Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002174

Physical Location & Seq

Genomic Coordinates Forward (+)

12445448 .. 12448360

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G091300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGAATTCTGGTTTTTCTAGCACCGGTGACCATTTAAGGGCTAACTGGACTCCACCTCAAGACAGTTTCTTCATTGACCTTTTGCTAGAACAAGTGAGGAAAGGGAACAAAACTGGTCATGGATTTAGGAAACAAGGATGGGCAGATATGATTGTACTCTTTAATACCAAATTTGGATTTAAGTATGATACAGATATTCTGAAAAATCGATACAAAAGATTGAGGAAGCAGTATAGTGAGATGAAGAGCCTTGTCGATCAGGCTATTTTTAGATGGGATGAATCACAACAGATGATAACAGCTGATGATAGTGTATGGAATGACTATATCAAGGCCCACCCTGAAATGCAACCATACAGAACAAAAGTCGTTTCATATTATAACGAGTTGTGCATAATATGTGGGCATGCAGTTGCTGATGGAAGATACAGTCTTTCATGTTATGATGTAGACTTTGAAAACGAAGCAATAGGAATTGATTGTCAAGATCCCATTAATGATGATCCTAAAATTGAGTGGTCACAGACTATGGACCAATTTTTTGTTGAACTTATGTTGGATGAGGTGTGTAAAGGGAATAAGGTCGGTCGCTCTTTCAAGAAGAAATCATGGGTGTCCATGATCACATCTTTTAATGAGAAATTCGGGTTTCAGCATGGTAGGGCTGTCTTGAAAAACCGGTACAGTATATTTAGGAGGCATTACAGTAGCATTAAGATTCTGCTTGATCAAAGGGGGTTTAAGTGGGATGAAACAGAACAAAAGATGGTGGCTGATGATCGGGTCTGGAATAAATATATCAAGGCACATCCCAGTTTTCATATGTATAGAAATAAAGCTATGCCATATTATTCTGATATGTGCATCATATGTGGAAATGAAGCTAGAATTTTGAAAAAAGCTACTTCAAGTTGCAATCTAGCTCTTGATAAGGGAACCCTTGCTAAGAAAACTGATGGAGAAGCTATGCCTATTGTTGACAAACATTATGCTCAAGGAAAACCATTAGGTTCAGGTAGTGTCAAGAATTTATCAGATCAAAAGAAAAGGCATTGTCCTCAAATACCAGAAACCTTACAACAGTCTAAAAAAGCACGAAGAACGGATGGAGTTGTGGCCGTTAATGCTTTAGAAGATATGGCAGTCGCAGTGTCTTCATTGAAGAAGAAACTAAAGAAAGAGGAATCTGTATCCATAGAAAAGGTTATTGGTGTCTTGAAATCTATACCAGACATCGACGATGATCTATTACTAGATGCCTGTGACTTTTTAGAGGATGAAGGGAGAGCCAGAATGTTTTTAGCACTGGATGCGGCTCTCCGAAAGAAGTGGTTGATGAGAAAGCTTCGTCCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-bind_3

Protein Analysis

453

Amino Acids

52.18

Weight (kDa)

9.01

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24960 AT2G24960
malus_domestica	MD04G1207700.v1.1 MD12G1043800.v1.1 MD14G1042600.v1.1 MD15G1042400.v1.1
prunus_persica	Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.1G395600_v2.0.a1 Prupe.4G276100_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.6G328700_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1 Prupe.7G091300_v2.0.a1
pyrus_communis	pycom04g18390 pycom12g03760 pycom14g03630 pycom15g03950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	381
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	1 cut(s)	1313
AclWI	GGATC	2 cut(s)	482, 497
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	5 cut(s)	4, 170, 641, 888, 1027
AfaI	GTAC	2 cut(s)	156, 683
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgeI	ACCGGT	2 cut(s)	23, 678
AgsI	TTSAA	8 cut(s)	458, 548, 598, 673, 895, 909, 1162, 1219
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
AluBI	AGCT	7 cut(s)	302, 839, 884, 902, 923, 965, 1345
AluI	AGCT	7 cut(s)	302, 839, 884, 902, 923, 965, 1345
AlwI	GGATC	2 cut(s)	482, 497
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	333, 1116
ApoI	RAATTY	5 cut(s)	4, 170, 641, 888, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
AseI	ATTAAT	1 cut(s)	495
AsiGI	ACCGGT	2 cut(s)	23, 678
AspS9I	GGNCC	2 cut(s)	334, 532
AsuHPI	GGTGA	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	1146
BccI	CCATC	6 cut(s)	132, 267, 413, 760, 950, 1100
BceAI	ACGGC	1 cut(s)	1103
BciVI	GTATCC	1 cut(s)	1201
BclI	TGATCA	2 cut(s)	621, 727
BfaI	CTAG	5 cut(s)	18, 86, 885, 920, 1253
BfuI	GTATCC	1 cut(s)	1201
BisI	GCNGC	1 cut(s)	1314
BlsI	GCNGC	1 cut(s)	1315
Bme18I	GGWCC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	334, 532
BmiI	GGNNCC	1 cut(s)	937
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	3 cut(s)	873, 1246, 1300
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	1146
BpuEI	CTTGAG	2 cut(s)	42, 978
Bsa29I	ATCGAT	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	23, 678
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse118I	RCCGGY	2 cut(s)	23, 678
Bse1I	ACTGG	4 cut(s)	50, 118, 813, 1311
BseCI	ATCGAT	1 cut(s)	208
BseGI	GGATG	8 cut(s)	143, 283, 565, 754, 808, 1111, 1282, 1315
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseNI	ACTGG	4 cut(s)	50, 118, 813, 1311
Bsh1285I	CGRYCG	1 cut(s)	589
BshFI	GGCC	2 cut(s)	335, 1118
BshTI	ACCGGT	2 cut(s)	23, 678
BshVI	ATCGAT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	589
BsiSI	CCGG	2 cut(s)	24, 679
BslI	CCNNNNNNNGG	1 cut(s)	37
BsnI	GGCC	2 cut(s)	335, 1118
Bsp143I	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
BspACI	CCGC	1 cut(s)	1313
BspANI	GGCC	2 cut(s)	335, 1118
BspDI	ATCGAT	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	937
BspPI	GGATC	2 cut(s)	482, 497
BspQI	GCTCTTC	1 cut(s)	239
BsrFI	RCCGGY	2 cut(s)	23, 678
BsrI	ACTGG	4 cut(s)	50, 118, 813, 1311
BssAI	RCCGGY	2 cut(s)	23, 678
BssMI	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
Bst4CI	ACNGT	6 cut(s)	65, 431, 686, 707, 1083, 1356
Bst6I	CTCTTC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	1310
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	945
BstEII	GGTNACC	1 cut(s)	26
BstF5I	GGATG	8 cut(s)	143, 283, 565, 754, 808, 1111, 1282, 1315
BstKTI	GATC	8 cut(s)	259, 490, 505, 624, 730, 781, 1039, 1246
BstMBI	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
BstMCI	CGRYCG	1 cut(s)	589
BstMWI	GCNNNNNNNGC	2 cut(s)	1124, 1310
BstNSI	RCATGY	1 cut(s)	410
BstPI	GGTNACC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	1146
BstX2I	RGATCY	1 cut(s)	487
BstYI	RGATCY	1 cut(s)	487
Bsu15I	ATCGAT	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	1201
BsuRI	GGCC	2 cut(s)	335, 1118
BsuTUI	ATCGAT	1 cut(s)	208
BtsCI	GGATG	8 cut(s)	143, 283, 565, 754, 808, 1111, 1282, 1315
BtsI	GCAGTG	1 cut(s)	1155
BtsIMutI	CAGTG	2 cut(s)	1155, 1304
Cac8I	GCNNGC	1 cut(s)	408
CaiI	CAGNNNCTG	1 cut(s)	416
Cfr10I	RCCGGY	2 cut(s)	23, 678
Cfr13I	GGNCC	2 cut(s)	334, 532
ClaI	ATCGAT	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	155, 682
CspAI	ACCGGT	2 cut(s)	23, 678
CviAII	CATG	6 cut(s)	119, 407, 438, 609, 619, 656
CviQI	GTAC	2 cut(s)	155, 682
DdeI	CTNAG	1 cut(s)	945
DpnI	GATC	8 cut(s)	258, 489, 504, 623, 729, 780, 1038, 1245
DpnII	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	532
Eco91I	GGTNACC	1 cut(s)	26
EcoO65I	GGTNACC	1 cut(s)	26
EcoRI	GAATTC	1 cut(s)	4
FaeI	CATG	6 cut(s)	122, 410, 441, 612, 622, 659
FatI	CATG	6 cut(s)	118, 406, 437, 608, 618, 655
FauNDI	CATATG	2 cut(s)	822, 869
FbaI	TGATCA	2 cut(s)	621, 727
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	1 cut(s)	1314
FokI	GGATG	8 cut(s)	150, 290, 572, 761, 795, 1118, 1289, 1322
Fsp4HI	GCNGC	1 cut(s)	1314
FspBI	CTAG	5 cut(s)	18, 86, 885, 920, 1253
GluI	GCNGC	1 cut(s)	1314
HaeIII	GGCC	2 cut(s)	335, 1118
HapII	CCGG	2 cut(s)	24, 679
Hin1II	CATG	6 cut(s)	122, 410, 441, 612, 622, 659
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	1343
HinfI	GANTC	4 cut(s)	49, 281, 718, 1184
HpaII	CCGG	2 cut(s)	24, 679
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	3 cut(s)	451, 979, 1352
Hpy188I	TCNGA	4 cut(s)	201, 856, 1036, 1322
Hpy188III	TCNNGA	8 cut(s)	59, 485, 598, 670, 787, 926, 1024, 1216
Hpy8I	GTNNAC	3 cut(s)	451, 979, 1352
Hpy99I	CGWCG	1 cut(s)	1241
HpyAV	CCTTC	1 cut(s)	1274
HpyCH4III	ACNGT	6 cut(s)	65, 431, 686, 707, 1083, 1356
HpyCH4V	TGCA	5 cut(s)	349, 393, 410, 864, 915
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1124, 1310
HpyF3I	CTNAG	1 cut(s)	945
Hsp92II	CATG	6 cut(s)	122, 410, 441, 612, 622, 659
Ksp22I	TGATCA	2 cut(s)	621, 727
Kzo9I	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
LguI	GCTCTTC	1 cut(s)	239
LweI	GCATC	3 cut(s)	873, 1246, 1300
MaeI	CTAG	5 cut(s)	18, 86, 885, 920, 1253
MaeIII	GTNAC	3 cut(s)	26, 519, 1262
MalI	GATC	8 cut(s)	258, 489, 504, 623, 729, 780, 1038, 1245
MboI	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
MboII	GAAGA	9 cut(s)	61, 256, 435, 613, 1110, 1145, 1146, 1174, 1177
MflI	RGATCY	1 cut(s)	487
MluCI	AATT	8 cut(s)	4, 170, 474, 510, 536, 641, 888, 1027
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	8 cut(s)	66, 90, 216, 556, 690, 1068, 1174, 1267
MseI	TTAA	8 cut(s)	35, 162, 180, 495, 633, 714, 741, 1122
MspA1I	CMGCKG	1 cut(s)	302
MspI	CCGG	2 cut(s)	24, 679
MwoI	GCNNNNNNNGC	2 cut(s)	1124, 1310
NdeI	CATATG	2 cut(s)	822, 869
NdeII	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
NlaIII	CATG	6 cut(s)	122, 410, 441, 612, 622, 659
NlaIV	GGNNCC	1 cut(s)	937
NmuCI	GTSAC	3 cut(s)	26, 519, 1262
NspI	RCATGY	1 cut(s)	410
PaeI	GCATGC	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	239
PfeI	GAWTC	3 cut(s)	281, 718, 1184
PinAI	ACCGGT	2 cut(s)	23, 678
PkrI	GCNGC	1 cut(s)	1315
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PshBI	ATTAAT	1 cut(s)	495
PsiI	TTATAA	1 cut(s)	381
PspEI	GGTNACC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	937
PspPI	GGNCC	2 cut(s)	334, 532
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	487
PvuII	CAGCTG	1 cut(s)	302
RsaI	GTAC	2 cut(s)	156, 683
RsaNI	GTAC	2 cut(s)	155, 682
SapI	GCTCTTC	1 cut(s)	239
SaqAI	TTAA	8 cut(s)	35, 162, 180, 495, 633, 714, 741, 1122
SatI	GCNGC	1 cut(s)	1314
Sau3AI	GATC	8 cut(s)	256, 487, 502, 621, 727, 778, 1036, 1243
Sau96I	GGNCC	2 cut(s)	334, 532
SchI	GAGTC	1 cut(s)	43
SfaNI	GCATC	3 cut(s)	873, 1246, 1300
SgrAI	CRCCGGYG	1 cut(s)	23
SinI	GGWCC	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	57, 993
SmoI	CTYRAG	2 cut(s)	57, 993
SphI	GCATGC	1 cut(s)	410
Sse9I	AATT	8 cut(s)	4, 170, 474, 510, 536, 641, 888, 1027
SsiI	CCGC	1 cut(s)	1313
SspMI	CTAG	5 cut(s)	18, 86, 885, 920, 1253
TaaI	ACNGT	6 cut(s)	65, 431, 686, 707, 1083, 1356
TaqI	TCGA	3 cut(s)	208, 255, 1236
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	8 cut(s)	4, 170, 474, 510, 536, 641, 888, 1027
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	1 cut(s)	1316
TfiI	GAWTC	3 cut(s)	281, 718, 1184
Tru1I	TTAA	8 cut(s)	35, 162, 180, 495, 633, 714, 741, 1122
Tru9I	TTAA	8 cut(s)	35, 162, 180, 495, 633, 714, 741, 1122
TscAI	CASTG	2 cut(s)	1155, 1311
TseFI	GTSAC	3 cut(s)	26, 519, 1262
Tsp45I	GTSAC	3 cut(s)	26, 519, 1262
TspGWI	ACGGA	1 cut(s)	1118
TspRI	CASTG	2 cut(s)	1155, 1311
VpaK11BI	GGWCC	1 cut(s)	532
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	5 cut(s)	4, 170, 641, 888, 1027
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	5 cut(s)	18, 86, 885, 920, 1253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.