Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002174

Physical Location & Seq

Genomic Coordinates Reverse (-)

4937386 .. 4938673

Gene Structure 1288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1043800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTGTGAGAAAGAAAGATGTGATCCTAAAAAAATTGACTGGTCACAGACTATGGACCAATTTTTCGTTGAACTAATGTTAGATGAAGTGCGCAAAGGAAATAAGGTTGGTCGCACTTTCAAGAAAAAATCATGGATTACCATGATCACATGCTTTAATGAGAAATTCGGGTTTCAGCATGGTAGGGCGGTATTGAAAAATCGGTACAATGTGTTCAGGAAACATTACAGTAGCGTTAACATTCCGCTTGATCAAAAGGGTTTTACTTGGGATGAAACACAACAGAAGGTGGTGGCTGATGATCCGGTCTGGAACAAGTATATCCAGGCACATCCCAGTTTGCACATGGACAGAAATAAAGTTATGTCATATTATTCCGATTTGTGTATCATGCGTGGAAATGACGCTAGATTTTTGAAAAAGTTCCATCAAGCTGCAATCGAGCTCTTTACAAGGGAACCATTGCCAAGAAAATTTACGGAGATGCTCAGAAGAAGTCAATGGGTTGAAGTGATGTCAAGAATTTTTCAGATCAAAAGGAAAGGCACGTCCTGTAAGCACACAAACCTTACAACAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

194

Amino Acids

23.14

Weight (kDa)

9.77

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	14 - 107	9.8e-27	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24960 AT2G24960
malus_domestica	MD04G1207700.v1.1 MD12G1043800.v1.1 MD14G1042600.v1.1 MD15G1042400.v1.1
prunus_persica	Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.4G276100_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1
pyrus_communis	pycom04g18390 pycom12g03760 pycom14g03630 pycom15g03950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	92
AciI	CCGC	2 cut(s)	188, 245
AclWI	GGATC	2 cut(s)	17, 296
AcsI	RAATTY	3 cut(s)	164, 473, 522
AfaI	GTAC	1 cut(s)	206
AgsI	TTSAA	5 cut(s)	71, 121, 196, 418, 509
AjiI	CACGTC	1 cut(s)	549
AjnI	CCWGG	1 cut(s)	324
AluBI	AGCT	2 cut(s)	434, 445
AluI	AGCT	2 cut(s)	434, 445
Alw21I	GWGCWC	1 cut(s)	447
AlwI	GGATC	2 cut(s)	17, 296
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	3 cut(s)	164, 473, 522
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
Asp700I	GAANNNNTTC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	93
AspS9I	GGNCC	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	55
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	421
BccI	CCATC	1 cut(s)	435
BciT130I	CCWGG	1 cut(s)	326
BclI	TGATCA	2 cut(s)	144, 250
BfaI	CTAG	1 cut(s)	408
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	549
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	326
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	1 cut(s)	474
BmuI	ACTGGG	1 cut(s)	330
BsaWI	WCCGGW	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	44, 336
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	277, 331
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	1 cut(s)	502
BseNI	ACTGG	2 cut(s)	44, 336
BseXI	GCAGC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	5 cut(s)	22, 144, 250, 301, 531
BspACI	CCGC	2 cut(s)	188, 245
BspCNI	CTCAG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	459
BspPI	GGATC	2 cut(s)	17, 296
BsrDI	GCAATG	1 cut(s)	461
BsrI	ACTGG	2 cut(s)	44, 336
BssMI	GATC	5 cut(s)	22, 144, 250, 301, 531
Bst2UI	CCWGG	1 cut(s)	326
Bst4CI	ACNGT	2 cut(s)	230, 577
BstDEI	CTNAG	1 cut(s)	488
BstF5I	GGATG	2 cut(s)	277, 331
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	5 cut(s)	25, 147, 253, 304, 534
BstMBI	GATC	5 cut(s)	22, 144, 250, 301, 531
BstNI	CCWGG	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	153
BstSCI	CCNGG	1 cut(s)	324
BstV1I	GCAGC	1 cut(s)	421
BtrI	CACGTC	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	277, 331
CfoI	GCGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	6 cut(s)	132, 142, 150, 179, 346, 391
CviJI	RGCY	3 cut(s)	296, 434, 445
CviKI_1	RGCY	3 cut(s)	296, 434, 445
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	5 cut(s)	24, 146, 252, 303, 533
DpnII	GATC	5 cut(s)	22, 144, 250, 301, 531
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	447
FaeI	CATG	6 cut(s)	135, 145, 153, 182, 349, 394
FatI	CATG	6 cut(s)	131, 141, 149, 178, 345, 390
FbaI	TGATCA	2 cut(s)	144, 250
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	284, 318
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	408
FspI	TGCGCA	1 cut(s)	92
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	435
HapII	CCGG	1 cut(s)	305
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	1 cut(s)	93
Hin1II	CATG	6 cut(s)	135, 145, 153, 182, 349, 394
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	3 cut(s)	379, 491, 531
Hpy188III	TCNNGA	4 cut(s)	121, 217, 310, 519
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	2 cut(s)	230, 577
HpyCH4IV	ACGT	1 cut(s)	548
HpyCH4V	TGCA	2 cut(s)	343, 437
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	1 cut(s)	548
Hsp92II	CATG	6 cut(s)	135, 145, 153, 182, 349, 394
HspAI	GCGC	1 cut(s)	91
Ksp22I	TGATCA	2 cut(s)	144, 250
KspAI	GTTAAC	1 cut(s)	238
Kzo9I	GATC	5 cut(s)	22, 144, 250, 301, 531
LpnPI	CCDG	8 cut(s)	25, 202, 295, 311, 318, 338, 349, 565
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	1 cut(s)	548
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	5 cut(s)	24, 146, 252, 303, 533
MboI	GATC	5 cut(s)	22, 144, 250, 301, 531
MboII	GAAGA	1 cut(s)	504
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	5 cut(s)	33, 59, 164, 473, 522
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	156, 237
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	326
NdeII	GATC	5 cut(s)	22, 144, 250, 301, 531
NlaIII	CATG	6 cut(s)	135, 145, 153, 182, 349, 394
NlaIV	GGNNCC	1 cut(s)	459
NmuCI	GTSAC	1 cut(s)	42
NsbI	TGCGCA	1 cut(s)	92
NspI	RCATGY	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	324
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	2 cut(s)	156, 237
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	5 cut(s)	22, 144, 250, 301, 531
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	447
SetI	ASST	6 cut(s)	108, 291, 436, 447, 551, 570
SfaNI	GCATC	1 cut(s)	474
SinI	GGWCC	1 cut(s)	55
Sse9I	AATT	5 cut(s)	33, 59, 164, 473, 522
SsiI	CCGC	2 cut(s)	188, 245
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	324
TaaI	ACNGT	2 cut(s)	230, 577
TaiI	ACGT	1 cut(s)	551
TaqI	TCGA	1 cut(s)	441
TasI	AATT	5 cut(s)	33, 59, 164, 473, 522
Tru1I	TTAA	2 cut(s)	156, 237
Tru9I	TTAA	2 cut(s)	156, 237
TseFI	GTSAC	1 cut(s)	42
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	42
TspDTI	ATGAA	2 cut(s)	99, 288
TspGWI	ACGGA	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	3 cut(s)	164, 473, 522
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.