Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0013729

Physical Location & Seq

Genomic Coordinates Forward (+)

3516141 .. 3519506

Gene Structure 3366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g04110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAAGCCTTATGTCAAGGAGGAGGGATTGTCCAAGCCCTAAATACTCATGTGTACGGAAATGGAACTCAATCGTTGGTTCTTGCTCATGGGTTTGGTTCAGACCATACAGTTTGGCATTTCCTCATCCCCTTTCTTGCATGCTACTTCAAGGTTGTGGTTTTTGACTGGGTTTACTCTCCAAATGTTGATCCCAAACTCTATGATCCCAAAAGGTATTCCAACTTCAGTGCTTATGCAGACGACCTAGTCTGCCTTCTTAATCATCTCAATGTCGGTAGGACTGTATATATGGGTCACTCCATGGCTGCCATGGTTGGATGCATCGGTTCTATTCAAAGACCACACCTCTTCCAGCACCTTATCCTGCCAAGTGGCTCTCCCAGGTACCTCAACACCACAGGATACAACGGAGGCCTCACCAGACCACAACTGGATGCACTCTTCAACCAAATAGAAAACAATTTCACAAATTGGGTTTCAAGTTCTGCAACAACAGCAATAGGTGTAAACGACACAAGTGCGATCACTGAGTTCGAAAACAGTTTGGGAAGAATGAAGCCCAGTATTGCTGTCAGTGTAGCTAGAGTTGCGTTTCTAAGTGACTACAGAGGACTTCTGCCTCAAGTCATTGTTCCTAGTAGCATAATGCAGTCCAGGAAAGATTTTATCATTCCGAAATCAGTTGCATTTTACATGAAGAAACAGTTTCGTGGTCCTGCAAAAGTCAAGATCCTAAGCACAGAAGGCCATATTCCTCAGTTGACAGCTTACTCTTTGCTCTTGAAAGTTCTCAAAAAACTACTTCACATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

273

Amino Acids

30.14

Weight (kDa)

9.39

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 256	3.4e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	26 - 255	5.6e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013729)

Species	Orthologous Gene IDs
malus_domestica	MD12G1051000.v1.1 MD14G1049700.v1.1
prunus_persica	Prupe.7G085800_v2.0.a1
pyrus_communis	pycom12g04530 pycom12g04540 pycom14g04110
rosa_chinensis	RchiOBHm_Chr3g0478651
rosa_laevigata	RLG00000023637
rosa_multiflora	Rmu_co8105518.1_g000001 Rmu_sc0002454.1_g000001 Rmu_sc0005420.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403240
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218900 Rh3BG250600 Rh3CG247400 Rh3DG243700
rosa_wichuraiana	Rw3G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	387
AccB1I	GGYRCC	1 cut(s)	387
AclWI	GGATC	3 cut(s)	185, 200, 727
AcuI	CTGAAG	1 cut(s)	211
AfaI	GTAC	2 cut(s)	56, 389
AgsI	TTSAA	5 cut(s)	151, 338, 448, 483, 787
AjnI	CCWGG	2 cut(s)	383, 656
AluBI	AGCT	2 cut(s)	584, 770
AluI	AGCT	2 cut(s)	584, 770
AlwI	GGATC	3 cut(s)	185, 200, 727
AoxI	GGCC	2 cut(s)	415, 748
ApeKI	GCWGC	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	1 cut(s)	412
AsuII	TTCGAA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	716
BanI	GGYRCC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BbvI	GCAGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	503, 537
BciT130I	CCWGG	2 cut(s)	385, 658
BciVI	GTATCC	1 cut(s)	398
BfaI	CTAG	3 cut(s)	248, 585, 639
BfmI	CTRYAG	1 cut(s)	607
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	385, 658
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	2 cut(s)	385, 658
BmrI	ACTGGG	2 cut(s)	178, 558
BmsI	GCATC	3 cut(s)	311, 333, 427
BmuI	ACTGGG	2 cut(s)	178, 558
Bpu10I	CCTNAGC	1 cut(s)	737
Bpu14I	TTCGAA	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	609
BsaJI	CCNNGG	3 cut(s)	303, 312, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	3 cut(s)	173, 438, 564
BseBI	CCWGG	2 cut(s)	385, 658
BseDI	CCNNGG	3 cut(s)	303, 312, 383
BseGI	GGATG	3 cut(s)	126, 326, 442
BseMII	CTCAG	2 cut(s)	522, 773
BseNI	ACTGG	3 cut(s)	173, 438, 564
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	2 cut(s)	417, 750
BshNI	GGYRCC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	417, 750
Bsp119I	TTCGAA	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	190, 205, 525, 732
Bsp19I	CCATGG	2 cut(s)	303, 312
BspANI	GGCC	2 cut(s)	417, 750
BspCNI	CTCAG	2 cut(s)	523, 772
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	3 cut(s)	185, 200, 727
BspT104I	TTCGAA	1 cut(s)	537
BspT107I	GGYRCC	1 cut(s)	387
BsrI	ACTGG	3 cut(s)	173, 438, 564
BssECI	CCNNGG	3 cut(s)	303, 312, 383
BssMI	GATC	4 cut(s)	190, 205, 525, 732
BssT1I	CCWWGG	2 cut(s)	303, 312
Bst2UI	CCWGG	2 cut(s)	385, 658
Bst4CI	ACNGT	4 cut(s)	112, 286, 545, 708
Bst6I	CTCTTC	2 cut(s)	356, 449
BstBI	TTCGAA	1 cut(s)	537
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	4 cut(s)	531, 599, 737, 759
BstDSI	CCRYGG	2 cut(s)	303, 312
BstF5I	GGATG	3 cut(s)	126, 326, 442
BstKTI	GATC	4 cut(s)	193, 208, 528, 735
BstMBI	GATC	4 cut(s)	190, 205, 525, 732
BstMWI	GCNNNNNNNGC	3 cut(s)	497, 590, 747
BstNI	CCWGG	2 cut(s)	385, 658
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	383, 656
BstSFI	CTRYAG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	732
BstYI	RGATCY	1 cut(s)	732
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	417, 750
BtgI	CCRYGG	2 cut(s)	303, 312
BtsCI	GGATG	3 cut(s)	126, 326, 442
BtsIMutI	CAGTG	3 cut(s)	235, 528, 583
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	716
Csp6I	GTAC	2 cut(s)	55, 388
CviAII	CATG	6 cut(s)	50, 89, 141, 304, 313, 697
CviJI	RGCY	9 cut(s)	8, 38, 308, 378, 417, 562, 584, 750, 770
CviKI_1	RGCY	9 cut(s)	8, 38, 308, 378, 417, 562, 584, 750, 770
CviQI	GTAC	2 cut(s)	55, 388
DdeI	CTNAG	4 cut(s)	531, 599, 737, 759
DpnI	GATC	4 cut(s)	192, 207, 527, 734
DpnII	GATC	4 cut(s)	190, 205, 525, 732
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	2 cut(s)	356, 449
EarI	CTCTTC	2 cut(s)	356, 449
Eco130I	CCWWGG	2 cut(s)	303, 312
Eco147I	AGGCCT	1 cut(s)	417
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	383, 656
EcoT14I	CCWWGG	2 cut(s)	303, 312
EcoT22I	ATGCAT	1 cut(s)	326
ErhI	CCWWGG	2 cut(s)	303, 312
FaeI	CATG	6 cut(s)	53, 92, 144, 307, 316, 700
FatI	CATG	6 cut(s)	49, 88, 140, 303, 312, 696
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	3 cut(s)	113, 333, 449
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	3 cut(s)	248, 585, 639
GluI	GCNGC	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	417, 750
Hin1II	CATG	6 cut(s)	53, 92, 144, 307, 316, 700
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	4 cut(s)	55, 175, 511, 765
Hpy188I	TCNGA	2 cut(s)	103, 678
Hpy188III	TCNNGA	2 cut(s)	730, 784
Hpy8I	GTNNAC	4 cut(s)	55, 175, 511, 765
HpyAV	CCTTC	2 cut(s)	266, 740
HpyCH4III	ACNGT	4 cut(s)	112, 286, 545, 708
HpyCH4V	TGCA	8 cut(s)	140, 239, 324, 440, 491, 652, 689, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	497, 590, 747
HpyF3I	CTNAG	4 cut(s)	531, 599, 737, 759
Hsp92II	CATG	6 cut(s)	53, 92, 144, 307, 316, 700
KpnI	GGTACC	1 cut(s)	391
Kzo9I	GATC	4 cut(s)	190, 205, 525, 732
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	311, 333, 427
MaeI	CTAG	3 cut(s)	248, 585, 639
MaeIII	GTNAC	2 cut(s)	296, 602
MalI	GATC	4 cut(s)	192, 207, 527, 734
MboI	GATC	4 cut(s)	190, 205, 525, 732
MboII	GAAGA	4 cut(s)	343, 436, 564, 712
MflI	RGATCY	1 cut(s)	732
MluCI	AATT	2 cut(s)	463, 472
MmeI	TCCRAC	2 cut(s)	246, 298
Mph1103I	ATGCAT	1 cut(s)	326
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	385, 658
MvaI	CCWGG	2 cut(s)	385, 658
MwoI	GCNNNNNNNGC	3 cut(s)	497, 590, 747
NcoI	CCATGG	2 cut(s)	303, 312
NdeII	GATC	4 cut(s)	190, 205, 525, 732
NlaIII	CATG	6 cut(s)	53, 92, 144, 307, 316, 700
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	2 cut(s)	296, 602
NsiI	ATGCAT	1 cut(s)	326
NspI	RCATGY	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	537
PaeI	GCATGC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	417
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	383, 656
PspGI	CCWGG	2 cut(s)	383, 656
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	732
PsyI	GACNNNGTC	1 cut(s)	248
RsaI	GTAC	2 cut(s)	56, 389
RsaNI	GTAC	2 cut(s)	55, 388
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	4 cut(s)	190, 205, 525, 732
Sau96I	GGNCC	1 cut(s)	716
ScrFI	CCNGG	2 cut(s)	385, 658
SfaNI	GCATC	3 cut(s)	311, 333, 427
SfcI	CTRYAG	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	537
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	624
SmoI	CTYRAG	1 cut(s)	624
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	463, 472
SseBI	AGGCCT	1 cut(s)	417
SspMI	CTAG	3 cut(s)	248, 585, 639
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	383, 656
StyI	CCWWGG	2 cut(s)	303, 312
TaaI	ACNGT	4 cut(s)	112, 286, 545, 708
TaqI	TCGA	1 cut(s)	537
TasI	AATT	2 cut(s)	463, 472
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	235, 535, 583
TseFI	GTSAC	2 cut(s)	296, 602
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	2 cut(s)	296, 602
TspDTI	ATGAA	2 cut(s)	572, 713
TspGWI	ACGGA	2 cut(s)	72, 426
TspRI	CASTG	3 cut(s)	235, 535, 583
Tth111I	GACNNNGTC	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	716
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	310, 430
XspI	CTAG	3 cut(s)	248, 585, 639
Zsp2I	ATGCAT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.