MD11G1289500.v1.1

CSC1-like protein At4g02900

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010682
Physical Location & Seq
Forward (+)
40915941 .. 40920741
4801 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1289500.v1.1.491

Sequence Viewer

Length: 2274 bp
ATGGCGAATTTTCAAGATATTATGATGTCAGCAGCCATCAACATTCTGTCTGCATTCGGATTTCTGGTGGCGTTTGGTCTGCTGCGGCTGCAGCCGTTCAACGACAGAGTCTACTTTCCGAAATGGTACCTCAAGGGGATGAGGGGAAGCCCCACGAGCTCCGGCGCCACCGTCAGGAAATTCGTCAATCTGGACGCCAAAACCTACTTCAAGTTCCTCAATTGGATGCCTGCCGCGCTGCGGATGCCCGAACCGGAGCTCATTGATCACGCCGGCCTTGATTCCGCCGCTTACATTCGGATTTATGTGCTCGGCTTGAAGATATTCGTCCCCATAACCGCGCTTGCGCTTGGTGTTTTGGTGCCTGTCAATTATATGAGCAATACGCTGGAAAGGAGCCGTGAAGTAGTATTCAGCGACATTGATAAACTCTCAATATCCAATATTCCTTCTGGATCTCCCAAGTTTTTCGCACATCTCGTGATGTCTTATGTATTTACCTTTTGGACATGCTTTGTTTTATACCATGAGTACAAGACAGTGGCTACTAAACGGCTTCAATTTTTAGCATCTGAAAAGCGTCGTCCTGATCAGTTCACGGTTCTTGTGAGGAATGTACCCCCAGATCCTGATGAATCAGTCAGTGAGCATATCGAACATTTCTTCTGTGTAAACCATCCCGGTCACTATCTTACGCATCAAGTTGTATACAATGCAAATAAACTTGCACAGGTGGTCGACAAGAAGAAGAGTACGAAAAATTGGCTTGTGTACTACCAAAACAAGTTTGAGAGAAATCCCAAGACAAAGCCTACTACAAAGACAGGTTTCTTGGGCCTATGGGGAGATAGAGTCGACGCGATTGATTACTACAATGATACGATCAAGAAATTGGTCGAAGAAGAAAAGCAAGAACGAGAAAAGGTTATAAGTGATCCTGATGCCATAATGCCTGCAGCATTTGTTTCATTCAAAACGCGATGGGGAGCAGCTGTGTGTGCTCAAACTCAGCAGTCACGTAATCCTACCATCTGGTTGACGGAGTGGGCTCCTGAGCCACGCGACATCTATTGGAATAACCTTGCAATTCCATACGTTGAACTCAACGTGCGAAAATTGCTCATGGGTGTTGCCTTTTTCTTCCTTACTTTCTTCTTCATGATTCCAATTGCGTTCGTCCAATCTTTAGCTAACATCGAGGGGATTCAGAAGGCCCTTCCTTTCTTGAAGCCACTACTTCAGATAAGTTCTGTCAAGTCTGTTGTCCAAGGGTTTCTTCCAGGAATTGCATTGAAGATATTTCTCGCTATACTTCCCATGATTCTTATGCTTATGTCAAAGATTGAGGGCTTAACATCACTCTCACATCTGGATAGGAGATCTGCAGCGAAGTATCATTTGTTCATACTTATCAATGTGTTCCTAGGAAGCATTGTTACTGGAACGGCACTTCAGCAGCTTGAGAAACTTATGAACGAGCCCTCAACCGAGTTCACAAAAACTGTTGGGAGGTCCATCCCAATGAAAGGTACATTCTTCATCACTTATGTCATGGTTGATGGTTGGAGTGGAATCGCTGCAGAAATCCTCAGATTGGTGCCGTTAATTTTGTTTCACCTCAAGAACACATTTCTGGTTAAGACAGAACAAGATCGGGAGCAGGCAACTGATCCCGGTTCCTTGAATTTCGCTACAAACGAACCTAGGACACAATTATATTTTCTGCTGGGTCTTGTTTATTCTGTTGTCACACCTATACTACTTCCTTTCATTCTCATATTCTTCGCTTTCGCCTACGTGGTTTATCGTCATCAGATTATTAATGTCTATGACCAGAAATATGAGAGTGGCGCGGCCTTCTGGCCACAGGTGCATCTTCGTGTAATTATCGGTCTAATCATAGCACAAGTTCTACTAATGGGGTTGTTTAGCACATTAGGCGTTGCGAAATCAACATTCATTCTCATCCCGCAACCTATTTTGACACTCTGGTTCCATAGAGTCTGCAAGGGGCGATTCGAATCAGCATTCCTAAAATTCCCACTACAGGAGGCAATGGTGAAGGATACGGTCGAGCGTGCAACGGAACCAAACCTGAATCTGTTGAACTATCTGAAGGACGCTTACGTGCATCCCGTTTTCAAGGGAGGGCAGATGCAGAATCACGAAGTAGACGTTGACGAGGAGGAGAGCAGTCCTCTTGTTGTTACAAAGAGAACGTCTCAAATGGGAAGTAAACACGAGTCCGATGCCGGTCCTGAAATTCGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

758

Amino Acids

86.24

Weight (kDa)

9.13

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 7 - 177 8.5e-39 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 198 - 360 8.3e-48 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 371 - 643 1.4e-86 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010682)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02900 AT4G02900 AT4G02900 AT4G02900
fragaria_vesca FvH4_2g23940 FvH4_2g23940
malus_domestica MD11G1289500.v1.1
prunus_persica Prupe.8G244700_v2.0.a1 Prupe.8G244700_v2.0.a1
pyrus_communis pycom11g25690
rosa_chinensis RchiOBHm_Chr6g0291571
rosa_laevigata RLG00000012106
rosa_roxburghii Rroxscaffold_7G00175960
rosa_rugosa Rorug06G0220300 Rorug06G0220400 Rorug06G0220400
rosa_samantha Rh6AG332700 Rh6CG345900 Rh6DG333100
rosa_wichuraiana Rw6G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 929
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 4 cut(s) 126, 164, 361, 1597
AccI GTMKAC 5 cut(s) 111, 708, 738, 855, 2172
AccII CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
AciI CCGC 8 cut(s) 85, 234, 241, 285, 288, 339, 1853, 1970
AclWI GGATC 4 cut(s) 463, 620, 929, 1664
AcoI YGGCCR 1 cut(s) 1862
AcsI RAATTY 5 cut(s) 7, 179, 1684, 2036, 2262
AcuI CTGAAG 3 cut(s) 1223, 1436, 2135
AcyI GRCGYC 2 cut(s) 165, 195
AfaI GTAC 6 cut(s) 128, 533, 618, 754, 773, 1531
AfiI CCNNNNNNNGG 5 cut(s) 174, 240, 1526, 1594, 2047
AjnI CCWGG 1 cut(s) 1279
AjuI GAANNNNNNNTTGG 4 cut(s) 191, 223, 1260, 1292
AluBI AGCT 5 cut(s) 159, 259, 992, 1190, 1459
AluI AGCT 5 cut(s) 159, 259, 992, 1190, 1459
Alw21I GWGCWC 4 cut(s) 161, 261, 312, 1003
Alw26I GTCTC 1 cut(s) 2226
AlwI GGATC 4 cut(s) 463, 620, 929, 1664
AlwNI CAGNNNCTG 1 cut(s) 629
AoxI GGCC 5 cut(s) 274, 835, 1212, 1854, 1862
ApoI RAATTY 5 cut(s) 7, 179, 1684, 2036, 2262
ArsI GACNNNNNNTTYG 2 cut(s) 2204, 2236
AseI ATTAAT 1 cut(s) 1821
Asp700I GAANNNNTTC 1 cut(s) 323
Asp718I GGTACC 1 cut(s) 126
AspA2I CCTAGG 2 cut(s) 1423, 1703
AspLEI GCGC 5 cut(s) 167, 238, 343, 349, 1853
AspS9I GGNCC 4 cut(s) 835, 1213, 1512, 2255
AsuC2I CCSGG 2 cut(s) 681, 1674
AsuHPI GGTGA 2 cut(s) 1607, 2071
AsuII TTCGAA 1 cut(s) 2019
AvaII GGWCC 2 cut(s) 1512, 2255
AvrII CCTAGG 2 cut(s) 1423, 1703
BalI TGGCCA 1 cut(s) 1864
BanI GGYRCC 4 cut(s) 126, 164, 361, 1597
BanII GRGCYC 4 cut(s) 161, 261, 1051, 1482
BarI GAAGNNNNNNTAC 4 cut(s) 1420, 1452, 2108, 2140
BauI CACGAG 3 cut(s) 154, 479, 2240
Bbv12I GWGCWC 4 cut(s) 161, 261, 312, 1003
BccI CCATC 6 cut(s) 44, 684, 975, 1037, 1523, 1553
BceAI ACGGC 5 cut(s) 79, 384, 569, 1461, 1585
BcgI CGANNNNNNTGC 2 cut(s) 2231, 2265
BciT130I CCWGG 1 cut(s) 1281
BciVI GTATCC 1 cut(s) 2059
BclI TGATCA 2 cut(s) 265, 589
BcnI CCSGG 2 cut(s) 681, 1674
BcoDI GTCTC 1 cut(s) 2226
BfaI CTAG 2 cut(s) 1424, 1704
BfmI CTRYAG 5 cut(s) 89, 954, 1383, 1578, 2045
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 1 cut(s) 2059
BglII AGATCT 1 cut(s) 1379
BlnI CCTAGG 2 cut(s) 1423, 1703
Bme1390I CCNGG 3 cut(s) 681, 1281, 1674
Bme18I GGWCC 2 cut(s) 1512, 2255
BmgT120I GGNCC 4 cut(s) 835, 1213, 1512, 2255
BmiI GGNNCC 9 cut(s) 128, 166, 363, 398, 1050, 1599, 1678, 1994, 2088
BmrFI CCNGG 3 cut(s) 681, 1281, 1674
BmsI GCATC 9 cut(s) 216, 234, 578, 706, 931, 1882, 2140, 2145, 2239
BplI GAGNNNNNCTC 4 cut(s) 2182, 2214, 2206, 2238
Bpu10I CCTNAGC 1 cut(s) 1053
Bpu14I TTCGAA 1 cut(s) 2019
BpuEI CTTGAG 3 cut(s) 116, 1481, 1604
BpuMI CCSGG 2 cut(s) 681, 1674
BsaAI YACGTR 3 cut(s) 1019, 1798, 2128
BsaBI GATNNNNATC 1 cut(s) 2020
BsaHI GRCGYC 2 cut(s) 165, 195
BsaJI CCNNGG 3 cut(s) 1267, 1423, 1703
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 4 cut(s) 837, 867, 978, 1008
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 240, 1526, 1594, 2047
Bse118I RCCGGY 2 cut(s) 272, 2252
Bse1I ACTGG 1 cut(s) 1444
Bse3DI GCAATG 1 cut(s) 2061
Bse8I GATNNNNATC 1 cut(s) 2020
BseBI CCWGG 1 cut(s) 1281
BseDI CCNNGG 3 cut(s) 1267, 1423, 1703
BseGI GGATG 7 cut(s) 144, 231, 249, 676, 1515, 1965, 2131
BseJI GATNNNNATC 1 cut(s) 2020
BseLI CCNNNNNNNGG 5 cut(s) 174, 240, 1526, 1594, 2047
BseMI GCAATG 1 cut(s) 2061
BseMII CTCAG 3 cut(s) 1022, 1044, 1603
BseNI ACTGG 1 cut(s) 1444
BseRI GAGGAG 2 cut(s) 2198, 2201
BseYI CCCAGC 1 cut(s) 1726
Bsh1236I CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
Bsh1285I CGRYCG 1 cut(s) 2073
BshFI GGCC 5 cut(s) 276, 837, 1214, 1856, 1864
BshNI GGYRCC 4 cut(s) 126, 164, 361, 1597
BsiEI CGRYCG 1 cut(s) 2073
BsiHKAI GWGCWC 4 cut(s) 161, 261, 312, 1003
BsiSI CCGG 6 cut(s) 162, 254, 273, 681, 1674, 2253
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 5 cut(s) 174, 240, 1526, 1594, 2047
BsmAI GTCTC 1 cut(s) 2226
BsmBI CGTCTC 1 cut(s) 2226
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 2 cut(s) 53, 2027
BsnI GGCC 5 cut(s) 276, 837, 1214, 1856, 1864
Bsp119I TTCGAA 1 cut(s) 2019
Bsp1286I GDGCHC 6 cut(s) 161, 261, 312, 1003, 1051, 1482
Bsp143I GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
BspACI CCGC 8 cut(s) 85, 234, 241, 285, 288, 339, 1853, 1970
BspANI GGCC 5 cut(s) 276, 837, 1214, 1856, 1864
BspCNI CTCAG 3 cut(s) 1021, 1045, 1602
BspFNI CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
BspHI TCATGA 1 cut(s) 1158
BspLI GGNNCC 9 cut(s) 128, 166, 363, 398, 1050, 1599, 1678, 1994, 2088
BspMAI CTGCAG 4 cut(s) 93, 958, 1387, 1582
BspPI GGATC 4 cut(s) 463, 620, 929, 1664
BspT104I TTCGAA 1 cut(s) 2019
BspT107I GGYRCC 4 cut(s) 126, 164, 361, 1597
BsrDI GCAATG 1 cut(s) 2061
BsrFI RCCGGY 2 cut(s) 272, 2252
BsrI ACTGG 1 cut(s) 1444
BssAI RCCGGY 2 cut(s) 272, 2252
BssECI CCNNGG 3 cut(s) 1267, 1423, 1703
BssMI GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
BssNAI GTATAC 1 cut(s) 709
BssNI GRCGYC 2 cut(s) 165, 195
BssSI CACGAG 3 cut(s) 154, 479, 2240
BssT1I CCWWGG 3 cut(s) 1267, 1423, 1703
Bst1107I GTATAC 1 cut(s) 709
Bst2BI CACGAG 3 cut(s) 154, 479, 2240
Bst2UI CCWGG 1 cut(s) 1281
Bst4CI ACNGT 5 cut(s) 172, 541, 601, 1504, 2071
Bst6I CTCTTC 1 cut(s) 743
BstACI GRCGYC 2 cut(s) 165, 195
BstBAI YACGTR 3 cut(s) 1019, 1798, 2128
BstBI TTCGAA 1 cut(s) 2019
BstC8I GCNNGC 6 cut(s) 231, 274, 345, 954, 1662, 2079
BstDEI CTNAG 3 cut(s) 1008, 1053, 1589
BstF5I GGATG 7 cut(s) 144, 231, 249, 676, 1515, 1965, 2131
BstFNI CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 5 cut(s) 167, 238, 343, 349, 1853
BstKTI GATC 9 cut(s) 268, 458, 592, 628, 885, 937, 1382, 1654, 1672
BstMAI GTCTC 1 cut(s) 2226
BstMBI GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
BstMCI CGRYCG 1 cut(s) 2073
BstMWI GCNNNNNNNGC 9 cut(s) 88, 91, 156, 235, 244, 998, 1117, 1870, 1938
BstNI CCWGG 1 cut(s) 1281
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 679, 1279, 1672
BstSFI CTRYAG 5 cut(s) 89, 954, 1383, 1578, 2045
BstUI CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
BstX2I RGATCY 3 cut(s) 455, 625, 1379
BstYI RGATCY 3 cut(s) 455, 625, 1379
BstZ17I GTATAC 1 cut(s) 709
BsuI GTATCC 1 cut(s) 2059
BsuRI GGCC 5 cut(s) 276, 837, 1214, 1856, 1864
BtgZI GCGATG 1 cut(s) 994
BtsCI GGATG 7 cut(s) 144, 231, 249, 676, 1515, 1965, 2131
BtsIMutI CAGTG 2 cut(s) 546, 649
Cac8I GCNNGC 6 cut(s) 231, 274, 345, 954, 1662, 2079
CaiI CAGNNNCTG 1 cut(s) 629
CciI TCATGA 1 cut(s) 1158
CfoI GCGC 5 cut(s) 167, 238, 343, 349, 1853
Cfr10I RCCGGY 2 cut(s) 272, 2252
Cfr13I GGNCC 4 cut(s) 835, 1213, 1512, 2255
CseI GACGC 4 cut(s) 203, 569, 866, 2129
Csp6I GTAC 6 cut(s) 127, 532, 617, 753, 772, 1530
CviAII CATG 6 cut(s) 510, 527, 1123, 1159, 1318, 1552
CviQI GTAC 6 cut(s) 127, 532, 617, 753, 772, 1530
DdeI CTNAG 3 cut(s) 1008, 1053, 1589
DinI GGCGCC 1 cut(s) 166
DpnI GATC 9 cut(s) 267, 457, 591, 627, 884, 936, 1381, 1653, 1671
DpnII GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
EaeI YGGCCR 1 cut(s) 1862
Eam1104I CTCTTC 1 cut(s) 743
EarI CTCTTC 1 cut(s) 743
EciI GGCGGA 1 cut(s) 274
Ecl136II GAGCTC 2 cut(s) 159, 259
Eco130I CCWWGG 3 cut(s) 1267, 1423, 1703
Eco24I GRGCYC 4 cut(s) 161, 261, 1051, 1482
Eco47I GGWCC 2 cut(s) 1512, 2255
Eco53kI GAGCTC 2 cut(s) 159, 259
Eco57I CTGAAG 3 cut(s) 1223, 1436, 2135
EcoICRI GAGCTC 2 cut(s) 159, 259
EcoO109I RGGNCCY 1 cut(s) 1213
EcoRII CCWGG 1 cut(s) 1279
EcoT14I CCWWGG 3 cut(s) 1267, 1423, 1703
EcoT38I GRGCYC 4 cut(s) 161, 261, 1051, 1482
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
ErhI CCWWGG 3 cut(s) 1267, 1423, 1703
Esp3I CGTCTC 1 cut(s) 2226
FaeI CATG 6 cut(s) 513, 530, 1126, 1162, 1321, 1555
FalI AAGNNNNNCTT 2 cut(s) 1260, 1292
FaqI GGGAC 1 cut(s) 314
FatI CATG 6 cut(s) 509, 526, 1122, 1158, 1317, 1551
FauI CCCGC 1 cut(s) 1977
FbaI TGATCA 2 cut(s) 265, 589
FblI GTMKAC 5 cut(s) 111, 708, 738, 855, 2172
FokI GGATG 7 cut(s) 151, 238, 256, 663, 1502, 1952, 2118
FriOI GRGCYC 4 cut(s) 161, 261, 1051, 1482
FspBI CTAG 2 cut(s) 1424, 1704
GlaI GCGC 5 cut(s) 166, 237, 342, 348, 1852
GsaI CCCAGC 1 cut(s) 1730
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 5 cut(s) 276, 837, 1214, 1856, 1864
HapII CCGG 6 cut(s) 162, 254, 273, 681, 1674, 2253
HgaI GACGC 4 cut(s) 203, 569, 866, 2129
HhaI GCGC 5 cut(s) 167, 238, 343, 349, 1853
Hin1I GRCGYC 2 cut(s) 165, 195
Hin1II CATG 6 cut(s) 513, 530, 1126, 1162, 1321, 1555
Hin6I GCGC 5 cut(s) 165, 236, 341, 347, 1851
HinP1I GCGC 5 cut(s) 165, 236, 341, 347, 1851
HincII GTYRAC 4 cut(s) 739, 856, 1038, 2179
HindII GTYRAC 4 cut(s) 739, 856, 1038, 2179
HpaII CCGG 6 cut(s) 162, 254, 273, 681, 1674, 2253
HphI GGTGA 2 cut(s) 1607, 2071
Hpy99I CGWCG 2 cut(s) 585, 860
HpyAV CCTTC 6 cut(s) 459, 1204, 1226, 1867, 2056, 2110
HpyCH4III ACNGT 5 cut(s) 172, 541, 601, 1504, 2071
HpyCH4IV ACGT 7 cut(s) 1018, 1095, 1107, 1797, 2127, 2175, 2219
HpyF10VI GCNNNNNNNGC 9 cut(s) 88, 91, 156, 235, 244, 998, 1117, 1870, 1938
HpyF3I CTNAG 3 cut(s) 1008, 1053, 1589
HpySE526I ACGT 7 cut(s) 1018, 1095, 1107, 1797, 2127, 2175, 2219
Hsp92I GRCGYC 2 cut(s) 165, 195
Hsp92II CATG 6 cut(s) 513, 530, 1126, 1162, 1321, 1555
HspAI GCGC 5 cut(s) 165, 236, 341, 347, 1851
KasI GGCGCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 2 cut(s) 265, 589
Kzo9I GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
LmnI GCTCC 6 cut(s) 164, 256, 396, 986, 1054, 1657
LweI GCATC 9 cut(s) 216, 234, 578, 706, 931, 1882, 2140, 2145, 2239
MaeI CTAG 2 cut(s) 1424, 1704
MaeII ACGT 7 cut(s) 1018, 1095, 1107, 1797, 2127, 2175, 2219
MaeIII GTNAC 5 cut(s) 683, 1014, 1435, 1747, 2206
MalI GATC 9 cut(s) 267, 457, 591, 627, 884, 936, 1381, 1653, 1671
MboI GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
MfeI CAATTG 2 cut(s) 220, 1167
MflI RGATCY 3 cut(s) 455, 625, 1379
MhlI GDGCHC 6 cut(s) 161, 261, 312, 1003, 1051, 1482
MlsI TGGCCA 1 cut(s) 1864
MluNI TGGCCA 1 cut(s) 1864
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 4 cut(s) 117, 861, 2010, 2252
MmeI TCCRAC 1 cut(s) 1544
Mox20I TGGCCA 1 cut(s) 1864
MroNI GCCGGC 1 cut(s) 272
MroXI GAANNNNTTC 1 cut(s) 323
MscI TGGCCA 1 cut(s) 1864
MseI TTAA 4 cut(s) 1352, 1604, 1638, 1821
MslI CAYNNNNRTG 2 cut(s) 1520, 1878
Msp20I TGGCCA 1 cut(s) 1864
MspA1I CMGCKG 1 cut(s) 992
MspI CCGG 6 cut(s) 162, 254, 273, 681, 1674, 2253
MspR9I CCNGG 3 cut(s) 681, 1281, 1674
MunI CAATTG 2 cut(s) 220, 1167
Mva1269I GAATGC 2 cut(s) 53, 2027
MvaI CCWGG 1 cut(s) 1281
MvnI CGCG 6 cut(s) 236, 341, 860, 979, 1062, 1853
MwoI GCNNNNNNNGC 9 cut(s) 88, 91, 156, 235, 244, 998, 1117, 1870, 1938
NaeI GCCGGC 1 cut(s) 274
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 2 cut(s) 681, 1674
NdeII GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 6 cut(s) 513, 530, 1126, 1162, 1321, 1555
NlaIV GGNNCC 9 cut(s) 128, 166, 363, 398, 1050, 1599, 1678, 1994, 2088
NmeAIII GCCGAG 1 cut(s) 291
NmuCI GTSAC 3 cut(s) 683, 1014, 1747
NspI RCATGY 1 cut(s) 513
NspV TTCGAA 1 cut(s) 2019
PagI TCATGA 1 cut(s) 1158
PcsI WCGNNNNNNNCGW 4 cut(s) 477, 1695, 2133, 2172
PctI GAATGC 2 cut(s) 53, 2027
PdiI GCCGGC 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 323
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 1 cut(s) 1279
PleI GAGTC 4 cut(s) 116, 860, 2009, 2251
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 4 cut(s) 116, 860, 2009, 2251
Ppu21I YACGTR 3 cut(s) 1019, 1798, 2128
PshBI ATTAAT 1 cut(s) 1821
PsiI TTATAA 1 cut(s) 929
Psp124BI GAGCTC 2 cut(s) 161, 261
Psp6I CCWGG 1 cut(s) 1279
PspFI CCCAGC 1 cut(s) 1726
PspGI CCWGG 1 cut(s) 1279
PspN4I GGNNCC 9 cut(s) 128, 166, 363, 398, 1050, 1599, 1678, 1994, 2088
PspPI GGNCC 4 cut(s) 835, 1213, 1512, 2255
PsrI GAACNNNNNNTAC 2 cut(s) 1385, 1417
PstI CTGCAG 4 cut(s) 93, 958, 1387, 1582
PstNI CAGNNNCTG 1 cut(s) 629
PsuI RGATCY 3 cut(s) 455, 625, 1379
PsyI GACNNNGTC 1 cut(s) 107
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 6 cut(s) 128, 533, 618, 754, 773, 1531
RsaNI GTAC 6 cut(s) 127, 532, 617, 753, 772, 1530
RseI CAYNNNNRTG 2 cut(s) 1520, 1878
SacI GAGCTC 2 cut(s) 161, 261
SalI GTCGAC 2 cut(s) 737, 854
SaqAI TTAA 4 cut(s) 1352, 1604, 1638, 1821
Sau3AI GATC 9 cut(s) 265, 455, 589, 625, 882, 934, 1379, 1651, 1669
Sau96I GGNCC 4 cut(s) 835, 1213, 1512, 2255
SchI GAGTC 4 cut(s) 117, 861, 2010, 2252
ScrFI CCNGG 3 cut(s) 681, 1281, 1674
SduI GDGCHC 6 cut(s) 161, 261, 312, 1003, 1051, 1482
SfaNI GCATC 9 cut(s) 216, 234, 578, 706, 931, 1882, 2140, 2145, 2239
SfcI CTRYAG 5 cut(s) 89, 954, 1383, 1578, 2045
SfoI GGCGCC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 2019
SinI GGWCC 2 cut(s) 1512, 2255
SmiMI CAYNNNNRTG 2 cut(s) 1520, 1878
SmlI CTYRAG 3 cut(s) 131, 1460, 1619
SmoI CTYRAG 3 cut(s) 131, 1460, 1619
SsiI CCGC 8 cut(s) 85, 234, 241, 285, 288, 339, 1853, 1970
SspDI GGCGCC 1 cut(s) 164
SspI AATATT 1 cut(s) 445
SspMI CTAG 2 cut(s) 1424, 1704
SstI GAGCTC 2 cut(s) 161, 261
StyD4I CCNGG 3 cut(s) 679, 1279, 1672
StyI CCWWGG 3 cut(s) 1267, 1423, 1703
TaaI ACNGT 5 cut(s) 172, 541, 601, 1504, 2071
TaiI ACGT 7 cut(s) 1021, 1098, 1110, 1800, 2130, 2178, 2222
TaqI TCGA 7 cut(s) 654, 738, 855, 897, 1197, 2019, 2073
TaqII GACCGA 1 cut(s) 1880
TatI WGTACW 2 cut(s) 531, 771
TauI GCSGC 4 cut(s) 88, 236, 290, 1856
Tru1I TTAA 4 cut(s) 1352, 1604, 1638, 1821
Tru9I TTAA 4 cut(s) 1352, 1604, 1638, 1821
TscAI CASTG 2 cut(s) 546, 649
TseFI GTSAC 3 cut(s) 683, 1014, 1747
Tsp45I GTSAC 3 cut(s) 683, 1014, 1747
TspDTI ATGAA 9 cut(s) 648, 957, 1147, 1393, 1487, 1528, 1538, 1759, 1948
TspGWI ACGGA 2 cut(s) 1055, 2099
TspRI CASTG 2 cut(s) 546, 649
Tth111I GACNNNGTC 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 1512, 2255
VspI ATTAAT 1 cut(s) 1821
XapI RAATTY 5 cut(s) 7, 179, 1684, 2036, 2262
XceI RCATGY 1 cut(s) 513
XmaJI CCTAGG 2 cut(s) 1423, 1703
XmiI GTMKAC 5 cut(s) 111, 708, 738, 855, 2172
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 2 cut(s) 1424, 1704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.