MD12G1112900.v1.1

Histidine--tRNA

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
17862164 .. 17870364
8201 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1112900.v1.1.491

Sequence Viewer

Length: 1473 bp
ATGCTCTCTGCAGTCTCGTCTTCCCTCCTTACCTTCCACAAGCCCTTCACTCGCGCTCTTCGACTCCCCCTCCCCAAACTCCCCATTTCTTCAAACCCTAAACCCCTCTCTTCTCTCTCCCCCGCCACTTCTTCTCTCATCCCCAATTCCACCGGCGGTGGTCGCGCCGGGGCTTTATCTCCGGCCCCGGCCACCGACGACCTCCAGAAGATCGATGTTAACCCTCCCAAGGGCACGAGGGACTTCCCACCCGAAGATATGCGCCTCCGCAACTGGCTCTTCTACAATTTCAGAGAGGTCTCGCGGCTGTTCGGCTTCGAAGAGGTCGACTATCCGGTTCTTGAGACGGAGGCTCTGTTTATCAGAAAGGCAGGGGAGGAGATTCGAGACCAGCTGTATTGCTTCGAAGATCGGGGAAATCGTCGCGTTGCGCTGAGGCCGGAGCTCACTCCTTCTTTGGCAAGGCTGGTGATACAGAAAGGAAAATCTCTATCCCTTCCGTTGAAATGGTTTGCCATTGGGCAGTGTTGGCGGTATGAGAGGATGACAAGGGGGCGGCGTCGGGAGCATTACCAGTGGAATATGGATGTTATTGGTGTACCTGAGGTTACGGCTGAAGCAGAACTTATTTCTTCAATTGTCACTTTCTTCAAGCGAGTAGGAATTACAGCATCAGATGTTGGATTCAAGGTTTCTAGTCGTAAGGTTTTACAAGAAGTATTGAGGCGTTATTCCATACCCGAAGCTTTATTTGGCAAAGTTTGCATCATCATAGACAAGATAGAGAAGATTCCAGTGGATGATATAAAAAATGAGTTGAAATCTGCTGGTGTATCTGAAGAGGCTATTGAACAGTTATTGCAAGTTCTTTCCATAAAGTCATTGACAAAGCTGGAAGAGATACTTGGAGGAGCAGGGGAAGCAGTTGCTGATCTGAAACAACTATTCTCTCTTGCTGACAAATTTGGTTACTCTGAATGGATTCAGTTTGATGCTTCTATTGTTCGTGGCCTTGCCTACTACACTGGTATTGTCTTTGAGGGTTTTGATAGAGGAGGAAAGTTACGAGCCATTTGTGGTGGTGGGCGATATGACCGCTTGCTTTCTACTTTTGGTGGTGATGACATTTCTGCTTGTGGATTTGGGTTTGGTGATGCTGTTATAGTGGAATTGCTTAAGGAGAAGGGTCTTCTACCGGAACTCAGCCTGCAAGTAGAGAACATTGTGTGTGCTCTTGATCCTGGACTCCAAGGAGCAGCTGCAACAGTTGCCACCATACTCAGGGGAAAAGGTCAAAGTGTTGATTTAGTCTTGGAGAACAAACCGCTTAAATGGGTATTCAAGCGTGCATCACGAATAAATGCTAACAGGCTGATATTGGTGGGAGATTCGGAGTGGCAAAGGGGTATGGTGAGTGTGAAAGTCCTTTCTTCCGGCGAACAACGTGAGATCAAACTTGATGAACTAGAGTGA

Protein Analysis

491

Amino Acids

54.38

Weight (kDa)

8.56

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_His PF13393 78 - 382 2.8e-42 Histidyl-tRNA synthetase
tRNA-synt_2b PF00587 133 - 229 8.6e-11 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 411 - 489 2e-09 Anticodon binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 327
AccII CGCG 4 cut(s) 54, 165, 304, 426
AciI CCGC 8 cut(s) 123, 156, 268, 304, 532, 556, 1096, 1325
AclWI GGATC 1 cut(s) 1232
AcoI YGGCCR 1 cut(s) 189
AcsI RAATTY 1 cut(s) 962
AcuI CTGAAG 2 cut(s) 636, 858
AcyI GRCGYC 1 cut(s) 559
AfaI GTAC 1 cut(s) 600
AfiI CCNNNNNNNGG 3 cut(s) 229, 230, 1281
AflII CTTAAG 1 cut(s) 1175
AgsI TTSAA 8 cut(s) 93, 505, 636, 652, 688, 820, 851, 1342
AjnI CCWGG 1 cut(s) 1240
AjuI GAANNNNNNNTTGG 4 cut(s) 735, 767, 888, 920
AluBI AGCT 5 cut(s) 394, 445, 746, 892, 1259
AluI AGCT 5 cut(s) 394, 445, 746, 892, 1259
Alw21I GWGCWC 2 cut(s) 447, 1234
Alw26I GTCTC 4 cut(s) 19, 304, 338, 381
AlwI GGATC 1 cut(s) 1232
AlwNI CAGNNNCTG 1 cut(s) 929
AoxI GGCC 4 cut(s) 183, 189, 437, 1009
ApeKI GCWGC 2 cut(s) 1256, 1259
ApoI RAATTY 1 cut(s) 962
Asp700I GAANNNNTTC 1 cut(s) 981
AspLEI GCGC 4 cut(s) 56, 167, 264, 433
AspS9I GGNCC 1 cut(s) 184
AsuC2I CCSGG 2 cut(s) 169, 188
AsuHPI GGTGA 4 cut(s) 481, 1130, 1163, 1423
AsuII TTCGAA 2 cut(s) 318, 405
AxyI CCTNAGG 1 cut(s) 603
BaeGI GKGCMC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 235
BbsI GAAGAC 2 cut(s) 12, 1181
Bbv12I GWGCWC 2 cut(s) 447, 1234
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 1246, 1268
BceAI ACGGC 1 cut(s) 627
BciT130I CCWGG 1 cut(s) 1242
BcnI CCSGG 2 cut(s) 169, 188
BcoDI GTCTC 4 cut(s) 19, 304, 338, 381
BfaI CTAG 2 cut(s) 696, 1466
BfmI CTRYAG 1 cut(s) 9
BfrI CTTAAG 1 cut(s) 1175
BisI GCNGC 4 cut(s) 305, 557, 1257, 1260
BlsI GCNGC 4 cut(s) 306, 558, 1258, 1261
Bme1390I CCNGG 3 cut(s) 169, 188, 1242
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 3 cut(s) 169, 188, 1242
BmsI GCATC 5 cut(s) 680, 774, 982, 1144, 1358
BpiI GAAGAC 2 cut(s) 12, 1181
BpmI CTGGAG 1 cut(s) 188
Bpu10I CCTNAGC 1 cut(s) 434
Bpu14I TTCGAA 2 cut(s) 318, 405
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 169, 188
Bsa29I ATCGAT 1 cut(s) 213
BsaHI GRCGYC 1 cut(s) 559
BsaI GGTCTC 2 cut(s) 304, 381
BsaJI CCNNGG 4 cut(s) 168, 186, 228, 1249
BsaWI WCCGGW 2 cut(s) 334, 1195
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 229, 230, 1281
Bse118I RCCGGY 1 cut(s) 152
Bse1I ACTGG 4 cut(s) 278, 574, 794, 1030
Bse21I CCTNAGG 1 cut(s) 603
BseBI CCWGG 1 cut(s) 1242
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 168, 186, 228, 1249
BseGI GGATG 4 cut(s) 138, 549, 592, 805
BseLI CCNNNNNNNGG 3 cut(s) 229, 230, 1281
BseMII CTCAG 4 cut(s) 425, 594, 1216, 1294
BseNI ACTGG 4 cut(s) 278, 574, 794, 1030
BseRI GAGGAG 3 cut(s) 392, 924, 1068
BseSI GKGCMC 1 cut(s) 236
BseXI GCAGC 2 cut(s) 1246, 1268
Bsh1236I CGCG 4 cut(s) 54, 165, 304, 426
BshFI GGCC 4 cut(s) 185, 191, 439, 1011
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 2 cut(s) 447, 1234
BsiSI CCGG 8 cut(s) 153, 168, 182, 188, 335, 440, 1196, 1434
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 229, 230, 1281
BsmAI GTCTC 4 cut(s) 19, 304, 338, 381
BsmBI CGTCTC 1 cut(s) 338
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 4 cut(s) 185, 191, 439, 1011
Bso31I GGTCTC 2 cut(s) 304, 381
Bsp119I TTCGAA 2 cut(s) 318, 405
Bsp1286I GDGCHC 3 cut(s) 236, 447, 1234
Bsp143I GATC 5 cut(s) 210, 409, 931, 1237, 1449
BspACI CCGC 8 cut(s) 123, 156, 268, 304, 532, 556, 1096, 1325
BspANI GGCC 4 cut(s) 185, 191, 439, 1011
BspCNI CTCAG 4 cut(s) 426, 595, 1215, 1293
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 4 cut(s) 54, 165, 304, 426
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 1 cut(s) 1232
BspQI GCTCTTC 2 cut(s) 63, 284
BspT104I TTCGAA 2 cut(s) 318, 405
BspTI CTTAAG 1 cut(s) 1175
BspTNI GGTCTC 2 cut(s) 304, 381
BsrFI RCCGGY 1 cut(s) 152
BsrI ACTGG 4 cut(s) 278, 574, 794, 1030
BssAI RCCGGY 1 cut(s) 152
BssECI CCNNGG 4 cut(s) 168, 186, 228, 1249
BssMI GATC 5 cut(s) 210, 409, 931, 1237, 1449
BssNI GRCGYC 1 cut(s) 559
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 228, 1249
Bst2BI CACGAG 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 1242
Bst4CI ACNGT 2 cut(s) 855, 1267
Bst6I CTCTTC 6 cut(s) 63, 115, 284, 315, 834, 891
BstACI GRCGYC 1 cut(s) 559
BstAFI CTTAAG 1 cut(s) 1175
BstAPI GCANNNNNTGC 2 cut(s) 762, 1268
BstBI TTCGAA 2 cut(s) 318, 405
BstC8I GCNNGC 3 cut(s) 1100, 1208, 1347
BstDEI CTNAG 4 cut(s) 434, 603, 1202, 1280
BstF5I GGATG 4 cut(s) 138, 549, 592, 805
BstFNI CGCG 4 cut(s) 54, 165, 304, 426
BstHHI GCGC 4 cut(s) 56, 167, 264, 433
BstKTI GATC 5 cut(s) 213, 412, 934, 1240, 1452
BstMAI GTCTC 4 cut(s) 19, 304, 338, 381
BstMBI GATC 5 cut(s) 210, 409, 931, 1237, 1449
BstMWI GCNNNNNNNGC 6 cut(s) 162, 529, 565, 762, 920, 1268
BstNI CCWGG 1 cut(s) 1242
BstSCI CCNGG 3 cut(s) 167, 186, 1240
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 236
BstUI CGCG 4 cut(s) 54, 165, 304, 426
BstV1I GCAGC 2 cut(s) 1246, 1268
BstV2I GAAGAC 2 cut(s) 12, 1181
Bsu15I ATCGAT 1 cut(s) 213
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 4 cut(s) 185, 191, 439, 1011
BsuTUI ATCGAT 1 cut(s) 213
BtsCI GGATG 4 cut(s) 138, 549, 592, 805
BtsI GCAGTG 1 cut(s) 530
BtsIMutI CAGTG 4 cut(s) 530, 581, 801, 1023
Cac8I GCNNGC 3 cut(s) 1100, 1208, 1347
CaiI CAGNNNCTG 1 cut(s) 929
CfoI GCGC 4 cut(s) 56, 167, 264, 433
Cfr10I RCCGGY 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 184
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 1 cut(s) 548
Csp6I GTAC 1 cut(s) 599
CviQI GTAC 1 cut(s) 599
DdeI CTNAG 4 cut(s) 434, 603, 1202, 1280
DpnI GATC 5 cut(s) 212, 411, 933, 1239, 1451
DpnII GATC 5 cut(s) 210, 409, 931, 1237, 1449
EaeI YGGCCR 1 cut(s) 189
Eam1104I CTCTTC 6 cut(s) 63, 115, 284, 315, 834, 891
EarI CTCTTC 6 cut(s) 63, 115, 284, 315, 834, 891
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 2 cut(s) 228, 1249
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 2 cut(s) 304, 381
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 636, 858
Eco81I CCTNAGG 1 cut(s) 603
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 1240
EcoT14I CCWWGG 2 cut(s) 228, 1249
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 228, 1249
Esp3I CGTCTC 1 cut(s) 338
FalI AAGNNNNNCTT 4 cut(s) 609, 641, 888, 920
FaqI GGGAC 1 cut(s) 254
FauI CCCGC 1 cut(s) 130
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 305, 557, 1257, 1260
FokI GGATG 4 cut(s) 125, 556, 599, 812
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 4 cut(s) 305, 557, 1257, 1260
FspBI CTAG 2 cut(s) 696, 1466
GlaI GCGC 4 cut(s) 55, 166, 263, 432
GluI GCNGC 4 cut(s) 305, 557, 1257, 1260
GsuI CTGGAG 1 cut(s) 188
HaeIII GGCC 4 cut(s) 185, 191, 439, 1011
HapII CCGG 8 cut(s) 153, 168, 182, 188, 335, 440, 1196, 1434
HgaI GACGC 1 cut(s) 548
HhaI GCGC 4 cut(s) 56, 167, 264, 433
Hin1I GRCGYC 1 cut(s) 559
Hin6I GCGC 4 cut(s) 54, 165, 262, 431
HinP1I GCGC 4 cut(s) 54, 165, 262, 431
HincII GTYRAC 2 cut(s) 220, 328
HindII GTYRAC 2 cut(s) 220, 328
HindIII AAGCTT 1 cut(s) 744
HinfI GANTC 7 cut(s) 63, 382, 684, 790, 982, 1245, 1388
HpaI GTTAAC 1 cut(s) 220
HpaII CCGG 8 cut(s) 153, 168, 182, 188, 335, 440, 1196, 1434
HphI GGTGA 4 cut(s) 481, 1130, 1163, 1423
Hpy166II GTNNAC 3 cut(s) 220, 328, 599
Hpy188I TCNGA 7 cut(s) 293, 365, 676, 838, 936, 976, 1393
Hpy188III TCNNGA 6 cut(s) 205, 341, 386, 563, 1235, 1353
Hpy8I GTNNAC 3 cut(s) 220, 328, 599
Hpy99I CGWCG 3 cut(s) 200, 426, 564
HpyAV CCTTC 5 cut(s) 43, 55, 462, 506, 1177
HpyCH4III ACNGT 2 cut(s) 855, 1267
HpyCH4IV ACGT 1 cut(s) 1444
HpyCH4V TGCA 6 cut(s) 11, 765, 862, 1210, 1262, 1349
HpyF10VI GCNNNNNNNGC 6 cut(s) 162, 529, 565, 762, 920, 1268
HpyF3I CTNAG 4 cut(s) 434, 603, 1202, 1280
HpySE526I ACGT 1 cut(s) 1444
Hsp92I GRCGYC 1 cut(s) 559
HspAI GCGC 4 cut(s) 54, 165, 262, 431
KspAI GTTAAC 1 cut(s) 220
Kzo9I GATC 5 cut(s) 210, 409, 931, 1237, 1449
LguI GCTCTTC 2 cut(s) 63, 284
LmnI GCTCC 4 cut(s) 442, 565, 911, 1253
Lsp1109I GCAGC 2 cut(s) 1246, 1268
LweI GCATC 5 cut(s) 680, 774, 982, 1144, 1358
MaeI CTAG 2 cut(s) 696, 1466
MaeII ACGT 1 cut(s) 1444
MaeIII GTNAC 4 cut(s) 607, 640, 968, 1062
MalI GATC 5 cut(s) 212, 411, 933, 1239, 1451
MboI GATC 5 cut(s) 210, 409, 931, 1237, 1449
MfeI CAATTG 1 cut(s) 636
MhlI GDGCHC 3 cut(s) 236, 447, 1234
MluCI AATT 6 cut(s) 145, 286, 636, 663, 962, 1169
MlyI GAGTC 2 cut(s) 57, 1239
MmeI TCCRAC 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 981
MseI TTAA 3 cut(s) 219, 1176, 1329
MspA1I CMGCKG 2 cut(s) 394, 1259
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 8 cut(s) 153, 168, 182, 188, 335, 440, 1196, 1434
MspR9I CCNGG 3 cut(s) 169, 188, 1242
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 1 cut(s) 1242
MvnI CGCG 4 cut(s) 54, 165, 304, 426
MwoI GCNNNNNNNGC 6 cut(s) 162, 529, 565, 762, 920, 1268
NciI CCSGG 2 cut(s) 169, 188
NdeII GATC 5 cut(s) 210, 409, 931, 1237, 1449
NlaIV GGNNCC 1 cut(s) 186
NmuCI GTSAC 1 cut(s) 640
NspV TTCGAA 2 cut(s) 318, 405
PciSI GCTCTTC 2 cut(s) 63, 284
PcsI WCGNNNNNNNCGW 3 cut(s) 58, 324, 418
PdmI GAANNNNTTC 1 cut(s) 981
PfeI GAWTC 5 cut(s) 382, 684, 790, 982, 1388
PfoI TCCNGGA 1 cut(s) 1240
PkrI GCNGC 4 cut(s) 306, 558, 1258, 1261
PleI GAGTC 2 cut(s) 57, 1239
PpsI GAGTC 2 cut(s) 57, 1239
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 1240
PspGI CCWGG 1 cut(s) 1240
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 184
PstI CTGCAG 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 929
PvuII CAGCTG 2 cut(s) 394, 1259
RsaI GTAC 1 cut(s) 600
RsaNI GTAC 1 cut(s) 599
SacI GAGCTC 1 cut(s) 447
SalI GTCGAC 1 cut(s) 326
SapI GCTCTTC 2 cut(s) 63, 284
SaqAI TTAA 3 cut(s) 219, 1176, 1329
SatI GCNGC 4 cut(s) 305, 557, 1257, 1260
Sau3AI GATC 5 cut(s) 210, 409, 931, 1237, 1449
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 2 cut(s) 57, 1239
ScrFI CCNGG 3 cut(s) 169, 188, 1242
SduI GDGCHC 3 cut(s) 236, 447, 1234
SfaNI GCATC 5 cut(s) 680, 774, 982, 1144, 1358
SfcI CTRYAG 1 cut(s) 9
SfuI TTCGAA 2 cut(s) 318, 405
SgrAI CRCCGGYG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 341, 1175
SmoI CTYRAG 2 cut(s) 341, 1175
Sse9I AATT 6 cut(s) 145, 286, 636, 663, 962, 1169
SsiI CCGC 8 cut(s) 123, 156, 268, 304, 532, 556, 1096, 1325
SspMI CTAG 2 cut(s) 696, 1466
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 3 cut(s) 167, 186, 1240
StyI CCWWGG 2 cut(s) 228, 1249
TaaI ACNGT 2 cut(s) 855, 1267
TaiI ACGT 1 cut(s) 1447
TaqI TCGA 6 cut(s) 61, 213, 318, 327, 385, 405
TasI AATT 6 cut(s) 145, 286, 636, 663, 962, 1169
TauI GCSGC 2 cut(s) 307, 559
TfiI GAWTC 5 cut(s) 382, 684, 790, 982, 1388
Tru1I TTAA 3 cut(s) 219, 1176, 1329
Tru9I TTAA 3 cut(s) 219, 1176, 1329
TscAI CASTG 4 cut(s) 530, 581, 801, 1030
TseFI GTSAC 1 cut(s) 640
TseI GCWGC 2 cut(s) 1256, 1259
Tsp45I GTSAC 1 cut(s) 640
TspGWI ACGGA 2 cut(s) 362, 489
TspRI CASTG 4 cut(s) 530, 581, 801, 1030
Vha464I CTTAAG 1 cut(s) 1175
XapI RAATTY 1 cut(s) 962
XmiI GTMKAC 1 cut(s) 327
XmnI GAANNNNTTC 1 cut(s) 981
XspI CTAG 2 cut(s) 696, 1466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.