pycom12g03760
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002174
Physical Location & Seq
Reverse (-)
3663818 .. 3664740
923 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g03760.4

Sequence Viewer

Length: 663 bp
ATGTGTGAGAAAGAAAGATGTGATCCTAAAAAAATTGACTGGTCACAGACTATGGACCAATTCTTCCTTGAACTAATGTTGGATGAAGTGCACAAAGGGAATAAGGTTGGTCGCACTTTCAAGAAGAAATCATGGATTACCATGATCACATGCTGTAATGAGAAATTCGGGTTTCAGGTGGTATTGAAAAATCGGTACAATGTGTTCAGGAAACATTACAGTAGCGTTAACATTCTGCTTGATGAAAAGGGTTTTACTTGGGACGAAACACAACAGAAGGTGGTGGCTGATGATCCTGTCTGGAACAAGTATGTCGAGATTTTTGAAAAAGTTCCATCAAGCTGCAATCGAGCTCTTTACAAGGGAACCATTGCCAAGAAAATTGACGGAGATGCTCAGAAGAAGTCAGTGGGCTCAAGTGACGTCAAGAATTTTTCAGATCAAAAGGAAAGGCACCGTCCTGTAAGCACACAAACCTTACAACTGTCTAAGAAACCACTAAGTACGGATGGAGTTGCGGCCAATGCTCTAGGAGATATGGCAGTTGCAGAGTCACCGTTGAAGAAACTGAAGAAAGAGGATGAGAAGAGAGCCAGGATATTTTTAGCATTGCACCCCGCTCTGCGAAAGAAGTGGTTGATGAGAAAGCTTCGTCCACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

221

Amino Acids

25.5

Weight (kDa)

9.64

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 453
AccBSI CCGCTC 1 cut(s) 620
AciI CCGC 2 cut(s) 518, 618
AclWI GGATC 2 cut(s) 17, 287
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 2 cut(s) 164, 430
AcuI CTGAAG 1 cut(s) 590
AcyI GRCGYC 1 cut(s) 423
AfaI GTAC 2 cut(s) 197, 505
AgsI TTSAA 5 cut(s) 71, 121, 187, 326, 562
AjnI CCWGG 1 cut(s) 593
AluBI AGCT 3 cut(s) 342, 353, 649
AluI AGCT 3 cut(s) 342, 353, 649
Alw21I GWGCWC 2 cut(s) 93, 355
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 2 cut(s) 17, 287
AoxI GGCC 1 cut(s) 519
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 2 cut(s) 164, 430
Asp700I GAANNNNTTC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 546
AvaII GGWCC 1 cut(s) 55
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 453
BanII GRGCYC 2 cut(s) 355, 416
Bbv12I GWGCWC 2 cut(s) 93, 355
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 343, 503
BciT130I CCWGG 1 cut(s) 595
BclI TGATCA 1 cut(s) 144
BfaI CTAG 1 cut(s) 530
BisI GCNGC 2 cut(s) 343, 519
BlsI GCNGC 2 cut(s) 344, 520
Bme1390I CCNGG 1 cut(s) 595
Bme18I GGWCC 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 367, 455
BmrFI CCNGG 1 cut(s) 595
BmsI GCATC 1 cut(s) 382
BpuEI CTTGAG 1 cut(s) 400
BsaHI GRCGYC 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 2 cut(s) 369, 608
BseBI CCWGG 1 cut(s) 595
BseGI GGATG 3 cut(s) 88, 514, 586
BseMI GCAATG 2 cut(s) 369, 608
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 44
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 1 cut(s) 329
BshFI GGCC 1 cut(s) 521
BshNI GGYRCC 1 cut(s) 453
BsiHKAI GWGCWC 2 cut(s) 93, 355
BslFI GGGAC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 275
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 3 cut(s) 93, 355, 416
Bsp143I GATC 4 cut(s) 22, 144, 292, 439
BspACI CCGC 2 cut(s) 518, 618
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 367, 455
BspPI GGATC 2 cut(s) 17, 287
BspT107I GGYRCC 1 cut(s) 453
BsrBI CCGCTC 1 cut(s) 620
BsrDI GCAATG 2 cut(s) 369, 608
BsrI ACTGG 1 cut(s) 44
BssMI GATC 4 cut(s) 22, 144, 292, 439
BssNI GRCGYC 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 595
Bst4CI ACNGT 5 cut(s) 221, 458, 486, 558, 660
Bst6I CTCTTC 1 cut(s) 581
BstACI GRCGYC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 396, 489, 500
BstF5I GGATG 3 cut(s) 88, 514, 586
BstKTI GATC 4 cut(s) 25, 147, 295, 442
BstMBI GATC 4 cut(s) 22, 144, 292, 439
BstMWI GCNNNNNNNGC 1 cut(s) 524
BstNI CCWGG 1 cut(s) 595
BstNSI RCATGY 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 593
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 3 cut(s) 88, 514, 586
BtsIMutI CAGTG 2 cut(s) 414, 656
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 196, 504
CviAII CATG 3 cut(s) 132, 142, 150
CviJI RGCY 7 cut(s) 287, 342, 353, 414, 521, 593, 649
CviKI_1 RGCY 7 cut(s) 287, 342, 353, 414, 521, 593, 649
CviQI GTAC 2 cut(s) 196, 504
DdeI CTNAG 3 cut(s) 396, 489, 500
DpnI GATC 4 cut(s) 24, 146, 294, 441
DpnII GATC 4 cut(s) 22, 144, 292, 439
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Ecl136II GAGCTC 1 cut(s) 353
Eco24I GRGCYC 2 cut(s) 355, 416
Eco47I GGWCC 1 cut(s) 55
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 590
EcoICRI GAGCTC 1 cut(s) 353
EcoRII CCWGG 1 cut(s) 593
EcoT38I GRGCYC 2 cut(s) 355, 416
FaeI CATG 3 cut(s) 135, 145, 153
FaiI YATR 6 cut(s) 53, 133, 143, 151, 312, 539
FaqI GGGAC 1 cut(s) 275
FatI CATG 3 cut(s) 131, 141, 149
FauI CCCGC 1 cut(s) 625
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 343, 519
FokI GGATG 3 cut(s) 95, 521, 593
FriOI GRGCYC 2 cut(s) 355, 416
Fsp4HI GCNGC 2 cut(s) 343, 519
FspBI CTAG 1 cut(s) 530
GluI GCNGC 2 cut(s) 343, 519
HaeIII GGCC 1 cut(s) 521
Hin1I GRCGYC 1 cut(s) 423
Hin1II CATG 3 cut(s) 135, 145, 153
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 1 cut(s) 551
HpaI GTTAAC 1 cut(s) 229
HphI GGTGA 1 cut(s) 546
Hpy166II GTNNAC 3 cut(s) 91, 229, 656
Hpy188I TCNGA 2 cut(s) 399, 439
Hpy188III TCNNGA 5 cut(s) 121, 208, 301, 316, 427
Hpy8I GTNNAC 3 cut(s) 91, 229, 656
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 5 cut(s) 221, 458, 486, 558, 660
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 4 cut(s) 91, 345, 548, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 524
HpyF3I CTNAG 3 cut(s) 396, 489, 500
HpySE526I ACGT 1 cut(s) 423
Hsp92I GRCGYC 1 cut(s) 423
Hsp92II CATG 3 cut(s) 135, 145, 153
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 229
Kzo9I GATC 4 cut(s) 22, 144, 292, 439
LpnPI CCDG 8 cut(s) 25, 161, 193, 286, 309, 474, 580, 607
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 530
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 42, 419, 552
MalI GATC 4 cut(s) 24, 146, 294, 441
MbiI CCGCTC 1 cut(s) 620
MboI GATC 4 cut(s) 22, 144, 292, 439
MboII GAAGA 6 cut(s) 55, 136, 412, 574, 583, 598
MhlI GDGCHC 3 cut(s) 93, 355, 416
MluCI AATT 5 cut(s) 33, 59, 164, 381, 430
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 595
MvaI CCWGG 1 cut(s) 595
MwoI GCNNNNNNNGC 1 cut(s) 524
NdeII GATC 4 cut(s) 22, 144, 292, 439
NlaIII CATG 3 cut(s) 135, 145, 153
NlaIV GGNNCC 2 cut(s) 367, 455
NmuCI GTSAC 3 cut(s) 42, 419, 552
NspI RCATGY 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 330
PkrI GCNGC 2 cut(s) 344, 520
PleI GAGTC 1 cut(s) 559
PpsI GAGTC 1 cut(s) 559
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 593
PspGI CCWGG 1 cut(s) 593
PspN4I GGNNCC 2 cut(s) 367, 455
PspPI GGNCC 1 cut(s) 55
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
RsaI GTAC 2 cut(s) 197, 505
RsaNI GTAC 2 cut(s) 196, 504
SacI GAGCTC 1 cut(s) 355
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 2 cut(s) 343, 519
Sau3AI GATC 4 cut(s) 22, 144, 292, 439
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 1 cut(s) 595
SduI GDGCHC 3 cut(s) 93, 355, 416
SetI ASST 8 cut(s) 108, 180, 282, 344, 355, 426, 479, 651
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 415
SmoI CTYRAG 1 cut(s) 415
Sse9I AATT 5 cut(s) 33, 59, 164, 381, 430
SsiI CCGC 2 cut(s) 518, 618
SspMI CTAG 1 cut(s) 530
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 593
TaaI ACNGT 5 cut(s) 221, 458, 486, 558, 660
TaiI ACGT 1 cut(s) 426
TaqI TCGA 2 cut(s) 315, 349
TasI AATT 5 cut(s) 33, 59, 164, 381, 430
TauI GCSGC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 2 cut(s) 414, 663
TseFI GTSAC 3 cut(s) 42, 419, 552
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 3 cut(s) 42, 419, 552
TspDTI ATGAA 2 cut(s) 99, 258
TspGWI ACGGA 2 cut(s) 402, 521
TspRI CASTG 2 cut(s) 414, 663
VneI GTGCAC 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 2 cut(s) 164, 430
XceI RCATGY 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 330
XspI CTAG 1 cut(s) 530
ZraI GACGTC 1 cut(s) 424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.