Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013729

Physical Location & Seq

Genomic Coordinates Forward (+)

22371537 .. 22372915

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGGTTGCCAATGGAACCATGGAGGAGGAATTGTCCAAGCTCTAAACACTCATGTGTACGGAAATGGTAGTCAAACCTTGGTTCTTGCTCATGGCTACGGTTCAGACCAGACGGTTTGGCACTACCTCATTCCCCTCCTTGCTTATTATTTCAAGGTTGTGGTTTTTGACTTGGTTTACTCTCCGAATGTGGATCCAAAACTCTACGACCCCAAGAGGTACACATCAGATTTCAATGGCTACGCTGACAACGTGCTTTGCCTTCTTGACGAGCTCAATGTGAAAAGGACCATATACCTGGGACATTCCATGTCTGCCATGGTTGGATGCGTTGCTGCTACTAAAAGACCACACCTTTTCCAGCACCTTATTCTGTTGAGTGGCTCTCCCAGGTACCTCAACACCACAGGATACACCGGAGGCTTTACCAGACCAGAGCTCGATGCAATCTTCAACCAAATTGATAAAAATTTCTCAAGTTGGATACCAAATTTTGCTCCACTAGCAATAGGTGCAAACAACACAACTGCAATAGTGGAGTTAGAACGCAGTTTCCGTAGAATGAAACCCAAGATTGCACTCAGTGCTGCGGAAAACGTTTTGCTAAGTGACCTCAGAAAAGTTTTGCCGAAAGTAATGGTGCCAACTAGCATAATCCAATCAAAGAAAGACATGGTGGTTCCGGAATCAGTTGCATTTTACATGAAAAGAATGCTTGGTGCTCCAGCAGAAGTTACAATCCTAGACACACAAGGACATTTCCCTCAGTTGACTGTTTATCCTTTGCTCTTAAAGGTTCTCAAAGGAATTCTCCACATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

274

Amino Acids

30.57

Weight (kDa)

9.21

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 134	2.6e-11	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	27 - 257	4.2e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013729)

Species	Orthologous Gene IDs
malus_domestica	MD12G1051000.v1.1 MD14G1049700.v1.1
prunus_persica	Prupe.7G085800_v2.0.a1
pyrus_communis	pycom12g04530 pycom12g04540 pycom14g04110
rosa_chinensis	RchiOBHm_Chr3g0478651
rosa_laevigata	RLG00000023637
rosa_multiflora	Rmu_co8105518.1_g000001 Rmu_sc0002454.1_g000001 Rmu_sc0005420.1_g000009
rosa_roxburghii	Rroxscaffold_6G00403240
rosa_rugosa	Rorug03G0166800
rosa_samantha	Rh3AG218900 Rh3BG250600 Rh3CG247400 Rh3DG243700
rosa_wichuraiana	Rw3G019680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	393
AccB1I	GGYRCC	2 cut(s)	393, 640
AccIII	TCCGGA	1 cut(s)	682
AciI	CCGC	1 cut(s)	590
AclI	AACGTT	1 cut(s)	597
AclWI	GGATC	2 cut(s)	188, 201
AcsI	RAATTY	3 cut(s)	469, 490, 807
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	59, 221, 395
AgsI	TTSAA	3 cut(s)	154, 235, 454
AjnI	CCWGG	2 cut(s)	297, 389
AleI	CACNNNNGTG	1 cut(s)	53
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	3 cut(s)	41, 274, 439
AluI	AGCT	3 cut(s)	41, 274, 439
Alw21I	GWGCWC	3 cut(s)	276, 441, 724
AlwI	GGATC	2 cut(s)	188, 201
Aor13HI	TCCGGA	1 cut(s)	682
ApeKI	GCWGC	2 cut(s)	335, 587
ApoI	RAATTY	3 cut(s)	469, 490, 807
Asp718I	GGTACC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	288
AvaII	GGWCC	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	193
BanI	GGYRCC	2 cut(s)	393, 640
BanII	GRGCYC	2 cut(s)	276, 441
Bbv12I	GWGCWC	3 cut(s)	276, 441, 724
BbvI	GCAGC	2 cut(s)	322, 574
BciT130I	CCWGG	2 cut(s)	299, 391
BciVI	GTATCC	2 cut(s)	404, 477
BfaI	CTAG	3 cut(s)	503, 648, 743
BfuI	GTATCC	2 cut(s)	404, 477
BisI	GCNGC	2 cut(s)	336, 588
BlsI	GCNGC	2 cut(s)	337, 589
Bme1390I	CCNGG	2 cut(s)	299, 391
Bme18I	GGWCC	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	5 cut(s)	17, 195, 395, 642, 681
BmrFI	CCNGG	2 cut(s)	299, 391
BmsI	GCATC	2 cut(s)	317, 433
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
BpmI	CTGGAG	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	460
BsaJI	CCNNGG	5 cut(s)	19, 78, 298, 318, 389
BsaWI	WCCGGW	2 cut(s)	416, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
BseAI	TCCGGA	1 cut(s)	682
BseBI	CCWGG	2 cut(s)	299, 391
BseDI	CCNNGG	5 cut(s)	19, 78, 298, 318, 389
BseGI	GGATG	1 cut(s)	332
BseMII	CTCAG	3 cut(s)	595, 628, 779
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	2 cut(s)	322, 574
BshNI	GGYRCC	2 cut(s)	393, 640
BsiHKAI	GWGCWC	3 cut(s)	276, 441, 724
BsiSI	CCGG	2 cut(s)	417, 683
BslFI	GGGAC	1 cut(s)	315
BsmFI	GGGAC	1 cut(s)	315
BsmI	GAATGC	1 cut(s)	717
Bsp1286I	GDGCHC	3 cut(s)	276, 441, 724
Bsp13I	TCCGGA	1 cut(s)	682
Bsp143I	GATC	1 cut(s)	193
Bsp19I	CCATGG	2 cut(s)	19, 318
BspACI	CCGC	1 cut(s)	590
BspCNI	CTCAG	3 cut(s)	594, 627, 778
BspEI	TCCGGA	1 cut(s)	682
BspLI	GGNNCC	5 cut(s)	17, 195, 395, 642, 681
BspPI	GGATC	2 cut(s)	188, 201
BspT107I	GGYRCC	2 cut(s)	393, 640
BssECI	CCNNGG	5 cut(s)	19, 78, 298, 318, 389
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	3 cut(s)	19, 78, 318
Bst2UI	CCWGG	2 cut(s)	299, 391
Bst4CI	ACNGT	3 cut(s)	101, 115, 775
BstAPI	GCANNNNNTGC	2 cut(s)	512, 584
BstDEI	CTNAG	4 cut(s)	581, 605, 614, 765
BstDSI	CCRYGG	2 cut(s)	19, 318
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	503, 512, 584
BstNI	CCWGG	2 cut(s)	299, 391
BstSCI	CCNGG	2 cut(s)	297, 389
BstV1I	GCAGC	2 cut(s)	322, 574
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	193
BsuI	GTATCC	2 cut(s)	404, 477
BtgI	CCRYGG	2 cut(s)	19, 318
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	1 cut(s)	589
Cfr13I	GGNCC	1 cut(s)	288
Csp6I	GTAC	3 cut(s)	58, 220, 394
CviAII	CATG	7 cut(s)	20, 53, 92, 310, 319, 673, 703
CviJI	RGCY	7 cut(s)	41, 96, 240, 274, 384, 423, 439
CviKI_1	RGCY	7 cut(s)	41, 96, 240, 274, 384, 423, 439
CviQI	GTAC	3 cut(s)	58, 220, 394
DdeI	CTNAG	4 cut(s)	581, 605, 614, 765
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	584
Ecl136II	GAGCTC	2 cut(s)	274, 439
Eco130I	CCWWGG	3 cut(s)	19, 78, 318
Eco24I	GRGCYC	2 cut(s)	276, 441
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	2 cut(s)	274, 439
EcoICRI	GAGCTC	2 cut(s)	274, 439
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	297, 389
EcoT14I	CCWWGG	3 cut(s)	19, 78, 318
EcoT38I	GRGCYC	2 cut(s)	276, 441
ErhI	CCWWGG	3 cut(s)	19, 78, 318
FaeI	CATG	7 cut(s)	23, 56, 95, 313, 322, 676, 706
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	7 cut(s)	19, 52, 91, 309, 318, 672, 702
Fnu4HI	GCNGC	2 cut(s)	336, 588
FokI	GGATG	1 cut(s)	339
FriOI	GRGCYC	2 cut(s)	276, 441
Fsp4HI	GCNGC	2 cut(s)	336, 588
FspBI	CTAG	3 cut(s)	503, 648, 743
GluI	GCNGC	2 cut(s)	336, 588
GsuI	CTGGAG	1 cut(s)	708
HapII	CCGG	2 cut(s)	417, 683
Hin1II	CATG	7 cut(s)	23, 56, 95, 313, 322, 676, 706
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HinfI	GANTC	1 cut(s)	686
HpaII	CCGG	2 cut(s)	417, 683
Hpy166II	GTNNAC	4 cut(s)	58, 178, 222, 771
Hpy188I	TCNGA	4 cut(s)	106, 186, 229, 617
Hpy188III	TCNNGA	2 cut(s)	266, 683
Hpy8I	GTNNAC	4 cut(s)	58, 178, 222, 771
HpyAV	CCTTC	1 cut(s)	272
HpyCH4III	ACNGT	3 cut(s)	101, 115, 775
HpyCH4IV	ACGT	2 cut(s)	252, 597
HpyCH4V	TGCA	5 cut(s)	446, 515, 530, 578, 695
HpyF10VI	GCNNNNNNNGC	3 cut(s)	503, 512, 584
HpyF3I	CTNAG	4 cut(s)	581, 605, 614, 765
HpySE526I	ACGT	2 cut(s)	252, 597
Hsp92II	CATG	7 cut(s)	23, 56, 95, 313, 322, 676, 706
Kpn2I	TCCGGA	1 cut(s)	682
KpnI	GGTACC	1 cut(s)	397
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	2 cut(s)	502, 727
Lsp1109I	GCAGC	2 cut(s)	322, 574
LweI	GCATC	2 cut(s)	317, 433
MaeI	CTAG	3 cut(s)	503, 648, 743
MaeII	ACGT	2 cut(s)	252, 597
MaeIII	GTNAC	2 cut(s)	608, 733
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	442
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	3 cut(s)	276, 441, 724
MluCI	AATT	5 cut(s)	30, 459, 469, 490, 807
MmeI	TCCRAC	2 cut(s)	304, 461
MnlI	CCTC	9 cut(s)	17, 20, 137, 146, 210, 407, 413, 623, 774
MroI	TCCGGA	1 cut(s)	682
MseI	TTAA	1 cut(s)	791
MslI	CAYNNNNRTG	1 cut(s)	53
MspI	CCGG	2 cut(s)	417, 683
MspR9I	CCNGG	2 cut(s)	299, 391
Mva1269I	GAATGC	1 cut(s)	717
MvaI	CCWGG	2 cut(s)	299, 391
MwoI	GCNNNNNNNGC	3 cut(s)	503, 512, 584
NcoI	CCATGG	2 cut(s)	19, 318
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	7 cut(s)	23, 56, 95, 313, 322, 676, 706
NlaIV	GGNNCC	5 cut(s)	17, 195, 395, 642, 681
NmuCI	GTSAC	1 cut(s)	608
OliI	CACNNNNGTG	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 553
PctI	GAATGC	1 cut(s)	717
PfeI	GAWTC	1 cut(s)	686
PkrI	GCNGC	2 cut(s)	337, 589
Psp124BI	GAGCTC	2 cut(s)	276, 441
Psp1406I	AACGTT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	297, 389
PspGI	CCWGG	2 cut(s)	297, 389
PspN4I	GGNNCC	5 cut(s)	17, 195, 395, 642, 681
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	3 cut(s)	59, 221, 395
RsaNI	GTAC	3 cut(s)	58, 220, 394
RseI	CAYNNNNRTG	1 cut(s)	53
SacI	GAGCTC	2 cut(s)	276, 441
SaqAI	TTAA	1 cut(s)	791
SatI	GCNGC	2 cut(s)	336, 588
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	299, 391
SduI	GDGCHC	3 cut(s)	276, 441, 724
SfaNI	GCATC	2 cut(s)	317, 433
SinI	GGWCC	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	475
SmoI	CTYRAG	1 cut(s)	475
Sse9I	AATT	5 cut(s)	30, 459, 469, 490, 807
SsiI	CCGC	1 cut(s)	590
SspMI	CTAG	3 cut(s)	503, 648, 743
SstI	GAGCTC	2 cut(s)	276, 441
StyD4I	CCNGG	2 cut(s)	297, 389
StyI	CCWWGG	3 cut(s)	19, 78, 318
TaaI	ACNGT	3 cut(s)	101, 115, 775
TaiI	ACGT	2 cut(s)	255, 600
TaqI	TCGA	1 cut(s)	441
TasI	AATT	5 cut(s)	30, 459, 469, 490, 807
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	1 cut(s)	791
Tru9I	TTAA	1 cut(s)	791
TscAI	CASTG	1 cut(s)	589
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	2 cut(s)	335, 587
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	2 cut(s)	578, 719
TspGWI	ACGGA	2 cut(s)	75, 545
TspRI	CASTG	1 cut(s)	589
VpaK11BI	GGWCC	1 cut(s)	288
XapI	RAATTY	3 cut(s)	469, 490, 807
XcmI	CCANNNNNNNNNTGG	2 cut(s)	17, 316
XspI	CTAG	3 cut(s)	503, 648, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.