Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019034.1

Orthogroup ID

OG0006089

Physical Location & Seq

Genomic Coordinates Forward (+)

454 .. 1479

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019034.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atgtcagtaagcaagctcagcttaaccagaagcatagccatgctctccacaatttcttcttccctccttatcctcaataagcccttaacccgcgccctcagattccccatccccaacctacccctcgccacaaaccctaggggcctctcttctctatccaccgccgctataagcaacaatgccggcggcggtcgtgccggtgcattgtctccggcgccggtctcggaggacctgcagaagatcgacgtcaaccctcccaagggcaccagggacttcccgcccgaggacatgcgcctccgcagctggctcttcttcaatttcagagaggtttcgcggctgtttggcttcgaggaggtggattttccggtgctcgagtcggaggctctgtttgttagaaaagcaggggaggagattcgagaccagctgtattgcttcgaagacaggggaaatcgtcgtgttgcgttgaggcctgagcttactccttcgttggcgaggctggtgatacagaaaggaaaatctctatcgcttccattaaaatggtttgcagtggggcagtgttggcgctacgagagaatgacaaggggacggcgtagggagcattaccagtggaatatggatatcattggtgtacctgaggttacggattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004821 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006427 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_His

Protein Analysis

215

Amino Acids

24.32

Weight (kDa)

9.92

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46100 AT5G03406
fragaria_vesca	FvH4_3g29130 FvH4_3g29130 FvH4_3g29130
malus_domestica	MD04G1093200.v1.1 MD12G1112900.v1.1
prunus_persica	Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1
pyrus_communis	pycom04g08820
rosa_chinensis	RchiOBHm_Chr3g0470291
rosa_laevigata	RLG00000024282
rosa_multiflora	Rmu_sc0011073.1_g000001 Rmu_sc0019034.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410990
rosa_rugosa	Rorug03G0107800 Rorug03G0107900
rosa_samantha	Rh3AG157600 Rh3BG181800 Rh3CG172500 Rh3DG193100
rosa_wichuraiana	Rw3G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	214, 263
AccII	CGCG	2 cut(s)	93, 334
AciI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
AcyI	GRCGYC	2 cut(s)	215, 246
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	3 cut(s)	259, 260, 283
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	16, 21, 303, 424, 475
AluI	AGCT	5 cut(s)	16, 21, 303, 424, 475
Alw21I	GWGCWC	1 cut(s)	372
Alw26I	GTCTC	3 cut(s)	213, 226, 411
Ama87I	CYCGRG	2 cut(s)	281, 371
AoxI	GGCC	2 cut(s)	142, 467
ApeKI	GCWGC	1 cut(s)	300
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	4 cut(s)	95, 217, 294, 564
AspS9I	GGNCC	2 cut(s)	142, 229
AsuHPI	GGTGA	1 cut(s)	511
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	281, 371
AvaII	GGWCC	1 cut(s)	229
AvrII	CCTAGG	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	214, 263
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	213, 226, 411
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	2 cut(s)	218, 565
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	4 cut(s)	165, 187, 301, 335
BlnI	CCTAGG	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	17
BlsI	GCNGC	4 cut(s)	166, 188, 302, 336
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	2 cut(s)	281, 371
BmgT120I	GGNCC	2 cut(s)	142, 229
BmiI	GGNNCC	3 cut(s)	143, 216, 265
BmrFI	CCNGG	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	444
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	435
BsaHI	GRCGYC	2 cut(s)	215, 246
BsaI	GGTCTC	2 cut(s)	226, 411
BsaJI	CCNNGG	4 cut(s)	137, 258, 267, 282
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 260, 283
Bse118I	RCCGGY	3 cut(s)	182, 197, 217
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	4 cut(s)	137, 258, 267, 282
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	3 cut(s)	259, 260, 283
BseMII	CTCAG	4 cut(s)	31, 112, 462, 624
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	365, 422
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	93, 334
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	2 cut(s)	144, 469
BshNI	GGYRCC	2 cut(s)	214, 263
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	372
BsiHKCI	CYCGRG	2 cut(s)	281, 371
BsiSI	CCGG	5 cut(s)	183, 198, 212, 218, 365
BslFI	GGGAC	2 cut(s)	284, 597
BslI	CCNNNNNNNGG	3 cut(s)	259, 260, 283
BsmAI	GTCTC	3 cut(s)	213, 226, 411
BsmFI	GGGAC	2 cut(s)	284, 597
BsnI	GGCC	2 cut(s)	144, 469
Bso31I	GGTCTC	2 cut(s)	226, 411
BsoBI	CYCGRG	2 cut(s)	281, 371
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	2 cut(s)	266, 372
Bsp143I	GATC	1 cut(s)	240
Bsp1720I	GCTNAGC	1 cut(s)	17
BspACI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
BspANI	GGCC	2 cut(s)	144, 469
BspCNI	CTCAG	4 cut(s)	30, 111, 463, 625
BspFNI	CGCG	2 cut(s)	93, 334
BspLI	GGNNCC	3 cut(s)	143, 216, 265
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	435
BspT107I	GGYRCC	2 cut(s)	214, 263
BspTNI	GGTCTC	2 cut(s)	226, 411
BsrFI	RCCGGY	3 cut(s)	182, 197, 217
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	3 cut(s)	182, 197, 217
BssECI	CCNNGG	4 cut(s)	137, 258, 267, 282
BssMI	GATC	1 cut(s)	240
BssNI	GRCGYC	2 cut(s)	215, 246
BssT1I	CCWWGG	2 cut(s)	137, 258
Bst2UI	CCWGG	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	154, 314
BstACI	GRCGYC	2 cut(s)	215, 246
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	14, 184, 305
BstDEI	CTNAG	4 cut(s)	17, 98, 471, 633
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	2 cut(s)	93, 334
BstH2I	RGCGCY	2 cut(s)	218, 565
BstHHI	GCGC	4 cut(s)	95, 217, 294, 564
BstKTI	GATC	1 cut(s)	243
BstMAI	GTCTC	3 cut(s)	213, 226, 411
BstMBI	GATC	1 cut(s)	240
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 300, 559, 595
BstNI	CCWGG	1 cut(s)	268
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	266
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	2 cut(s)	93, 334
BstV1I	GCAGC	1 cut(s)	312
BstV2I	GAAGAC	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	537
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	144, 469
BtsCI	GGATG	1 cut(s)	108
BtsI	GCAGTG	2 cut(s)	552, 560
BtsIMutI	CAGTG	3 cut(s)	552, 560, 611
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	14, 184, 305
CfoI	GCGC	4 cut(s)	95, 217, 294, 564
Cfr10I	RCCGGY	3 cut(s)	182, 197, 217
Cfr13I	GGNCC	2 cut(s)	142, 229
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	2 cut(s)	40, 289
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	4 cut(s)	17, 98, 471, 633
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eam1104I	CTCTTC	2 cut(s)	154, 314
EarI	CTCTTC	2 cut(s)	154, 314
Eco130I	CCWWGG	2 cut(s)	137, 258
Eco147I	AGGCCT	1 cut(s)	469
Eco31I	GGTCTC	2 cut(s)	226, 411
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	2 cut(s)	281, 371
EcoO109I	RGGNCCY	2 cut(s)	142, 229
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	619
EcoT14I	CCWWGG	2 cut(s)	137, 258
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	137, 258
FaeI	CATG	2 cut(s)	43, 292
FaiI	YATR	5 cut(s)	35, 41, 170, 290, 614
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	2 cut(s)	284, 597
FatI	CATG	2 cut(s)	39, 288
FauI	CCCGC	2 cut(s)	98, 285
Fnu4HI	GCNGC	4 cut(s)	165, 187, 301, 335
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	165, 187, 301, 335
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	4 cut(s)	94, 216, 293, 563
GluI	GCNGC	4 cut(s)	165, 187, 301, 335
HaeII	RGCGCY	2 cut(s)	218, 565
HaeIII	GGCC	2 cut(s)	144, 469
HapII	CCGG	5 cut(s)	183, 198, 212, 218, 365
HhaI	GCGC	4 cut(s)	95, 217, 294, 564
Hin1I	GRCGYC	2 cut(s)	215, 246
Hin1II	CATG	2 cut(s)	43, 292
Hin6I	GCGC	4 cut(s)	93, 215, 292, 562
HinP1I	GCGC	4 cut(s)	93, 215, 292, 562
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	3 cut(s)	102, 374, 412
HpaII	CCGG	5 cut(s)	183, 198, 212, 218, 365
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	2 cut(s)	250, 629
Hpy188I	TCNGA	4 cut(s)	101, 226, 323, 379
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	2 cut(s)	250, 629
Hpy99I	CGWCG	2 cut(s)	248, 456
HpyAV	CCTTC	1 cut(s)	492
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	203, 235, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 300, 559, 595
HpyF3I	CTNAG	4 cut(s)	17, 98, 471, 633
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	2 cut(s)	215, 246
Hsp92II	CATG	2 cut(s)	43, 292
HspAI	GCGC	4 cut(s)	93, 215, 292, 562
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	1 cut(s)	240
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	1 cut(s)	595
Lsp1109I	GCAGC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MboII	GAAGA	7 cut(s)	48, 51, 141, 250, 301, 304, 449
MhlI	GDGCHC	2 cut(s)	266, 372
MluCI	AATT	2 cut(s)	51, 316
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	357
MroNI	GCCGGC	1 cut(s)	182
MseI	TTAA	3 cut(s)	23, 86, 533
MslI	CAYNNNNRTG	2 cut(s)	38, 535
MspA1I	CMGCKG	2 cut(s)	303, 424
MspI	CCGG	5 cut(s)	183, 198, 212, 218, 365
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
MvnI	CGCG	2 cut(s)	93, 334
MwoI	GCNNNNNNNGC	4 cut(s)	18, 300, 559, 595
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	1 cut(s)	240
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	43, 292
NlaIV	GGNNCC	3 cut(s)	143, 216, 265
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	371
PceI	AGGCCT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	184
PfeI	GAWTC	2 cut(s)	102, 412
PkrI	GCNGC	4 cut(s)	166, 188, 302, 336
PleI	GAGTC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	382
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	143, 216, 265
PspPI	GGNCC	2 cut(s)	142, 229
PspPPI	RGGWCCY	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	237
PvuII	CAGCTG	2 cut(s)	303, 424
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	38, 535
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	23, 86, 533
SatI	GCNGC	4 cut(s)	165, 187, 301, 335
Sau3AI	GATC	1 cut(s)	240
Sau96I	GGNCC	2 cut(s)	142, 229
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	2 cut(s)	266, 372
SfcI	CTRYAG	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	38, 535
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	51, 316
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	138
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	2 cut(s)	137, 258
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	5 cut(s)	243, 348, 372, 415, 435
TasI	AATT	2 cut(s)	51, 316
TauI	GCSGC	3 cut(s)	167, 189, 337
TfiI	GAWTC	2 cut(s)	102, 412
Tru1I	TTAA	3 cut(s)	23, 86, 533
Tru9I	TTAA	3 cut(s)	23, 86, 533
TscAI	CASTG	3 cut(s)	552, 560, 611
TseI	GCWGC	1 cut(s)	300
TspRI	CASTG	3 cut(s)	552, 560, 611
VpaK11BI	GGWCC	1 cut(s)	229
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	137
XspI	CTAG	1 cut(s)	138
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.