Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0013729

Physical Location & Seq

Genomic Coordinates Forward (+)

5780217 .. 5781832

Gene Structure 1616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1051000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACTGCCATGGTTGGATGCATCGCTTCTGTTCAAAGACCACAACTCTTCCAGCACCTTATCCTACTAAGTGGCTCTCCCAGGTACCTCAACACCACAGCATACACCGGAGGCTTCACCAGACCACAACTGGATGCGCTCTTCAACGAAATAGGGAACAACTTCACAAGTTGGGTTCCAAGTTTTGCCCCAACACCAATAGGTGTAAACGACACACGTGCGATCACCGAGTTCGAAAACAGTTTGGGAAGAATGAGCCCTAGGATTGCTGTAAGGGTAGCTAGAGTTGTGTTTCTGAGCGACCTCAGAAGAATTCTGCCACAAATTATTGTTCCTAGTAGCATAATCCAGTCCAGAAAAGATTTTATCGTTCCGAAATCGGTTGCATTTTACATGAAGAAGAAGCTTGGTGGTCCTGCAAAAGTCAAGATCATAAACACAGAAGGCCATTTTCCTCAGTTGACAGCTTACCTTCTGCTCTTAAAAGTTCTCAAAAAACTTGTTCACATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

172

Amino Acids

19.08

Weight (kDa)

10.54

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013729)

Species	Orthologous Gene IDs
malus_domestica	MD12G1051000.v1.1 MD14G1049700.v1.1
prunus_persica	Prupe.7G085800_v2.0.a1
pyrus_communis	pycom12g04530 pycom12g04540 pycom14g04110
rosa_chinensis	RchiOBHm_Chr3g0478651
rosa_laevigata	RLG00000023637
rosa_multiflora	Rmu_co8105518.1_g000001 Rmu_sc0002454.1_g000001 Rmu_sc0005420.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403240
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218900 Rh3BG250600 Rh3CG247400 Rh3DG243700
rosa_wichuraiana	Rw3G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	312
AcvI	CACGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	35, 145
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	281, 406, 467
AluI	AGCT	3 cut(s)	281, 406, 467
AoxI	GGCC	1 cut(s)	445
ApoI	RAATTY	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	84
AspA2I	CCTAGG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	109, 217
AsuII	TTCGAA	1 cut(s)	234
AvaII	GGWCC	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	1 cut(s)	260
BbrPI	CACGTG	1 cut(s)	218
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciT130I	CCWGG	1 cut(s)	82
BfaI	CTAG	3 cut(s)	261, 282, 336
BlnI	CCTAGG	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	2 cut(s)	86, 177
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	3 cut(s)	8, 30, 124
Bpu14I	TTCGAA	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	9, 80, 260
BsaWI	WCCGGW	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	135, 349
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	3 cut(s)	9, 80, 260
BseGI	GGATG	2 cut(s)	23, 139
BseMII	CTCAG	3 cut(s)	287, 319, 470
BseNI	ACTGG	2 cut(s)	135, 349
BshFI	GGCC	1 cut(s)	447
BshNI	GGYRCC	1 cut(s)	84
BsiSI	CCGG	1 cut(s)	108
BsnI	GGCC	1 cut(s)	447
Bsp119I	TTCGAA	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	2 cut(s)	222, 429
Bsp19I	CCATGG	1 cut(s)	9
BspANI	GGCC	1 cut(s)	447
BspCNI	CTCAG	3 cut(s)	288, 318, 469
BspLI	GGNNCC	2 cut(s)	86, 177
BspQI	GCTCTTC	1 cut(s)	146
BspT104I	TTCGAA	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	84
BsrI	ACTGG	2 cut(s)	135, 349
BssECI	CCNNGG	3 cut(s)	9, 80, 260
BssMI	GATC	2 cut(s)	222, 429
BssT1I	CCWWGG	2 cut(s)	9, 260
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	53, 146
BstBAI	YACGTR	1 cut(s)	218
BstBI	TTCGAA	1 cut(s)	234
BstDEI	CTNAG	4 cut(s)	68, 296, 305, 456
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	23, 139
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	2 cut(s)	225, 432
BstMBI	GATC	2 cut(s)	222, 429
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	447
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	23, 139
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	2 cut(s)	10, 394
CviJI	RGCY	7 cut(s)	75, 114, 258, 281, 406, 447, 467
CviKI_1	RGCY	7 cut(s)	75, 114, 258, 281, 406, 447, 467
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	4 cut(s)	68, 296, 305, 456
DpnI	GATC	2 cut(s)	224, 431
DpnII	GATC	2 cut(s)	222, 429
Eam1104I	CTCTTC	2 cut(s)	53, 146
EarI	CTCTTC	2 cut(s)	53, 146
Eco130I	CCWWGG	2 cut(s)	9, 260
Eco24I	GRGCYC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	413
Eco72I	CACGTG	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	80
EcoT14I	CCWWGG	2 cut(s)	9, 260
EcoT22I	ATGCAT	1 cut(s)	23
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	9, 260
FaeI	CATG	2 cut(s)	13, 397
FaiI	YATR	5 cut(s)	11, 103, 344, 395, 434
FatI	CATG	2 cut(s)	9, 393
FokI	GGATG	2 cut(s)	30, 146
FriOI	GRGCYC	1 cut(s)	260
FspBI	CTAG	3 cut(s)	261, 282, 336
GlaI	GCGC	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	447
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	13, 397
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HindIII	AAGCTT	1 cut(s)	404
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	2 cut(s)	109, 217
Hpy166II	GTNNAC	3 cut(s)	208, 462, 505
Hpy188I	TCNGA	3 cut(s)	297, 308, 375
Hpy188III	TCNNGA	2 cut(s)	354, 427
Hpy8I	GTNNAC	3 cut(s)	208, 462, 505
HpyAV	CCTTC	2 cut(s)	437, 482
HpyCH4III	ACNGT	1 cut(s)	242
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	21, 386, 419
HpyF3I	CTNAG	4 cut(s)	68, 296, 305, 456
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	13, 397
HspAI	GCGC	1 cut(s)	137
KpnI	GGTACC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	222, 429
LguI	GCTCTTC	1 cut(s)	146
LpnPI	CCDG	9 cut(s)	65, 67, 94, 116, 121, 133, 362, 367, 429
LweI	GCATC	3 cut(s)	8, 30, 124
MaeI	CTAG	3 cut(s)	261, 282, 336
MaeII	ACGT	1 cut(s)	217
MalI	GATC	2 cut(s)	224, 431
MboI	GATC	2 cut(s)	222, 429
MboII	GAAGA	6 cut(s)	40, 133, 261, 321, 409, 412
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	2 cut(s)	312, 324
MnlI	CCTC	4 cut(s)	98, 104, 314, 465
Mph1103I	ATGCAT	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	482
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	222, 429
NlaIII	CATG	2 cut(s)	13, 397
NlaIV	GGNNCC	2 cut(s)	86, 177
NsiI	ATGCAT	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	161
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	80
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	2 cut(s)	86, 177
PspPI	GGNCC	1 cut(s)	413
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	482
Sau3AI	GATC	2 cut(s)	222, 429
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	3 cut(s)	8, 30, 124
SfuI	TTCGAA	1 cut(s)	234
SinI	GGWCC	1 cut(s)	413
Sse9I	AATT	2 cut(s)	312, 324
SspMI	CTAG	3 cut(s)	261, 282, 336
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	2 cut(s)	9, 260
TaaI	ACNGT	1 cut(s)	242
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	312, 324
Tru1I	TTAA	1 cut(s)	482
Tru9I	TTAA	1 cut(s)	482
TspDTI	ATGAA	1 cut(s)	410
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmaJI	CCTAGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	161
XspI	CTAG	3 cut(s)	261, 282, 336
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.