 135
BsmBI	CGTCTC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	156
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	158, 243
BspACI	CCGC	2 cut(s)	152, 300
BspANI	GGCC	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	156
BspOI	GCTAGC	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	217
BstC8I	GCNNGC	3 cut(s)	154, 202, 288
BstDEI	CTNAG	1 cut(s)	2
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	3 cut(s)	166, 200, 249
BstMAI	GTCTC	2 cut(s)	123, 135
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 181, 210, 274, 277, 283
BstSCI	CCNGG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	5 cut(s)	159, 280, 289, 292, 295
BsuRI	GGCC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	154, 202, 288
CfoI	GCGC	3 cut(s)	166, 200, 249
Cfr13I	GGNCC	2 cut(s)	154, 155
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	7 cut(s)	6, 156, 172, 204, 241, 286, 290
CviKI_1	RGCY	7 cut(s)	6, 156, 172, 204, 241, 286, 290
DdeI	CTNAG	1 cut(s)	2
Ecl136II	GAGCTC	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	158, 243
Eco53kI	GAGCTC	1 cut(s)	241
EcoICRI	GAGCTC	1 cut(s)	241
EcoT38I	GRGCYC	2 cut(s)	158, 243
Esp3I	CGTCTC	1 cut(s)	135
FaeI	CATG	1 cut(s)	136
FaiI	YATR	2 cut(s)	27, 134
FatI	CATG	1 cut(s)	132
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	5 cut(s)	173, 269, 278, 281, 284
FriOI	GRGCYC	2 cut(s)	158, 243
Fsp4HI	GCNGC	5 cut(s)	173, 269, 278, 281, 284
FspBI	CTAG	2 cut(s)	149, 287
GlaI	GCGC	3 cut(s)	165, 199, 248
GluI	GCNGC	5 cut(s)	173, 269, 278, 281, 284
GsuI	CTGGAG	1 cut(s)	227
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	2 cut(s)	7, 138
HhaI	GCGC	3 cut(s)	166, 200, 249
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	3 cut(s)	164, 198, 247
HinP1I	GCGC	3 cut(s)	164, 198, 247
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HpaI	GTTAAC	1 cut(s)	226
HpaII	CCGG	2 cut(s)	7, 138
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	19
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 181, 210, 274, 277, 283
HpyF3I	CTNAG	1 cut(s)	2
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	3 cut(s)	164, 198, 247
KspAI	GTTAAC	1 cut(s)	226
LmnI	GCTCC	2 cut(s)	246, 265
LpnPI	CCDG	5 cut(s)	20, 151, 174, 186, 257
Lsp1109I	GCAGC	5 cut(s)	159, 280, 289, 292, 295
MaeI	CTAG	2 cut(s)	149, 287
MboII	GAAGA	6 cut(s)	115, 118, 121, 124, 127, 130
MfeI	CAATTG	1 cut(s)	71
MhlI	GDGCHC	2 cut(s)	158, 243
MluCI	AATT	5 cut(s)	20, 33, 71, 85, 259
MseI	TTAA	1 cut(s)	225
MspI	CCGG	2 cut(s)	7, 138
MspR9I	CCNGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	71
MwoI	GCNNNNNNNGC	6 cut(s)	172, 181, 210, 274, 277, 283
NciI	CCSGG	1 cut(s)	8
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	174, 270, 279, 282, 285
PsiI	TTATAA	1 cut(s)	27
Psp124BI	GAGCTC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	156
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	154, 155
SacI	GAGCTC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	5 cut(s)	173, 269, 278, 281, 284
Sau96I	GGNCC	2 cut(s)	154, 155
ScrFI	CCNGG	1 cut(s)	8
SduI	GDGCHC	2 cut(s)	158, 243
SetI	ASST	4 cut(s)	60, 174, 243, 288
Sse9I	AATT	5 cut(s)	20, 33, 71, 85, 259
SsiI	CCGC	2 cut(s)	152, 300
SspMI	CTAG	2 cut(s)	149, 287
SstI	GAGCTC	1 cut(s)	243
StyD4I	CCNGG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	217
TasI	AATT	5 cut(s)	20, 33, 71, 85, 259
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	5 cut(s)	172, 268, 277, 280, 283
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	2 cut(s)	20, 259
XspI	CTAG	2 cut(s)	149, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.