Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013729

Physical Location & Seq

Genomic Coordinates Forward (+)

4785332 .. 4787314

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1049700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAAGCCTTATGTCAGGGAGGAGGGATTGTCCAAGCCCTAAACACTCATGTGTACGGAAATGGAACTCAGACGTTAGTTCTTGCTCATGGGTCTGGTTCAGACCGCACAGTTTGGCATTTCCTCATCCCCTTTCTTGCATGCTACTTCAAGGTTGTGGCTTTTAGGTACTCCAACTTCAGTGCTTATGCAGACGACCTAGTCTGCCTTCTTAATCATCTCAATGTCGGTAGGACTGTATATATGGGTCACTCCATGGCTGCCATGGTTGGATGCATCGCTTCTATTCAAAGACCACACCTCTTCCAGCACCTTATCCTGCTAAGTGGCTCTCCCAGGTACCTCAACACCACAGGATACAACGGAGGCCTCACCAGACCACAACTGGATGCACTCTTCAGTCAAATAGAAAACAATTTCACAAGTTGGGTTTCAAGTTCTGCACCAACAGCAATAGGTGTAAACGACACAAGTGCGATCACCGAGTTCGAAAACAGTTTGGGAAGAGTGAAGCCCAGGATTGCTGTCAATGTAGCTAGAGTTGTGTTTCTAAGTGACTACAGAAGACTTCTGCATCAAGTCATTGTTCCTTGTAGCATAATCCAGTCCAGGAAAGATTTTATCGTTCCGAAATCGGTTGCATTTTACATGAAGAAACAGCTTGGTGGTCCTGCAAAAGTCAAGATCCTAAACACAGAAGGCCATATTCCTCAGTTGACAGCTTACCCTTTGCTCTTGAAAGTTCTCAAAAAACAACTTCACATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

257

Amino Acids

28.27

Weight (kDa)

9.66

Isoelectric Point (pI)

30.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_6	PF12697	26 - 239	1.7e-09	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	58 - 140	1.4e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013729)

Species	Orthologous Gene IDs
malus_domestica	MD12G1051000.v1.1 MD14G1049700.v1.1
prunus_persica	Prupe.7G085800_v2.0.a1
pyrus_communis	pycom12g04530 pycom12g04540 pycom14g04110
rosa_chinensis	RchiOBHm_Chr3g0478651
rosa_laevigata	RLG00000023637
rosa_multiflora	Rmu_co8105518.1_g000001 Rmu_sc0002454.1_g000001 Rmu_sc0005420.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403240
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218900 Rh3BG250600 Rh3CG247400 Rh3DG243700
rosa_wichuraiana	Rw3G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AciI	CCGC	1 cut(s)	106
AclWI	GGATC	1 cut(s)	679
AcuI	CTGAAG	2 cut(s)	163, 382
AfaI	GTAC	3 cut(s)	56, 170, 341
AgsI	TTSAA	4 cut(s)	151, 290, 435, 739
AjnI	CCWGG	3 cut(s)	335, 515, 608
AleI	CACNNNNGTG	1 cut(s)	50
AluBI	AGCT	3 cut(s)	536, 661, 722
AluI	AGCT	3 cut(s)	536, 661, 722
AlwI	GGATC	1 cut(s)	679
AoxI	GGCC	2 cut(s)	367, 700
ApeKI	GCWGC	1 cut(s)	260
Asp718I	GGTACC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	2 cut(s)	364, 472
AsuII	TTCGAA	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	339
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BbsI	GAAGAC	1 cut(s)	571
BbvI	GCAGC	1 cut(s)	247
BcgI	CGANNNNNNTGC	2 cut(s)	455, 489
BciT130I	CCWGG	3 cut(s)	337, 517, 610
BciVI	GTATCC	1 cut(s)	350
BfaI	CTAG	2 cut(s)	200, 537
BfmI	CTRYAG	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	350
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	3 cut(s)	337, 517, 610
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	341
BmrFI	CCNGG	3 cut(s)	337, 517, 610
BmsI	GCATC	4 cut(s)	263, 285, 379, 583
BpiI	GAAGAC	1 cut(s)	571
Bpu14I	TTCGAA	1 cut(s)	489
BsaJI	CCNNGG	4 cut(s)	255, 264, 335, 515
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse1I	ACTGG	2 cut(s)	390, 604
BseBI	CCWGG	3 cut(s)	337, 517, 610
BseDI	CCNNGG	4 cut(s)	255, 264, 335, 515
BseGI	GGATG	3 cut(s)	126, 278, 394
BseMII	CTCAG	2 cut(s)	83, 725
BseNI	ACTGG	2 cut(s)	390, 604
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	247
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	2 cut(s)	369, 702
BshNI	GGYRCC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	369, 702
Bsp119I	TTCGAA	1 cut(s)	489
Bsp143I	GATC	2 cut(s)	477, 684
Bsp19I	CCATGG	2 cut(s)	255, 264
BspACI	CCGC	1 cut(s)	106
BspANI	GGCC	2 cut(s)	369, 702
BspCNI	CTCAG	2 cut(s)	82, 724
BspLI	GGNNCC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	679
BspT104I	TTCGAA	1 cut(s)	489
BspT107I	GGYRCC	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	390, 604
BssECI	CCNNGG	4 cut(s)	255, 264, 335, 515
BssMI	GATC	2 cut(s)	477, 684
BssT1I	CCWWGG	2 cut(s)	255, 264
Bst2UI	CCWGG	3 cut(s)	337, 517, 610
Bst4CI	ACNGT	3 cut(s)	112, 238, 497
Bst6I	CTCTTC	3 cut(s)	308, 401, 499
BstBI	TTCGAA	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	4 cut(s)	69, 323, 551, 711
BstDSI	CCRYGG	2 cut(s)	255, 264
BstF5I	GGATG	3 cut(s)	126, 278, 394
BstKTI	GATC	2 cut(s)	480, 687
BstMBI	GATC	2 cut(s)	477, 684
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	3 cut(s)	337, 517, 610
BstNSI	RCATGY	1 cut(s)	144
BstSCI	CCNGG	3 cut(s)	335, 515, 608
BstSFI	CTRYAG	1 cut(s)	559
BstV1I	GCAGC	1 cut(s)	247
BstV2I	GAAGAC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuI	GTATCC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	369, 702
BtgI	CCRYGG	2 cut(s)	255, 264
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	126, 278, 394
BtsIMutI	CAGTG	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	668
Csp6I	GTAC	3 cut(s)	55, 169, 340
CviAII	CATG	6 cut(s)	50, 89, 141, 256, 265, 649
CviQI	GTAC	3 cut(s)	55, 169, 340
DdeI	CTNAG	4 cut(s)	69, 323, 551, 711
DpnI	GATC	2 cut(s)	479, 686
DpnII	GATC	2 cut(s)	477, 684
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	3 cut(s)	308, 401, 499
EarI	CTCTTC	3 cut(s)	308, 401, 499
Eco130I	CCWWGG	2 cut(s)	255, 264
Eco147I	AGGCCT	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	668
Eco57I	CTGAAG	2 cut(s)	163, 382
EcoRII	CCWGG	3 cut(s)	335, 515, 608
EcoT14I	CCWWGG	2 cut(s)	255, 264
EcoT22I	ATGCAT	1 cut(s)	278
ErhI	CCWWGG	2 cut(s)	255, 264
FaeI	CATG	6 cut(s)	53, 92, 144, 259, 268, 652
FatI	CATG	6 cut(s)	49, 88, 140, 255, 264, 648
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	3 cut(s)	113, 285, 401
Fsp4HI	GCNGC	1 cut(s)	261
FspBI	CTAG	2 cut(s)	200, 537
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	369, 702
Hin1II	CATG	6 cut(s)	53, 92, 144, 259, 268, 652
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HphI	GGTGA	2 cut(s)	364, 472
Hpy166II	GTNNAC	3 cut(s)	55, 463, 717
Hpy188I	TCNGA	3 cut(s)	72, 103, 630
Hpy188III	TCNNGA	2 cut(s)	682, 736
Hpy8I	GTNNAC	3 cut(s)	55, 463, 717
HpyAV	CCTTC	2 cut(s)	218, 692
HpyCH4III	ACNGT	3 cut(s)	112, 238, 497
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	8 cut(s)	140, 191, 276, 392, 443, 574, 641, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	4 cut(s)	69, 323, 551, 711
HpySE526I	ACGT	1 cut(s)	74
Hsp92II	CATG	6 cut(s)	53, 92, 144, 259, 268, 652
KpnI	GGTACC	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	477, 684
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	4 cut(s)	263, 285, 379, 583
MaeI	CTAG	2 cut(s)	200, 537
MaeII	ACGT	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	248, 554
MalI	GATC	2 cut(s)	479, 686
MboI	GATC	2 cut(s)	477, 684
MboII	GAAGA	5 cut(s)	295, 388, 516, 576, 664
MflI	RGATCY	1 cut(s)	684
MluCI	AATT	1 cut(s)	415
MmeI	TCCRAC	2 cut(s)	198, 250
MnlI	CCTC	8 cut(s)	14, 17, 134, 311, 353, 359, 380, 720
Mph1103I	ATGCAT	1 cut(s)	278
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	2 cut(s)	50, 222
MspR9I	CCNGG	3 cut(s)	337, 517, 610
MvaI	CCWGG	3 cut(s)	337, 517, 610
MwoI	GCNNNNNNNGC	1 cut(s)	449
NcoI	CCATGG	2 cut(s)	255, 264
NdeII	GATC	2 cut(s)	477, 684
NlaIII	CATG	6 cut(s)	53, 92, 144, 259, 268, 652
NlaIV	GGNNCC	1 cut(s)	341
NmuCI	GTSAC	2 cut(s)	248, 554
NsiI	ATGCAT	1 cut(s)	278
NspI	RCATGY	1 cut(s)	144
NspV	TTCGAA	1 cut(s)	489
OliI	CACNNNNGTG	1 cut(s)	50
PaeI	GCATGC	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	369
PflFI	GACNNNGTC	1 cut(s)	200
PfoI	TCCNGGA	1 cut(s)	608
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	3 cut(s)	335, 515, 608
PspGI	CCWGG	3 cut(s)	335, 515, 608
PspN4I	GGNNCC	1 cut(s)	341
PspPI	GGNCC	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	684
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	3 cut(s)	56, 170, 341
RsaNI	GTAC	3 cut(s)	55, 169, 340
RseI	CAYNNNNRTG	2 cut(s)	50, 222
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	2 cut(s)	477, 684
Sau96I	GGNCC	1 cut(s)	668
ScrFI	CCNGG	3 cut(s)	337, 517, 610
SfaNI	GCATC	4 cut(s)	263, 285, 379, 583
SfcI	CTRYAG	1 cut(s)	559
SfuI	TTCGAA	1 cut(s)	489
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	50, 222
SphI	GCATGC	1 cut(s)	144
Sse9I	AATT	1 cut(s)	415
SseBI	AGGCCT	1 cut(s)	369
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	2 cut(s)	200, 537
StuI	AGGCCT	1 cut(s)	369
StyD4I	CCNGG	3 cut(s)	335, 515, 608
StyI	CCWWGG	2 cut(s)	255, 264
TaaI	ACNGT	3 cut(s)	112, 238, 497
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	1 cut(s)	489
TasI	AATT	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	248, 554
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	2 cut(s)	248, 554
TspDTI	ATGAA	1 cut(s)	665
TspGWI	ACGGA	2 cut(s)	72, 378
TspRI	CASTG	1 cut(s)	187
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	668
XceI	RCATGY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	262, 382
XspI	CTAG	2 cut(s)	200, 537
Zsp2I	ATGCAT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.