Prupe.4G276100_v2.0.a1
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0002174
Physical Location & Seq
Forward (+)
23076568 .. 23077315
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G276100.1

Sequence Viewer

Length: 315 bp
ATGGAAGATCAAGTTGTTTCGGTAGGAACATGGAGAAAATGGGGATCAATATCCACCTCAGCTAGTAAAAGAGCTCAAAGAATCATCAAAGAAGAGATACAAGAACCCTTGGATGAGAAACCACATATAGTAAAAGGGTTGGTTGGCGATGAAGACGACAAAGACTGCTGCTCACTTGAAACTGTACCTGGCATGGCTGACGAGCTCTTCTTGGAAGCTTCTCTAATTCTAGAAGATGATAAGAAAGCCAAGATGTTTGTGGCAATGGATGTTGCAGCTCGAAAGAAGTGGCTATGCAGAAAACTTCCCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

105

Amino Acids

11.76

Weight (kDa)

5.21

Isoelectric Point (pI)

32.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 52
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 179
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 5 cut(s) 62, 74, 205, 218, 278
AluI AGCT 5 cut(s) 62, 74, 205, 218, 278
Alw21I GWGCWC 2 cut(s) 76, 207
AlwI GGATC 1 cut(s) 52
ApeKI GCWGC 2 cut(s) 168, 275
BanII GRGCYC 2 cut(s) 76, 207
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 2 cut(s) 76, 207
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 155, 287
BciT130I CCWGG 1 cut(s) 189
BfaI CTAG 2 cut(s) 63, 230
BisI GCNGC 2 cut(s) 169, 276
BlsI GCNGC 2 cut(s) 170, 277
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
BpiI GAAGAC 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 310
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 49
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 2 cut(s) 118, 274
BseJI GATNNNNATC 1 cut(s) 49
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 155, 287
BsiHKAI GWGCWC 2 cut(s) 76, 207
Bsp1286I GDGCHC 2 cut(s) 76, 207
Bsp143I GATC 2 cut(s) 7, 44
BspCNI CTCAG 1 cut(s) 71
BspPI GGATC 1 cut(s) 52
BspQI GCTCTTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 2 cut(s) 7, 44
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 2 cut(s) 87, 212
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 118, 274
BstKTI GATC 2 cut(s) 10, 47
BstMBI GATC 2 cut(s) 7, 44
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 155, 287
BstV2I GAAGAC 1 cut(s) 159
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 118, 274
Csp6I GTAC 1 cut(s) 185
CviAII CATG 2 cut(s) 30, 193
CviJI RGCY 8 cut(s) 62, 74, 197, 205, 218, 248, 278, 292
CviKI_1 RGCY 8 cut(s) 62, 74, 197, 205, 218, 248, 278, 292
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 58
DpnI GATC 2 cut(s) 9, 46
DpnII GATC 2 cut(s) 7, 44
Eam1104I CTCTTC 2 cut(s) 87, 212
EarI CTCTTC 2 cut(s) 87, 212
Ecl136II GAGCTC 2 cut(s) 74, 205
Eco130I CCWWGG 1 cut(s) 108
Eco24I GRGCYC 2 cut(s) 76, 207
Eco53kI GAGCTC 2 cut(s) 74, 205
EcoICRI GAGCTC 2 cut(s) 74, 205
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 76, 207
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 33, 196
FaiI YATR 5 cut(s) 31, 126, 128, 194, 295
FatI CATG 2 cut(s) 29, 192
Fnu4HI GCNGC 2 cut(s) 169, 276
FokI GGATG 2 cut(s) 125, 281
FriOI GRGCYC 2 cut(s) 76, 207
Fsp4HI GCNGC 2 cut(s) 169, 276
FspBI CTAG 2 cut(s) 63, 230
GluI GCNGC 2 cut(s) 169, 276
Hin1II CATG 2 cut(s) 33, 196
HindIII AAGCTT 1 cut(s) 216
HinfI GANTC 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 2 cut(s) 275, 297
HpyF3I CTNAG 1 cut(s) 58
Hsp92II CATG 2 cut(s) 33, 196
Kzo9I GATC 2 cut(s) 7, 44
LguI GCTCTTC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 174, 201
Lsp1109I GCAGC 2 cut(s) 155, 287
MaeI CTAG 2 cut(s) 63, 230
MalI GATC 2 cut(s) 9, 46
MboI GATC 2 cut(s) 7, 44
MboII GAAGA 5 cut(s) 17, 104, 164, 199, 245
MhlI GDGCHC 2 cut(s) 76, 207
MluCI AATT 1 cut(s) 225
MnlI CCTC 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
NdeII GATC 2 cut(s) 7, 44
NlaIII CATG 2 cut(s) 33, 196
PciSI GCTCTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 170, 277
Psp124BI GAGCTC 2 cut(s) 76, 207
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SacI GAGCTC 2 cut(s) 76, 207
SapI GCTCTTC 1 cut(s) 212
SatI GCNGC 2 cut(s) 169, 276
Sau3AI GATC 2 cut(s) 7, 44
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 2 cut(s) 76, 207
SetI ASST 7 cut(s) 59, 64, 76, 190, 207, 220, 280
Sse9I AATT 1 cut(s) 225
SspMI CTAG 2 cut(s) 63, 230
SstI GAGCTC 2 cut(s) 76, 207
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 280
TasI AATT 1 cut(s) 225
TfiI GAWTC 1 cut(s) 81
TseI GCWGC 2 cut(s) 168, 275
TspDTI ATGAA 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XspI CTAG 2 cut(s) 63, 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.