Rh5CG235300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017211
Physical Location & Seq
Forward (+)
24523719 .. 24525397
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG235300.1

Sequence Viewer

Length: 324 bp
ATGACCGGAGAAGAACTAGCGGGCCCACCAGCGCCGAAGCTGCTTCGTCTGCTCTATTTCGTCGGCGCAGGCTGGGGAATTCGCAATAGCATCGCTGAGGAAGTGGACGGGTACGCTACGTTCCTAAGCTTCACAAGAAGTTTCTTCGCATGCATGGGAAAAGCATCAACCATCACAATACTGCTCGATGATGCAGAGGAAGAGTCGCATACTCACCCAGTGGTTGGCAAGGCTCAAAGATGTTTGGTATACGATATAGAAGATGTGCTTGATGAACTCCGTCAGAGTTGGACAGGAAAGGTGAAGGAGATTGGAGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.84

Weight (kDa)

4.83

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16916 AT1G16916
malus_domestica MD11G1264400.v1.1
prunus_persica Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G163600_v2.0.a1 Prupe.4G164100_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0030781
rosa_multiflora Rmu_sc0004119.1_g000002 Rmu_sc0021923.1_g000003
rosa_roxburghii Rroxscaffold_1G00049540
rosa_samantha Rh5CG235300
rosa_wichuraiana Rw5G019490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 224
AccI GTMKAC 1 cut(s) 249
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 78
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 224
AluBI AGCT 2 cut(s) 40, 129
AluI AGCT 2 cut(s) 40, 129
AoxI GGCC 1 cut(s) 22
ApaI GGGCCC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 78
AspLEI GCGC 2 cut(s) 34, 68
AspS9I GGNCC 2 cut(s) 22, 23
AsuHPI GGTGA 2 cut(s) 206, 313
BaeGI GKGCMC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 179
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BfaI CTAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 35
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BmgT120I GGNCC 2 cut(s) 22, 23
BmiI GGNNCC 1 cut(s) 24
BmrI ACTGGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 99, 173, 181
BmuI ACTGGG 1 cut(s) 212
Bpu10I CCTNAGC 2 cut(s) 96, 125
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 218
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 72
BshFI GGCC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 224
BsnI GGCC 1 cut(s) 24
Bsp120I GGGCCC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 26
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 24
BsrI ACTGG 1 cut(s) 218
BssNAI GTATAC 1 cut(s) 250
Bst1107I GTATAC 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 22, 70, 151
BstDEI CTNAG 2 cut(s) 96, 125
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 2 cut(s) 34, 68
BstMWI GCNNNNNNNGC 2 cut(s) 40, 49
BstNSI RCATGY 1 cut(s) 153
BstSLI GKGCMC 1 cut(s) 26
BstV1I GCAGC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 24
BtgZI GCGATG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 22, 70, 151
CfoI GCGC 2 cut(s) 34, 68
Cfr13I GGNCC 2 cut(s) 22, 23
Csp6I GTAC 1 cut(s) 112
CviAII CATG 2 cut(s) 150, 154
CviJI RGCY 5 cut(s) 24, 40, 72, 129, 233
CviKI_1 RGCY 5 cut(s) 24, 40, 72, 129, 233
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 96, 125
DraIII CACNNNGTG 1 cut(s) 220
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 2 cut(s) 153, 157
FaiI YATR 5 cut(s) 151, 155, 210, 250, 257
FalI AAGNNNNNCTT 2 cut(s) 252, 284
FatI CATG 2 cut(s) 149, 153
FauI CCCGC 1 cut(s) 13
FblI GTMKAC 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 17
GlaI GCGC 2 cut(s) 33, 67
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 1 cut(s) 76
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 6
HhaI GCGC 2 cut(s) 34, 68
Hin1II CATG 2 cut(s) 153, 157
Hin6I GCGC 2 cut(s) 32, 66
HinP1I GCGC 2 cut(s) 32, 66
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 203
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 206, 313
Hpy166II GTNNAC 2 cut(s) 106, 250
Hpy188I TCNGA 1 cut(s) 285
Hpy8I GTNNAC 2 cut(s) 106, 250
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 2 cut(s) 153, 194
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 49
HpyF3I CTNAG 2 cut(s) 96, 125
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 2 cut(s) 153, 157
HspAI GCGC 2 cut(s) 32, 66
LpnPI CCDG 6 cut(s) 19, 42, 54, 58, 231, 279
Lsp1109I GCAGC 1 cut(s) 27
LweI GCATC 3 cut(s) 99, 173, 181
MaeI CTAG 1 cut(s) 17
MaeII ACGT 1 cut(s) 119
MboII GAAGA 4 cut(s) 23, 136, 212, 272
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 1 cut(s) 78
MlyI GAGTC 1 cut(s) 212
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 2 cut(s) 91, 190
Mph1103I ATGCAT 1 cut(s) 155
MspI CCGG 1 cut(s) 6
MwoI GCNNNNNNNGC 2 cut(s) 40, 49
NlaIII CATG 2 cut(s) 153, 157
NlaIV GGNNCC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 155
NspI RCATGY 1 cut(s) 153
PaeI GCATGC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 211
PpsI GAGTC 1 cut(s) 211
PspFI CCCAGC 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 24
PspOMI GGGCCC 1 cut(s) 22
PspPI GGNCC 2 cut(s) 22, 23
PsrI GAACNNNNNNTAC 2 cut(s) 104, 136
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SatI GCNGC 1 cut(s) 41
Sau96I GGNCC 2 cut(s) 22, 23
SchI GAGTC 1 cut(s) 212
SduI GDGCHC 1 cut(s) 26
SetI ASST 4 cut(s) 42, 122, 131, 303
SfaNI GCATC 3 cut(s) 99, 173, 181
SphI GCATGC 1 cut(s) 153
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 17
TaiI ACGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 78
TscAI CASTG 1 cut(s) 225
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 288
TspGWI ACGGA 1 cut(s) 269
TspRI CASTG 1 cut(s) 225
Van91I CCANNNNNTGG 1 cut(s) 224
XapI RAATTY 1 cut(s) 78
XceI RCATGY 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 249
XspI CTAG 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.