RchiOBHm_Chr6g0291571

CSC1-like protein At4g02900

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010682
Physical Location & Seq
Forward (+)
54657546 .. 54662059
4514 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26162

Sequence Viewer

Length: 2340 bp
ATGGCGGATCTTCTAGAAATCCTGACGTCAGCAGGTATTAACCTGGCGACGGCATTGGGGTTCCTTGTGGCGTTTGCTTTGCTGCGGCTTCAGCCCATCAACGACAGAGTCTACTTCCCGAAATGGTACCGAAAAGGGATCAGAGGGAGCCCGACGAGCTCCGGGACTTTTGTCAAGAGGTTTGTCAACTTGGATGCCATGACCTACATCAAGTTTCTGAATTGGATGCCTGCAGCACTGAGGATGCCGGAGCCTGAGCTCATTGATCACGCCGGGCTAGACTCTGCTGCTTACATTCGGATTTATGTACTTGGCTTGAAGATATTCTTCCCCATTACTGTTCTTTCACTTGCGGTTTTGATTCCTCTCAATTACACGAACGACACGCTGGAAAAATCCAAGGAAGTAGAATACAGCGACATTGATAAAATCTCAATATCCAATGTCCCTACTGCATCTCTTAAGAAATGTGATGATCATACTTTCCAAATATGGAAATTCTGTTTATCTTCTAGGTTCATTGGACATCTCATATTGTCTTATGTCTTCTCAATTTGGACGTGCTTTGTTTTATACCACGAGTACAAGACAGTGGCTACTAAAAGGCTTCAATTTTTAGCATCTCAAAAACGCCGTCCAGATCAATTTTCGGTTCTTGTGAGGAATGTACCGCCAGATCCTGATGAATCAGTCAGTGAGCATATCGAACACTTCTTTTGCGTAAACCATCCCAACGACTATCTTACACATCAAGTTGTATATAATACAAATAAACTTGCAAAGTTGGTTGCACAGAAGAAGAGTTTGAAAAATAGGTTTGTGTACTACCAAAATAAGTATGAGAGAAATCCAGAGAAATCAAGGCCTACTACAAAGACAGGTTTCTTGGGCCTGTTGGGAGACAAAGTGGACGCAATTGATTACTACACAACTGAGATTGAAAAGTTGAGCGAAGAAAAAAAAGAAAGAGAAAGAGTTGCGAGTGATCCTGAAGCCATAATGCCAGCAGCATTTGTTTCATTCAAATCGCGATGGGGAGCAGCCGTATGTGCTCAAACTCAGCAATCAAGTAATGCTACCATCTGGTTGACAGAGTGGGCTCCTGAGCCACGTGACATCTATTGGAGAAATCTTTCAATTCCATACGTTGAACTCAATGTGCGGAAACTGCTCATGGCTGTTGCTTTCTTTGTTCTCATTTCCTTTTTTATGATTCCAATAGCATTCGTCCAAACTCTAGCCAACATTGACAATCTTAAGAAGGCCCTTCCTTTCTTGAAGCCAATAATAGAGAAGTGTCAAGTTAAGTCTGTCATCCAAGGATTTCTTCCAGGAATTGCATTGAAGATATTCCTTGCTATACTTCCTATGATTCTAATGCTCATGTCAAAGATAGAGGGTTATACATCACTCTCATCTCTGGATAGGAGATCTGCTGCGAAGTATTATTTATTCATACTTATCAATATGTTTCTGGGAAATATTGTTGCAGGAACAGCATTTGAGCAGCTTGAGGAATTTACTAGCCAGGCCTCATCAGAATATTTAAAAACTATTGGGAGGACCATGCCAATGAAAGGCACATTTTTCATCACTTATATAATGGTTGATGGTTGGAGTGGAATTGCTGCAGAAATCATCAGATTGGTTCCGCTAGCTCTATACCACTTCAAAAACACATTTTTGGTTAAGACAGAACAAGATAGGGAGGAAGCAATGAATCCTGGTTCCTTGGCATTTGCTACAAATGAACCTAGAATACAGTTCTATATGTTGCTGGGCCTTGTATATTCTGTTGTCACTCCTTTACTTCTTCCATTTATTCTTATCTTCTTTGCTTTTGCCTACGTGGTTTTCCGTCACCAGATTATTAATGTCTATGATCAGAAATATGAGAGTGGTGCAGCCTTTTGGCCGCGTGTGCATATGCGTGTAATTATTGGCCTAATCGTATCCCAAGTCCTTGTAATTGGACTATTTAGCACATTAGATGTGCACTATTCAACATATATTCTCATTCCACAACCTATTTTGACATTCTGGTTCTATAGAGTCTGCAAGGGTCGTTTCGAACCAGCATTCGTGACATTTCCTTTACAGGATGCAATGGTAAAGGATACAGTTGAACGAGCTACTGAACCAACCTTGAATTTGTTGGCCTATCTTAAGGATGCTTATGTACATCCTGACTTCAAGGGAGGGGAGATGTACAAACCCGAAGCCATTGACGAAGAAGAGAGAAATCCTCTTGTTCCTACAAAGAGAACATCTCAAATGGCATCTCAAACTGGTAGTAAACACGAGTCTGAAGGCTCTGAAGGACCTTTTTTGAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHM7_cyt RSN1_7TM RSN1_TM

Protein Analysis

779

Amino Acids

89.11

Weight (kDa)

8.82

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RSN1_TM PF13967 7 - 194 1.4e-36 Late exocytosis, associated with Golgi transport
PHM7_cyt PF14703 215 - 377 2.3e-47 Cytosolic domain of 10TM putative phosphate transporter
RSN1_7TM PF02714 388 - 660 2.4e-84 Calcium-dependent channel, 7TM region, putative phosphate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010682)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02900 AT4G02900 AT4G02900 AT4G02900
fragaria_vesca FvH4_2g23940 FvH4_2g23940
malus_domestica MD11G1289500.v1.1
prunus_persica Prupe.8G244700_v2.0.a1 Prupe.8G244700_v2.0.a1
pyrus_communis pycom11g25690
rosa_chinensis RchiOBHm_Chr6g0291571
rosa_laevigata RLG00000012106
rosa_roxburghii Rroxscaffold_7G00175960
rosa_rugosa Rorug06G0220300 Rorug06G0220400 Rorug06G0220400
rosa_samantha Rh6AG332700 Rh6CG345900 Rh6DG333100
rosa_wichuraiana Rw6G028890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 29
Acc36I ACCTGC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 111
AccII CGCG 2 cut(s) 1030, 1918
AciI CCGC 7 cut(s) 5, 85, 353, 671, 1162, 1652, 1916
AclWI GGATC 4 cut(s) 15, 146, 671, 980
AcoI YGGCCR 1 cut(s) 1913
AcsI RAATTY 3 cut(s) 497, 1517, 2149
AcuI CTGAAG 4 cut(s) 74, 1011, 2328, 2337
AcvI CACGTG 1 cut(s) 1112
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 7 cut(s) 128, 309, 584, 669, 824, 2181, 2210
AfiI CCNNNNNNNGG 2 cut(s) 49, 1577
AflII CTTAAG 3 cut(s) 461, 1256, 2165
AjiI CACGTC 1 cut(s) 561
AjnI CCWGG 4 cut(s) 42, 1330, 1527, 1723
AjuI GAANNNNNNNTTGG 2 cut(s) 1311, 1343
AluBI AGCT 5 cut(s) 159, 259, 1510, 1658, 2132
AluI AGCT 5 cut(s) 159, 259, 1510, 1658, 2132
Alw21I GWGCWC 4 cut(s) 161, 261, 1054, 1998
Alw26I GTCTC 1 cut(s) 894
Alw44I GTGCAC 1 cut(s) 1994
AlwI GGATC 4 cut(s) 15, 146, 671, 980
AlwNI CAGNNNCTG 1 cut(s) 680
AoxI GGCC 8 cut(s) 863, 889, 1263, 1530, 1780, 1913, 1942, 2157
ApaLI GTGCAC 1 cut(s) 1994
ApeKI GCWGC 9 cut(s) 82, 233, 287, 1007, 1040, 1436, 1507, 1628, 1904
ApoI RAATTY 3 cut(s) 497, 1517, 2149
ArsI GACNNNNNNTTYG 2 cut(s) 619, 651
AseI ATTAAT 1 cut(s) 1872
Asp700I GAANNNNTTC 3 cut(s) 323, 1132, 1349
Asp718I GGTACC 1 cut(s) 126
AspS9I GGNCC 5 cut(s) 889, 1264, 1563, 1780, 2321
AsuC2I CCSGG 2 cut(s) 163, 274
AsuHPI GGTGA 1 cut(s) 1853
AsuII TTCGAA 1 cut(s) 2070
AsuNHI GCTAGC 1 cut(s) 1654
AvaII GGWCC 2 cut(s) 1563, 2321
BaeGI GKGCMC 1 cut(s) 1998
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 4 cut(s) 152, 161, 261, 1102
BauI CACGAG 2 cut(s) 578, 2300
BbrPI CACGTG 1 cut(s) 1112
BbsI GAAGAC 1 cut(s) 538
Bbv12I GWGCWC 4 cut(s) 161, 261, 1054, 1998
BbvI GCAGC 9 cut(s) 69, 245, 274, 1019, 1052, 1423, 1519, 1615, 1916
BccI CCATC 5 cut(s) 104, 735, 1026, 1088, 1604
BceAI ACGGC 3 cut(s) 66, 618, 1028
BciT130I CCWGG 4 cut(s) 44, 1332, 1529, 1725
BciVI GTATCC 2 cut(s) 1963, 2110
BclI TGATCA 3 cut(s) 265, 475, 1882
BcnI CCSGG 2 cut(s) 163, 274
BcoDI GTCTC 1 cut(s) 894
BfaI CTAG 7 cut(s) 14, 278, 513, 1238, 1524, 1655, 1755
BfmI CTRYAG 3 cut(s) 231, 1629, 2047
BfrI CTTAAG 3 cut(s) 461, 1256, 2165
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 2 cut(s) 1963, 2110
BglII AGATCT 1 cut(s) 1430
Bme1390I CCNGG 6 cut(s) 44, 163, 274, 1332, 1529, 1725
Bme18I GGWCC 2 cut(s) 1563, 2321
BmgBI CACGTC 1 cut(s) 561
BmgT120I GGNCC 5 cut(s) 889, 1264, 1563, 1780, 2321
BmiI GGNNCC 7 cut(s) 62, 128, 149, 252, 1101, 1650, 1729
BmrFI CCNGG 6 cut(s) 44, 163, 274, 1332, 1529, 1725
BmsI GCATC 8 cut(s) 184, 216, 234, 464, 629, 2092, 2161, 2288
BmtI GCTAGC 1 cut(s) 1658
BoxI GACNNNNGTC 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 538
BplI GAGNNNNNCTC 4 cut(s) 2230, 2262, 2254, 2286
Bpu10I CCTNAGC 2 cut(s) 255, 1104
Bpu14I TTCGAA 1 cut(s) 2070
BpuEI CTTGAG 1 cut(s) 1532
BpuMI CCSGG 2 cut(s) 163, 274
BsaAI YACGTR 2 cut(s) 1112, 1849
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 3 cut(s) 399, 1318, 1731
BsaXI ACNNNNNCTCC 4 cut(s) 891, 921, 1029, 1059
Bsc4I CCNNNNNNNGG 2 cut(s) 49, 1577
Bse1I ACTGG 1 cut(s) 2293
Bse3DI GCAATG 2 cut(s) 1722, 2112
BseBI CCWGG 4 cut(s) 44, 1332, 1529, 1725
BseDI CCNNGG 3 cut(s) 399, 1318, 1731
BseGI GGATG 8 cut(s) 199, 231, 249, 727, 1314, 2107, 2176, 2182
BseLI CCNNNNNNNGG 2 cut(s) 49, 1577
BseMI GCAATG 2 cut(s) 1722, 2112
BseMII CTCAG 5 cut(s) 230, 246, 924, 1073, 1095
BseNI ACTGG 1 cut(s) 2293
BseSI GKGCMC 1 cut(s) 1998
BseXI GCAGC 9 cut(s) 69, 245, 274, 1019, 1052, 1423, 1519, 1615, 1916
BseYI CCCAGC 1 cut(s) 1777
BsgI GTGCAG 1 cut(s) 1923
Bsh1236I CGCG 2 cut(s) 1030, 1918
BshFI GGCC 8 cut(s) 865, 891, 1265, 1532, 1782, 1915, 1944, 2159
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 4 cut(s) 161, 261, 1054, 1998
BsiSI CCGG 3 cut(s) 162, 248, 273
BslFI GGGAC 2 cut(s) 178, 431
BslI CCNNNNNNNGG 2 cut(s) 49, 1577
BsmAI GTCTC 1 cut(s) 894
BsmFI GGGAC 2 cut(s) 178, 431
BsmI GAATGC 2 cut(s) 1223, 2078
BsnI GGCC 8 cut(s) 865, 891, 1265, 1532, 1782, 1915, 1944, 2159
Bsp119I TTCGAA 1 cut(s) 2070
Bsp1286I GDGCHC 6 cut(s) 152, 161, 261, 1054, 1102, 1998
Bsp1407I TGTACA 2 cut(s) 2179, 2208
Bsp143I GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
Bsp68I TCGCGA 1 cut(s) 1030
BspACI CCGC 7 cut(s) 5, 85, 353, 671, 1162, 1652, 1916
BspANI GGCC 8 cut(s) 865, 891, 1265, 1532, 1782, 1915, 1944, 2159
BspCNI CTCAG 5 cut(s) 231, 247, 925, 1072, 1096
BspFNI CGCG 2 cut(s) 1030, 1918
BspLI GGNNCC 7 cut(s) 62, 128, 149, 252, 1101, 1650, 1729
BspMAI CTGCAG 2 cut(s) 235, 1633
BspMI ACCTGC 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 1658
BspPI GGATC 4 cut(s) 15, 146, 671, 980
BspT104I TTCGAA 1 cut(s) 2070
BspT107I GGYRCC 1 cut(s) 126
BspTI CTTAAG 3 cut(s) 461, 1256, 2165
BsrDI GCAATG 2 cut(s) 1722, 2112
BsrGI TGTACA 2 cut(s) 2179, 2208
BsrI ACTGG 1 cut(s) 2293
BssECI CCNNGG 3 cut(s) 399, 1318, 1731
BssMI GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
BssNI GRCGYC 1 cut(s) 26
BssSI CACGAG 2 cut(s) 578, 2300
BssT1I CCWWGG 3 cut(s) 399, 1318, 1731
Bst2BI CACGAG 2 cut(s) 578, 2300
Bst2UI CCWGG 4 cut(s) 44, 1332, 1529, 1725
Bst4CI ACNGT 4 cut(s) 340, 592, 1764, 2122
Bst6I CTCTTC 2 cut(s) 794, 2229
BstACI GRCGYC 1 cut(s) 26
BstAFI CTTAAG 3 cut(s) 461, 1256, 2165
BstAUI TGTACA 2 cut(s) 2179, 2208
BstBAI YACGTR 2 cut(s) 1112, 1849
BstBI TTCGAA 1 cut(s) 2070
BstC8I GCNNGC 3 cut(s) 231, 1005, 1656
BstDEI CTNAG 6 cut(s) 239, 255, 933, 1059, 1104, 2337
BstF5I GGATG 8 cut(s) 199, 231, 249, 727, 1314, 2107, 2176, 2182
BstFNI CGCG 2 cut(s) 1030, 1918
BstKTI GATC 9 cut(s) 10, 141, 268, 478, 643, 679, 988, 1433, 1885
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
BstMWI GCNNNNNNNGC 6 cut(s) 91, 156, 1049, 1168, 1496, 1921
BstNI CCWGG 4 cut(s) 44, 1332, 1529, 1725
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 6 cut(s) 42, 161, 272, 1330, 1527, 1723
BstSFI CTRYAG 3 cut(s) 231, 1629, 2047
BstSLI GKGCMC 1 cut(s) 1998
BstUI CGCG 2 cut(s) 1030, 1918
BstV1I GCAGC 9 cut(s) 69, 245, 274, 1019, 1052, 1423, 1519, 1615, 1916
BstV2I GAAGAC 1 cut(s) 538
BstX2I RGATCY 3 cut(s) 7, 676, 1430
BstYI RGATCY 3 cut(s) 7, 676, 1430
BsuI GTATCC 2 cut(s) 1963, 2110
BsuRI GGCC 8 cut(s) 865, 891, 1265, 1532, 1782, 1915, 1944, 2159
BtgZI GCGATG 1 cut(s) 1045
BtrI CACGTC 1 cut(s) 561
BtsCI GGATG 8 cut(s) 199, 231, 249, 727, 1314, 2107, 2176, 2182
BtsIMutI CAGTG 3 cut(s) 236, 597, 700
BtuMI TCGCGA 1 cut(s) 1030
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 3 cut(s) 231, 1005, 1656
CaiI CAGNNNCTG 1 cut(s) 680
Cfr13I GGNCC 5 cut(s) 889, 1264, 1563, 1780, 2321
CseI GACGC 1 cut(s) 920
Csp6I GTAC 7 cut(s) 127, 308, 583, 668, 823, 2180, 2209
CviAII CATG 4 cut(s) 199, 1174, 1384, 1567
CviQI GTAC 7 cut(s) 127, 308, 583, 668, 823, 2180, 2209
DdeI CTNAG 6 cut(s) 239, 255, 933, 1059, 1104, 2337
DpnI GATC 9 cut(s) 9, 140, 267, 477, 642, 678, 987, 1432, 1884
DpnII GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
DraI TTTAAA 1 cut(s) 1548
EaeI YGGCCR 1 cut(s) 1913
Eam1104I CTCTTC 2 cut(s) 794, 2229
EarI CTCTTC 2 cut(s) 794, 2229
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 159, 259
Eco130I CCWWGG 3 cut(s) 399, 1318, 1731
Eco147I AGGCCT 2 cut(s) 865, 1532
Eco24I GRGCYC 4 cut(s) 152, 161, 261, 1102
Eco47I GGWCC 2 cut(s) 1563, 2321
Eco53kI GAGCTC 2 cut(s) 159, 259
Eco57I CTGAAG 4 cut(s) 74, 1011, 2328, 2337
Eco72I CACGTG 1 cut(s) 1112
EcoICRI GAGCTC 2 cut(s) 159, 259
EcoO109I RGGNCCY 2 cut(s) 1264, 2321
EcoRII CCWGG 4 cut(s) 42, 1330, 1527, 1723
EcoT14I CCWWGG 3 cut(s) 399, 1318, 1731
EcoT38I GRGCYC 4 cut(s) 152, 161, 261, 1102
ErhI CCWWGG 3 cut(s) 399, 1318, 1731
FaeI CATG 4 cut(s) 202, 1177, 1387, 1570
FalI AAGNNNNNCTT 4 cut(s) 311, 343, 1311, 1343
FaqI GGGAC 2 cut(s) 178, 431
FatI CATG 4 cut(s) 198, 1173, 1383, 1566
FauNDI CATATG 1 cut(s) 1926
FbaI TGATCA 3 cut(s) 265, 475, 1882
FblI GTMKAC 1 cut(s) 111
FokI GGATG 8 cut(s) 206, 238, 256, 714, 1301, 2114, 2169, 2183
FriOI GRGCYC 4 cut(s) 152, 161, 261, 1102
FspBI CTAG 7 cut(s) 14, 278, 513, 1238, 1524, 1655, 1755
GsaI CCCAGC 1 cut(s) 1781
HaeIII GGCC 8 cut(s) 865, 891, 1265, 1532, 1782, 1915, 1944, 2159
HapII CCGG 3 cut(s) 162, 248, 273
HgaI GACGC 1 cut(s) 920
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 4 cut(s) 202, 1177, 1387, 1570
HincII GTYRAC 2 cut(s) 187, 1089
HindII GTYRAC 2 cut(s) 187, 1089
HinfI GANTC 9 cut(s) 108, 281, 361, 686, 1213, 1372, 1720, 2052, 2303
HpaII CCGG 3 cut(s) 162, 248, 273
HphI GGTGA 1 cut(s) 1853
Hpy166II GTNNAC 8 cut(s) 112, 187, 724, 823, 910, 1089, 1996, 2297
Hpy188I TCNGA 8 cut(s) 143, 219, 300, 1540, 1643, 1887, 2308, 2317
Hpy8I GTNNAC 8 cut(s) 112, 187, 724, 823, 910, 1089, 1996, 2297
Hpy99I CGWCG 2 cut(s) 52, 157
HpyAV CCTTC 4 cut(s) 1255, 1277, 2303, 2312
HpyCH4III ACNGT 4 cut(s) 340, 592, 1764, 2122
HpyCH4IV ACGT 5 cut(s) 26, 560, 1111, 1146, 1848
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 156, 1049, 1168, 1496, 1921
HpyF3I CTNAG 6 cut(s) 239, 255, 933, 1059, 1104, 2337
HpySE526I ACGT 5 cut(s) 26, 560, 1111, 1146, 1848
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 4 cut(s) 202, 1177, 1387, 1570
KpnI GGTACC 1 cut(s) 130
Ksp22I TGATCA 3 cut(s) 265, 475, 1882
Kzo9I GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
LmnI GCTCC 5 cut(s) 147, 164, 250, 1037, 1105
Lsp1109I GCAGC 9 cut(s) 69, 245, 274, 1019, 1052, 1423, 1519, 1615, 1916
LweI GCATC 8 cut(s) 184, 216, 234, 464, 629, 2092, 2161, 2288
MaeI CTAG 7 cut(s) 14, 278, 513, 1238, 1524, 1655, 1755
MaeII ACGT 5 cut(s) 26, 560, 1111, 1146, 1848
MaeIII GTNAC 4 cut(s) 1112, 1798, 1859, 2083
MalI GATC 9 cut(s) 9, 140, 267, 477, 642, 678, 987, 1432, 1884
MboI GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 3 cut(s) 7, 676, 1430
MhlI GDGCHC 6 cut(s) 152, 161, 261, 1054, 1102, 1998
MlyI GAGTC 4 cut(s) 117, 275, 2061, 2312
MmeI TCCRAC 1 cut(s) 1595
MroXI GAANNNNTTC 3 cut(s) 323, 1132, 1349
MseI TTAA 8 cut(s) 39, 462, 1257, 1305, 1547, 1689, 1872, 2166
MslI CAYNNNNRTG 2 cut(s) 1571, 1929
MspCI CTTAAG 3 cut(s) 461, 1256, 2165
MspI CCGG 3 cut(s) 162, 248, 273
MspR9I CCNGG 6 cut(s) 44, 163, 274, 1332, 1529, 1725
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 1223, 2078
MvaI CCWGG 4 cut(s) 44, 1332, 1529, 1725
MvnI CGCG 2 cut(s) 1030, 1918
MwoI GCNNNNNNNGC 6 cut(s) 91, 156, 1049, 1168, 1496, 1921
NciI CCSGG 2 cut(s) 163, 274
NdeI CATATG 1 cut(s) 1926
NdeII GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
NheI GCTAGC 1 cut(s) 1654
NlaIII CATG 4 cut(s) 202, 1177, 1387, 1570
NlaIV GGNNCC 7 cut(s) 62, 128, 149, 252, 1101, 1650, 1729
NmuCI GTSAC 4 cut(s) 1112, 1798, 1859, 2083
NruI TCGCGA 1 cut(s) 1030
NspV TTCGAA 1 cut(s) 2070
PceI AGGCCT 2 cut(s) 865, 1532
PctI GAATGC 2 cut(s) 1223, 2078
PdmI GAANNNNTTC 3 cut(s) 323, 1132, 1349
PfeI GAWTC 5 cut(s) 361, 686, 1213, 1372, 1720
PflFI GACNNNGTC 1 cut(s) 107
PfoI TCCNGGA 2 cut(s) 161, 1330
PleI GAGTC 4 cut(s) 116, 275, 2060, 2311
PmaCI CACGTG 1 cut(s) 1112
PmlI CACGTG 1 cut(s) 1112
PpsI GAGTC 4 cut(s) 116, 275, 2060, 2311
Ppu21I YACGTR 2 cut(s) 1112, 1849
PpuMI RGGWCCY 1 cut(s) 2321
PshAI GACNNNNGTC 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 1872
Psp124BI GAGCTC 2 cut(s) 161, 261
Psp5II RGGWCCY 1 cut(s) 2321
Psp6I CCWGG 4 cut(s) 42, 1330, 1527, 1723
PspCI CACGTG 1 cut(s) 1112
PspFI CCCAGC 1 cut(s) 1777
PspGI CCWGG 4 cut(s) 42, 1330, 1527, 1723
PspN4I GGNNCC 7 cut(s) 62, 128, 149, 252, 1101, 1650, 1729
PspPI GGNCC 5 cut(s) 889, 1264, 1563, 1780, 2321
PspPPI RGGWCCY 1 cut(s) 2321
PsrI GAACNNNNNNTAC 2 cut(s) 1743, 1775
PstI CTGCAG 2 cut(s) 235, 1633
PstNI CAGNNNCTG 1 cut(s) 680
PsuI RGATCY 3 cut(s) 7, 676, 1430
PsyI GACNNNGTC 1 cut(s) 107
RruI TCGCGA 1 cut(s) 1030
RsaI GTAC 7 cut(s) 128, 309, 584, 669, 824, 2181, 2210
RsaNI GTAC 7 cut(s) 127, 308, 583, 668, 823, 2180, 2209
RseI CAYNNNNRTG 2 cut(s) 1571, 1929
SacI GAGCTC 2 cut(s) 161, 261
SaqAI TTAA 8 cut(s) 39, 462, 1257, 1305, 1547, 1689, 1872, 2166
Sau3AI GATC 9 cut(s) 7, 138, 265, 475, 640, 676, 985, 1430, 1882
Sau96I GGNCC 5 cut(s) 889, 1264, 1563, 1780, 2321
SchI GAGTC 4 cut(s) 117, 275, 2061, 2312
ScrFI CCNGG 6 cut(s) 44, 163, 274, 1332, 1529, 1725
SduI GDGCHC 6 cut(s) 152, 161, 261, 1054, 1102, 1998
SfaNI GCATC 8 cut(s) 184, 216, 234, 464, 629, 2092, 2161, 2288
SfcI CTRYAG 3 cut(s) 231, 1629, 2047
SfuI TTCGAA 1 cut(s) 2070
SinI GGWCC 2 cut(s) 1563, 2321
SmiMI CAYNNNNRTG 2 cut(s) 1571, 1929
SmlI CTYRAG 4 cut(s) 461, 1256, 1511, 2165
SmoI CTYRAG 4 cut(s) 461, 1256, 1511, 2165
SseBI AGGCCT 2 cut(s) 865, 1532
SsiI CCGC 7 cut(s) 5, 85, 353, 671, 1162, 1652, 1916
SspI AATATT 2 cut(s) 1483, 1544
SspMI CTAG 7 cut(s) 14, 278, 513, 1238, 1524, 1655, 1755
SstI GAGCTC 2 cut(s) 161, 261
StuI AGGCCT 2 cut(s) 865, 1532
StyD4I CCNGG 6 cut(s) 42, 161, 272, 1330, 1527, 1723
StyI CCWWGG 3 cut(s) 399, 1318, 1731
TaaI ACNGT 4 cut(s) 340, 592, 1764, 2122
TaiI ACGT 5 cut(s) 29, 563, 1114, 1149, 1851
TaqI TCGA 2 cut(s) 705, 2070
TatI WGTACW 5 cut(s) 307, 582, 822, 2179, 2208
TauI GCSGC 2 cut(s) 88, 1918
TfiI GAWTC 5 cut(s) 361, 686, 1213, 1372, 1720
Tru1I TTAA 8 cut(s) 39, 462, 1257, 1305, 1547, 1689, 1872, 2166
Tru9I TTAA 8 cut(s) 39, 462, 1257, 1305, 1547, 1689, 1872, 2166
TscAI CASTG 3 cut(s) 243, 597, 700
TseFI GTSAC 4 cut(s) 1112, 1798, 1859, 2083
TseI GCWGC 9 cut(s) 82, 233, 287, 1007, 1040, 1436, 1507, 1628, 1904
Tsp45I GTSAC 4 cut(s) 1112, 1798, 1859, 2083
TspDTI ATGAA 8 cut(s) 508, 699, 1008, 1444, 1579, 1589, 1733, 1764
TspGWI ACGGA 1 cut(s) 1847
TspRI CASTG 3 cut(s) 243, 597, 700
Tth111I GACNNNGTC 1 cut(s) 107
Vha464I CTTAAG 3 cut(s) 461, 1256, 2165
VneI GTGCAC 1 cut(s) 1994
VpaK11BI GGWCC 2 cut(s) 1563, 2321
VspI ATTAAT 1 cut(s) 1872
XapI RAATTY 3 cut(s) 497, 1517, 2149
XbaI TCTAGA 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 111
XmnI GAANNNNTTC 3 cut(s) 323, 1132, 1349
XspI CTAG 7 cut(s) 14, 278, 513, 1238, 1524, 1655, 1755
ZraI GACGTC 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.