Prupe.7G085800_v2.0.a1

strigolactone esterase D14

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013729
Physical Location & Seq
Reverse (-)
12075067 .. 12076639
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G085800.1

Sequence Viewer

Length: 822 bp
ATGGAAGCCCTATGCCATGGAGGAGGCATTGTCCAAGCCCTAAACACTCATGTGTATGGAAATGGCAGCCAGACTTTGGTTCTGGCTCATGGGTTTGGTTCAGACCAAACAGTTTGGCACTTCCTCATTCCCTTTCTTGCATGCTATTTCAAGGTTGTGGTTTTCGACTTGGTTTTTTCACCAAATGTTGATCCAAAACTCTATGACCCTGAAAGGTACGACTCAAATTTTGGTGCCTACGCAGAGGACTTGCTGTGCCTTCTTGATCATCTCAATGTCAATAAGACTGTATATCTGGGCCACTCCATGTCTGCCATGGTTGGATGCATCGCTTCTATTCAAAGACCACACCTGTTTCAGCACCTTATCCTGCTAGGTGGCTCTCCCAGATACCTCAACAAAACAAGATACAATGGAGGCTTTACCAGAACAGAACTCGATGCATTCTTCAACCAAATCAATCAGAATTTCTCAAATTGGGTTCTAAGTTTTGCTCCAATAGCAATAGGTGTAAAAGACACAAGTGCCATAGCCGAGTTCGAAAACAGTTTGGGAAGAATGACACCCAAGATTGCAGTGAGTGTTGCTAGAACTGTATTTCTAAGCGACCTCAGAAGAATTTTGCCACAAGTTGTGGTGCCAAGTAGCATAATCCAATCCAGGAAAGATTTTATTGTTCCAAAAACGGTTGCGTTTTACATGAAGAAAAGGCTTGGTGGTCCTGCCAGAGTTAAGATATTAAATACAGAAGGCCATTTTCCCCAGTTGACAGTTCACCCTTTGCTCTTAAAAGTCCTGAAAAGATTTCTTCACATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1

Protein Analysis

274

Amino Acids

30.58

Weight (kDa)

9.45

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 233, 637
AccB7I CCANNNNNTGG 1 cut(s) 76
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 3 cut(s) 226, 466, 618
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 76
AgsI TTSAA 3 cut(s) 151, 341, 451
AjnI CCWGG 1 cut(s) 659
AleI CACNNNNGTG 1 cut(s) 50
AlwI GGATC 1 cut(s) 185
AoxI GGCC 2 cut(s) 298, 751
ApeKI GCWGC 1 cut(s) 66
ApoI RAATTY 3 cut(s) 226, 466, 618
ArsI GACNNNNNNTTYG 2 cut(s) 212, 244
AspS9I GGNCC 2 cut(s) 298, 719
AsuHPI GGTGA 2 cut(s) 171, 767
AsuII TTCGAA 1 cut(s) 540
AvaII GGWCC 1 cut(s) 719
BanI GGYRCC 2 cut(s) 233, 637
BbvI GCAGC 1 cut(s) 78
BciT130I CCWGG 1 cut(s) 661
BclI TGATCA 1 cut(s) 265
BfaI CTAG 2 cut(s) 374, 588
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 661
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 2 cut(s) 298, 719
BmiI GGNNCC 2 cut(s) 235, 639
BmrFI CCNGG 1 cut(s) 661
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 3 cut(s) 314, 336, 430
BmuI ACTGGG 1 cut(s) 757
Bpu14I TTCGAA 1 cut(s) 540
BsaJI CCNNGG 2 cut(s) 16, 315
BsaXI ACNNNNNCTCC 2 cut(s) 15, 45
Bsc4I CCNNNNNNNGG 1 cut(s) 76
Bse1I ACTGG 1 cut(s) 763
BseBI CCWGG 1 cut(s) 661
BseDI CCNNGG 2 cut(s) 16, 315
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 1 cut(s) 763
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 78
BshFI GGCC 2 cut(s) 300, 753
BshNI GGYRCC 2 cut(s) 233, 637
BslI CCNNNNNNNGG 1 cut(s) 76
BsmI GAATGC 1 cut(s) 443
BsnI GGCC 2 cut(s) 300, 753
Bsp119I TTCGAA 1 cut(s) 540
Bsp143I GATC 2 cut(s) 190, 265
Bsp19I CCATGG 2 cut(s) 16, 315
BspANI GGCC 2 cut(s) 300, 753
BspCNI CTCAG 1 cut(s) 624
BspLI GGNNCC 2 cut(s) 235, 639
BspPI GGATC 1 cut(s) 185
BspT104I TTCGAA 1 cut(s) 540
BspT107I GGYRCC 2 cut(s) 233, 637
BsrI ACTGG 1 cut(s) 763
BssECI CCNNGG 2 cut(s) 16, 315
BssMI GATC 2 cut(s) 190, 265
BssT1I CCWWGG 2 cut(s) 16, 315
Bst2UI CCWGG 1 cut(s) 661
Bst4CI ACNGT 6 cut(s) 112, 289, 548, 595, 688, 772
BstBI TTCGAA 1 cut(s) 540
BstC8I GCNNGC 1 cut(s) 142
BstDEI CTNAG 3 cut(s) 485, 602, 611
BstDSI CCRYGG 2 cut(s) 16, 315
BstF5I GGATG 1 cut(s) 329
BstKTI GATC 2 cut(s) 193, 268
BstMBI GATC 2 cut(s) 190, 265
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 1 cut(s) 661
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 659
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 2 cut(s) 300, 753
BtgI CCRYGG 2 cut(s) 16, 315
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 1 cut(s) 142
Cfr13I GGNCC 2 cut(s) 298, 719
Csp6I GTAC 1 cut(s) 217
CviAII CATG 7 cut(s) 17, 50, 89, 141, 307, 316, 700
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 3 cut(s) 485, 602, 611
DpnI GATC 2 cut(s) 192, 267
DpnII GATC 2 cut(s) 190, 265
Eco130I CCWWGG 2 cut(s) 16, 315
Eco47I GGWCC 1 cut(s) 719
EcoRII CCWGG 1 cut(s) 659
EcoT14I CCWWGG 2 cut(s) 16, 315
EcoT22I ATGCAT 2 cut(s) 329, 445
ErhI CCWWGG 2 cut(s) 16, 315
FaeI CATG 7 cut(s) 20, 53, 92, 144, 310, 319, 703
FatI CATG 7 cut(s) 16, 49, 88, 140, 306, 315, 699
FbaI TGATCA 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 2 cut(s) 374, 588
GluI GCNGC 1 cut(s) 67
HaeIII GGCC 2 cut(s) 300, 753
Hin1II CATG 7 cut(s) 20, 53, 92, 144, 310, 319, 703
HincII GTYRAC 1 cut(s) 768
HindII GTYRAC 1 cut(s) 768
HinfI GANTC 1 cut(s) 221
HphI GGTGA 2 cut(s) 171, 767
Hpy166II GTNNAC 2 cut(s) 768, 775
Hpy188I TCNGA 3 cut(s) 103, 465, 614
Hpy188III TCNNGA 2 cut(s) 263, 796
Hpy8I GTNNAC 2 cut(s) 768, 775
HpyAV CCTTC 2 cut(s) 269, 743
HpyCH4III ACNGT 6 cut(s) 112, 289, 548, 595, 688, 772
HpyCH4V TGCA 4 cut(s) 140, 327, 443, 575
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 3 cut(s) 485, 602, 611
Hsp92II CATG 7 cut(s) 20, 53, 92, 144, 310, 319, 703
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 190, 265
LmnI GCTCC 1 cut(s) 499
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 3 cut(s) 314, 336, 430
MaeI CTAG 2 cut(s) 374, 588
MalI GATC 2 cut(s) 192, 267
MboI GATC 2 cut(s) 190, 265
MboII GAAGA 5 cut(s) 439, 567, 627, 715, 800
MluCI AATT 4 cut(s) 226, 466, 475, 618
MlyI GAGTC 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 14, 17, 134, 238, 404, 410, 620
Mph1103I ATGCAT 2 cut(s) 329, 445
MseI TTAA 3 cut(s) 732, 740, 788
MslI CAYNNNNRTG 3 cut(s) 50, 54, 273
MspR9I CCNGG 1 cut(s) 661
Mva1269I GAATGC 1 cut(s) 443
MvaI CCWGG 1 cut(s) 661
MwoI GCNNNNNNNGC 1 cut(s) 500
NcoI CCATGG 2 cut(s) 16, 315
NdeII GATC 2 cut(s) 190, 265
NlaIII CATG 7 cut(s) 20, 53, 92, 144, 310, 319, 703
NlaIV GGNNCC 2 cut(s) 235, 639
NmeAIII GCCGAG 1 cut(s) 559
NsiI ATGCAT 2 cut(s) 329, 445
NspI RCATGY 1 cut(s) 144
NspV TTCGAA 1 cut(s) 540
OliI CACNNNNGTG 1 cut(s) 50
PaeI GCATGC 1 cut(s) 144
PctI GAATGC 1 cut(s) 443
PflMI CCANNNNNTGG 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 659
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 215
PpsI GAGTC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 659
PspGI CCWGG 1 cut(s) 659
PspN4I GGNNCC 2 cut(s) 235, 639
PspPI GGNCC 2 cut(s) 298, 719
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 3 cut(s) 50, 54, 273
SaqAI TTAA 3 cut(s) 732, 740, 788
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 2 cut(s) 190, 265
Sau96I GGNCC 2 cut(s) 298, 719
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 1 cut(s) 661
SetI ASST 8 cut(s) 156, 218, 354, 366, 379, 396, 511, 612
SfaNI GCATC 3 cut(s) 314, 336, 430
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 3 cut(s) 50, 54, 273
SphI GCATGC 1 cut(s) 144
Sse9I AATT 4 cut(s) 226, 466, 475, 618
SspMI CTAG 2 cut(s) 374, 588
StyD4I CCNGG 1 cut(s) 659
StyI CCWWGG 2 cut(s) 16, 315
TaaI ACNGT 6 cut(s) 112, 289, 548, 595, 688, 772
TaqI TCGA 3 cut(s) 165, 438, 540
TasI AATT 4 cut(s) 226, 466, 475, 618
Tru1I TTAA 3 cut(s) 732, 740, 788
Tru9I TTAA 3 cut(s) 732, 740, 788
TscAI CASTG 1 cut(s) 582
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 716
TspRI CASTG 1 cut(s) 582
Van91I CCANNNNNTGG 1 cut(s) 76
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 3 cut(s) 226, 466, 618
XceI RCATGY 1 cut(s) 144
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 2 cut(s) 374, 588
Zsp2I ATGCAT 2 cut(s) 329, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.