pycom14g03630
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0002174
Physical Location & Seq
Reverse (-)
3051487 .. 3054770
3284 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g03630.4

Sequence Viewer

Length: 1389 bp
ATGGATGAAAACAAATCCAAAGCCAAACAGAGGTATTCTCTCTCTTATCCCAGGACAACCTTATTCCCCATTTGTCAGCCACAGCTCGTTGGCTCAAACGGCAGTCACAACGGGTTAAAGATGTATGCCGGTTCTTCTACCACCAGTGACCATGTAAGGGCTAACTGGACTCCATCACAAGACAGTTTCTTCATTGACCTTATGCTAGAACAATATGATACAGATATTCTGAAAAATCGATACAAAAGATTGAGGAAGCAGTACAGCGAGATGAAGAGTCTTGTTGATCAGGGAAACTTTAGATGGGATGAAACGCAACAGATGATAACAGCTGATGATAATGTGTGGAATAATTATATCAAGGCCCAACCTGAAATGCAACCGTACAGAACAAAAGTCATTTCGCATTATAACGAGCTGTGCATAATATGTGGCCATGCAGTTGCTGATGGAAGATACAGTCTTTCATGTTATGATGTGGACTTTGAGAACGAAGCAAGAGGAATGGAATTTCAAGATCCCACTGATGCTGATCCTAAAAAAATTGACTGGTCACAGATTATGGACCAATTTTTCATTGAACTAATGTTGGATGAGGTGTGCAAAGGGAATAAGGTTGGTTGCACTTTCAAGAAGAAATCATGGATTACCATGATCACATGCTTTAATGAGAAATTTGGGTTTCACCATGGTAGGGCTGTATTGAAAAATCGGTACAATGTCCTCAGGAAACATTACAGTAGCGTTAACGCCCTGCTTGATCAAAAGGGTTTTACTTGGGATGAAACACAACAAAAGGTGGTAGCTGATGATCCGGTTTGGAACAAATATATAGAGGCACATCCCAGTTTCCACATGTACAGAAATAAAGCTATGCCATATTATTCCGATTTGTGTGTCATATGCGGAAATGAGGCTAGACTTTTGAAAAATGGTCCATCAAGCTGCAATCGAGCTCTTGACAAGGGAACCGTTGCTAAGAAAATTGACGGAGATGCTACACCTATTGTTGACAAACAAAATGTTCAGAAAAAAGCATTGGGTTCAAGTGATGTCAAGAATTTATCAGATCAAAAGGAAAGGCACAGTCATGAAGTCACACAAACCTTACAACAGTCTAAGAAACCACAAAGAACCGATGGAGTTGCAGCCAAAGCTCTAGGAGATATGGCAGTTGCAGAGTTACCGTTGAAGAAGAAACTGAAGAAAGAGGCATCTGTATCCATAGAGAAAGTTATTGATGTCTTAAAGGCTATACCAGACATTGACGATGATTTACTACTGGATGCCATTGACCTTTTGGAGGATGAGAAGAGAGCCAGGATGTTTTTAGCATTGCACCCCGCTCTGCGAAAGAAGTGGTTGATGAGAAAGCTACGTCCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

463

Amino Acids

53.16

Weight (kDa)

8.75

Isoelectric Point (pI)

32.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 1346
AciI CCGC 2 cut(s) 906, 1344
AclWI GGATC 3 cut(s) 512, 527, 806
AcoI YGGCCR 1 cut(s) 433
AcsI RAATTY 3 cut(s) 509, 674, 1060
AcuI CTGAAG 1 cut(s) 1223
AfaI GTAC 4 cut(s) 263, 386, 716, 860
AfiI CCNNNNNNNGG 4 cut(s) 30, 157, 694, 1303
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 7 cut(s) 515, 581, 631, 706, 928, 1047, 1192
AjnI CCWGG 2 cut(s) 50, 1319
AjuI GAANNNNNNNTTGG 2 cut(s) 1022, 1054
AluBI AGCT 9 cut(s) 85, 332, 418, 806, 872, 945, 956, 1157, 1375
AluI AGCT 9 cut(s) 85, 332, 418, 806, 872, 945, 956, 1157, 1375
Alw21I GWGCWC 1 cut(s) 958
AlwI GGATC 3 cut(s) 512, 527, 806
AlwNI CAGNNNCTG 1 cut(s) 446
AoxI GGCC 2 cut(s) 363, 433
ApeKI GCWGC 2 cut(s) 945, 1148
ApoI RAATTY 3 cut(s) 509, 674, 1060
AspS9I GGNCC 3 cut(s) 364, 565, 935
AsuHPI GGTGA 1 cut(s) 677
AvaII GGWCC 2 cut(s) 565, 935
AxyI CCTNAGG 1 cut(s) 725
BalI TGGCCA 1 cut(s) 435
BanII GRGCYC 1 cut(s) 958
Bbv12I GWGCWC 1 cut(s) 958
BbvI GCAGC 2 cut(s) 932, 1160
BccI CCATC 5 cut(s) 181, 297, 443, 946, 1133
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 2 cut(s) 52, 1321
BciVI GTATCC 1 cut(s) 1231
BclI TGATCA 3 cut(s) 286, 654, 760
BfaI CTAG 3 cut(s) 206, 918, 1160
BfuI GTATCC 1 cut(s) 1231
BisI GCNGC 2 cut(s) 946, 1149
BlsI GCNGC 2 cut(s) 947, 1150
Bme1390I CCNGG 2 cut(s) 52, 1321
Bme18I GGWCC 2 cut(s) 565, 935
BmgT120I GGNCC 3 cut(s) 364, 565, 935
BmiI GGNNCC 1 cut(s) 970
BmrFI CCNGG 2 cut(s) 52, 1321
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 4 cut(s) 517, 985, 1223, 1276
BmuI ACTGGG 1 cut(s) 840
BplI GAGNNNNNCTC 2 cut(s) 22, 54
Bsa29I ATCGAT 1 cut(s) 238
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 50, 688
BsaWI WCCGGW 1 cut(s) 814
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 157, 694, 1303
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 5 cut(s) 144, 170, 554, 846, 1287
Bse21I CCTNAGG 1 cut(s) 725
Bse3DI GCAATG 1 cut(s) 1334
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 52, 1321
BseCI ATCGAT 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 50, 688
BseGI GGATG 8 cut(s) 10, 313, 598, 787, 841, 1291, 1312, 1329
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 4 cut(s) 30, 157, 694, 1303
BseMI GCAATG 1 cut(s) 1334
BseMII CTCAG 1 cut(s) 739
BseNI ACTGG 5 cut(s) 144, 170, 554, 846, 1287
BseXI GCAGC 2 cut(s) 932, 1160
BshFI GGCC 2 cut(s) 365, 435
BshVI ATCGAT 1 cut(s) 238
BsiHKAI GWGCWC 1 cut(s) 958
BsiSI CCGG 2 cut(s) 129, 815
BslI CCNNNNNNNGG 4 cut(s) 30, 157, 694, 1303
BsnI GGCC 2 cut(s) 365, 435
Bsp1286I GDGCHC 1 cut(s) 958
Bsp1407I TGTACA 1 cut(s) 858
Bsp143I GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
Bsp19I CCATGG 1 cut(s) 688
BspACI CCGC 2 cut(s) 906, 1344
BspANI GGCC 2 cut(s) 365, 435
BspCNI CTCAG 1 cut(s) 738
BspDI ATCGAT 1 cut(s) 238
BspHI TCATGA 1 cut(s) 1090
BspLI GGNNCC 1 cut(s) 970
BspPI GGATC 3 cut(s) 512, 527, 806
BsrBI CCGCTC 1 cut(s) 1346
BsrDI GCAATG 1 cut(s) 1334
BsrFI RCCGGY 1 cut(s) 128
BsrGI TGTACA 1 cut(s) 858
BsrI ACTGG 5 cut(s) 144, 170, 554, 846, 1287
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 2 cut(s) 50, 688
BssMI GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
BssT1I CCWWGG 1 cut(s) 688
Bst2UI CCWGG 2 cut(s) 52, 1321
Bst4CI ACNGT 9 cut(s) 185, 384, 461, 740, 973, 1088, 1116, 1188, 1386
Bst6I CTCTTC 2 cut(s) 269, 1307
BstAUI TGTACA 1 cut(s) 858
BstDEI CTNAG 3 cut(s) 725, 978, 1119
BstDSI CCRYGG 1 cut(s) 688
BstENI CCTNNNNNAGG 1 cut(s) 1301
BstF5I GGATG 8 cut(s) 10, 313, 598, 787, 841, 1291, 1312, 1329
BstKTI GATC 7 cut(s) 289, 520, 535, 657, 763, 814, 1072
BstMBI GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
BstMWI GCNNNNNNNGC 2 cut(s) 99, 1154
BstNI CCWGG 2 cut(s) 52, 1321
BstNSI RCATGY 2 cut(s) 663, 859
BstSCI CCNGG 2 cut(s) 50, 1319
BstV1I GCAGC 2 cut(s) 932, 1160
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu15I ATCGAT 1 cut(s) 238
Bsu36I CCTNAGG 1 cut(s) 725
BsuI GTATCC 1 cut(s) 1231
BsuRI GGCC 2 cut(s) 365, 435
BsuTUI ATCGAT 1 cut(s) 238
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 8 cut(s) 10, 313, 598, 787, 841, 1291, 1312, 1329
BtsIMutI CAGTG 2 cut(s) 151, 522
CaiI CAGNNNCTG 1 cut(s) 446
CciI TCATGA 1 cut(s) 1090
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 3 cut(s) 364, 565, 935
ClaI ATCGAT 1 cut(s) 238
Csp6I GTAC 4 cut(s) 262, 385, 715, 859
CviAII CATG 9 cut(s) 152, 437, 468, 642, 652, 660, 689, 856, 1091
CviQI GTAC 4 cut(s) 262, 385, 715, 859
DdeI CTNAG 3 cut(s) 725, 978, 1119
DpnI GATC 7 cut(s) 288, 519, 534, 656, 762, 813, 1071
DpnII GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
EaeI YGGCCR 1 cut(s) 433
Eam1104I CTCTTC 2 cut(s) 269, 1307
EarI CTCTTC 2 cut(s) 269, 1307
Ecl136II GAGCTC 1 cut(s) 956
Eco130I CCWWGG 1 cut(s) 688
Eco24I GRGCYC 1 cut(s) 958
Eco47I GGWCC 2 cut(s) 565, 935
Eco53kI GAGCTC 1 cut(s) 956
Eco57I CTGAAG 1 cut(s) 1223
Eco81I CCTNAGG 1 cut(s) 725
EcoICRI GAGCTC 1 cut(s) 956
EcoNI CCTNNNNNAGG 1 cut(s) 1301
EcoRII CCWGG 2 cut(s) 50, 1319
EcoT14I CCWWGG 1 cut(s) 688
EcoT38I GRGCYC 1 cut(s) 958
ErhI CCWWGG 1 cut(s) 688
FaeI CATG 9 cut(s) 155, 440, 471, 645, 655, 663, 692, 859, 1094
FatI CATG 9 cut(s) 151, 436, 467, 641, 651, 659, 688, 855, 1090
FauI CCCGC 1 cut(s) 1351
FauNDI CATATG 1 cut(s) 902
FbaI TGATCA 3 cut(s) 286, 654, 760
Fnu4HI GCNGC 2 cut(s) 946, 1149
FokI GGATG 8 cut(s) 17, 320, 605, 794, 828, 1298, 1319, 1336
FriOI GRGCYC 1 cut(s) 958
Fsp4HI GCNGC 2 cut(s) 946, 1149
FspBI CTAG 3 cut(s) 206, 918, 1160
GluI GCNGC 2 cut(s) 946, 1149
HaeIII GGCC 2 cut(s) 365, 435
HapII CCGG 2 cut(s) 129, 815
Hin1II CATG 9 cut(s) 155, 440, 471, 645, 655, 663, 692, 859, 1094
HincII GTYRAC 2 cut(s) 748, 1012
HindII GTYRAC 2 cut(s) 748, 1012
HinfI GANTC 2 cut(s) 169, 277
HpaI GTTAAC 1 cut(s) 748
HpaII CCGG 2 cut(s) 129, 815
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 4 cut(s) 481, 748, 1012, 1382
Hpy188I TCNGA 4 cut(s) 231, 889, 1029, 1069
Hpy188III TCNNGA 6 cut(s) 515, 631, 727, 959, 1057, 1091
Hpy8I GTNNAC 4 cut(s) 481, 748, 1012, 1382
HpyCH4III ACNGT 9 cut(s) 185, 384, 461, 740, 973, 1088, 1116, 1188, 1386
HpyCH4IV ACGT 1 cut(s) 1378
HpyCH4V TGCA 9 cut(s) 379, 423, 440, 603, 624, 948, 1148, 1178, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 99, 1154
HpyF3I CTNAG 3 cut(s) 725, 978, 1119
HpySE526I ACGT 1 cut(s) 1378
Hsp92II CATG 9 cut(s) 155, 440, 471, 645, 655, 663, 692, 859, 1094
Ksp22I TGATCA 3 cut(s) 286, 654, 760
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
Lsp1109I GCAGC 2 cut(s) 932, 1160
LweI GCATC 4 cut(s) 517, 985, 1223, 1276
MaeI CTAG 3 cut(s) 206, 918, 1160
MaeII ACGT 1 cut(s) 1378
MaeIII GTNAC 5 cut(s) 104, 146, 552, 1096, 1182
MalI GATC 7 cut(s) 288, 519, 534, 656, 762, 813, 1071
MbiI CCGCTC 1 cut(s) 1346
MboI GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
MboII GAAGA 9 cut(s) 126, 181, 286, 465, 646, 1204, 1207, 1216, 1324
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 958
MlsI TGGCCA 1 cut(s) 435
MluCI AATT 7 cut(s) 352, 509, 543, 569, 674, 984, 1060
MluNI TGGCCA 1 cut(s) 435
MlyI GAGTC 2 cut(s) 163, 286
MmeI TCCRAC 1 cut(s) 570
MnlI CCTC 9 cut(s) 24, 246, 494, 589, 734, 829, 907, 1204, 1297
Mox20I TGGCCA 1 cut(s) 435
MscI TGGCCA 1 cut(s) 435
MseI TTAA 4 cut(s) 116, 666, 747, 1247
MslI CAYNNNNRTG 1 cut(s) 1089
Msp20I TGGCCA 1 cut(s) 435
MspA1I CMGCKG 1 cut(s) 332
MspI CCGG 2 cut(s) 129, 815
MspR9I CCNGG 2 cut(s) 52, 1321
MvaI CCWGG 2 cut(s) 52, 1321
MwoI GCNNNNNNNGC 2 cut(s) 99, 1154
NcoI CCATGG 1 cut(s) 688
NdeI CATATG 1 cut(s) 902
NdeII GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
NlaIII CATG 9 cut(s) 155, 440, 471, 645, 655, 663, 692, 859, 1094
NlaIV GGNNCC 1 cut(s) 970
NmuCI GTSAC 4 cut(s) 104, 146, 552, 1096
NspI RCATGY 2 cut(s) 663, 859
PagI TCATGA 1 cut(s) 1090
PciI ACATGT 1 cut(s) 855
PkrI GCNGC 2 cut(s) 947, 1150
PleI GAGTC 2 cut(s) 163, 285
PpsI GAGTC 2 cut(s) 163, 285
PscI ACATGT 1 cut(s) 855
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 958
Psp6I CCWGG 2 cut(s) 50, 1319
PspGI CCWGG 2 cut(s) 50, 1319
PspN4I GGNNCC 1 cut(s) 970
PspPI GGNCC 3 cut(s) 364, 565, 935
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 332
RsaI GTAC 4 cut(s) 263, 386, 716, 860
RsaNI GTAC 4 cut(s) 262, 385, 715, 859
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 1 cut(s) 958
SaqAI TTAA 4 cut(s) 116, 666, 747, 1247
SatI GCNGC 2 cut(s) 946, 1149
Sau3AI GATC 7 cut(s) 286, 517, 532, 654, 760, 811, 1069
Sau96I GGNCC 3 cut(s) 364, 565, 935
SchI GAGTC 2 cut(s) 163, 286
ScrFI CCNGG 2 cut(s) 52, 1321
SduI GDGCHC 1 cut(s) 958
SfaNI GCATC 4 cut(s) 517, 985, 1223, 1276
SinI GGWCC 2 cut(s) 565, 935
SmiMI CAYNNNNRTG 1 cut(s) 1089
Sse9I AATT 7 cut(s) 352, 509, 543, 569, 674, 984, 1060
SsiI CCGC 2 cut(s) 906, 1344
SspMI CTAG 3 cut(s) 206, 918, 1160
SstI GAGCTC 1 cut(s) 958
StyD4I CCNGG 2 cut(s) 50, 1319
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 9 cut(s) 185, 384, 461, 740, 973, 1088, 1116, 1188, 1386
TaiI ACGT 1 cut(s) 1381
TaqI TCGA 2 cut(s) 238, 952
TasI AATT 7 cut(s) 352, 509, 543, 569, 674, 984, 1060
TatI WGTACW 2 cut(s) 261, 858
Tru1I TTAA 4 cut(s) 116, 666, 747, 1247
Tru9I TTAA 4 cut(s) 116, 666, 747, 1247
TscAI CASTG 2 cut(s) 151, 529
TseFI GTSAC 4 cut(s) 104, 146, 552, 1096
TseI GCWGC 2 cut(s) 945, 1148
Tsp45I GTSAC 4 cut(s) 104, 146, 552, 1096
TspDTI ATGAA 8 cut(s) 21, 181, 287, 324, 456, 565, 798, 1107
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 2 cut(s) 151, 529
VpaK11BI GGWCC 2 cut(s) 565, 935
XagI CCTNNNNNAGG 1 cut(s) 1301
XapI RAATTY 3 cut(s) 509, 674, 1060
XceI RCATGY 2 cut(s) 663, 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 1297
XspI CTAG 3 cut(s) 206, 918, 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.