Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006089

Physical Location & Seq

Genomic Coordinates Forward (+)

8660451 .. 8661863

Gene Structure 1413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0107800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTCAACCACCGTCCCACCCGTCCTCCCGATCTCCACCACCTCCGTCGCCGCCGCCGCCGGATCCATCGAGTCCCAGGCCTCCCAGCCTCCGATCGCCACCCCGGCCTTCCGCGCCTTCATCAACCACATCACCGACACCGTCCGCAACGGCCTCTCCCAGCGCCGCCCCTGGGCCGAGCTCGCCGACCGCTCCGCCTTCGCCAAGCCCGAGTCCTTCTCCGACGCCACCCTCCGCGTCCGCAAGAACTACTCCTACTTCCGCGTCAACTACCTCGCCGCCGTCGCCCTCATCGTCGCCGTCTCCCTCTTCACCCACCCCTTCTCCCTCGTCGTCCTCCTCGGCCTCCTCGCCGCCTGGCTCTTCCTCTACCTCTTCCGCCCCTCCGATCAGCCCCTCGTTATCTTCGGCCGGACTTTCTCCGACACCCAAACCCTAATGGGCCTCGTCGGCCTCAGCGTCTTCGTCGTCTTCCTCACCTCCGTCGGATCCGTCCTCATCTCCGCTCTCCTGGTCGGAGTCGCCGTCGTCCTCGTTCACGGTGCCATTAGGGTTCCGGAGGATCTGTTCTTGGATGAGCAAGACACTTCTGCCTCCACCGGATTCCTATCATTCCTCAACGGCGCCGCCTCCAATGTCGCCGCCGCCACCGCCCCGGCCATGGCTGCTGCTCGCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004821 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006427 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_His

Protein Analysis

226

Amino Acids

23.93

Weight (kDa)

8.16

Isoelectric Point (pI)

35.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA1	PF03208	51 - 194	2.9e-51	PRA1 family protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46100 AT5G03406
fragaria_vesca	FvH4_3g29130 FvH4_3g29130 FvH4_3g29130
malus_domestica	MD04G1093200.v1.1 MD12G1112900.v1.1
prunus_persica	Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1
pyrus_communis	pycom04g08820
rosa_chinensis	RchiOBHm_Chr3g0470291
rosa_laevigata	RLG00000024282
rosa_multiflora	Rmu_sc0011073.1_g000001 Rmu_sc0019034.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410990
rosa_rugosa	Rorug03G0107800 Rorug03G0107900
rosa_samantha	Rh3AG157600 Rh3BG181800 Rh3CG172500 Rh3DG193100
rosa_wichuraiana	Rw3G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	542, 623
AccBSI	CCGCTC	2 cut(s)	192, 506
AccII	CGCG	4 cut(s)	114, 237, 264, 675
AccIII	TCCGGA	1 cut(s)	556
AclWI	GGATC	5 cut(s)	57, 70, 483, 496, 570
AcoI	YGGCCR	2 cut(s)	409, 657
AcyI	GRCGYC	2 cut(s)	225, 624
AfiI	CCNNNNNNNGG	2 cut(s)	172, 661
AjnI	CCWGG	4 cut(s)	75, 170, 356, 510
AloI	GAACNNNNNNTCC	2 cut(s)	551, 583
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	5 cut(s)	57, 70, 483, 496, 570
Ama87I	CYCGRG	1 cut(s)	209
Aor13HI	TCCGGA	1 cut(s)	556
AoxI	GGCC	9 cut(s)	78, 105, 151, 174, 343, 409, 442, 451, 657
ApeKI	GCWGC	2 cut(s)	665, 668
AspLEI	GCGC	3 cut(s)	116, 165, 626
AspS9I	GGNCC	2 cut(s)	174, 442
AsuC2I	CCSGG	2 cut(s)	104, 656
AsuHPI	GGTGA	3 cut(s)	124, 304, 469
AvaI	CYCGRG	1 cut(s)	209
BamHI	GGATCC	2 cut(s)	62, 488
BanI	GGYRCC	2 cut(s)	542, 623
BanII	GRGCYC	1 cut(s)	183
BbsI	GAAGAC	2 cut(s)	454, 463
Bbv12I	GWGCWC	1 cut(s)	183
BbvCI	CCTCAGC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	652, 655
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	5 cut(s)	166, 266, 284, 509, 637
BciT130I	CCWGG	4 cut(s)	77, 172, 358, 512
BcnI	CCSGG	2 cut(s)	104, 656
BcoDI	GTCTC	1 cut(s)	307
BfoI	RGCGCY	2 cut(s)	166, 627
BglI	GCCNNNNNGGC	2 cut(s)	104, 450
Bme1390I	CCNGG	6 cut(s)	77, 104, 172, 358, 512, 656
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	2 cut(s)	174, 442
BmiI	GGNNCC	5 cut(s)	64, 490, 544, 555, 625
BmrFI	CCNGG	6 cut(s)	77, 104, 172, 358, 512, 656
BpiI	GAAGAC	2 cut(s)	454, 463
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
Bpu10I	CCTNAGC	1 cut(s)	455
BpuMI	CCSGG	2 cut(s)	104, 656
BsaBI	GATNNNNATC	1 cut(s)	607
BsaHI	GRCGYC	2 cut(s)	225, 624
BsaJI	CCNNGG	7 cut(s)	75, 102, 170, 171, 340, 654, 660
BsaWI	WCCGGW	2 cut(s)	556, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 661
Bse8I	GATNNNNATC	1 cut(s)	607
BseAI	TCCGGA	1 cut(s)	556
BseBI	CCWGG	4 cut(s)	77, 172, 358, 512
BseDI	CCNNGG	7 cut(s)	75, 102, 170, 171, 340, 654, 660
BseGI	GGATG	1 cut(s)	580
BseJI	GATNNNNATC	1 cut(s)	607
BseLI	CCNNNNNNNGG	2 cut(s)	172, 661
BseMII	CTCAG	1 cut(s)	469
BseRI	GAGGAG	2 cut(s)	329, 338
BseX3I	CGGCCG	1 cut(s)	409
BseXI	GCAGC	2 cut(s)	652, 655
BseYI	CCCAGC	2 cut(s)	84, 159
Bsh1236I	CGCG	4 cut(s)	114, 237, 264, 675
Bsh1285I	CGRYCG	3 cut(s)	96, 190, 412
BshFI	GGCC	9 cut(s)	80, 107, 153, 176, 345, 411, 444, 453, 659
BshNI	GGYRCC	2 cut(s)	542, 623
BsiEI	CGRYCG	3 cut(s)	96, 190, 412
BsiHKAI	GWGCWC	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	6 cut(s)	60, 104, 412, 557, 600, 656
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	172, 661
BsmAI	GTCTC	1 cut(s)	307
BsmBI	CGTCTC	1 cut(s)	307
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	9 cut(s)	80, 107, 153, 176, 345, 411, 444, 453, 659
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp13I	TCCGGA	1 cut(s)	556
Bsp143I	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
Bsp19I	CCATGG	1 cut(s)	660
BspANI	GGCC	9 cut(s)	80, 107, 153, 176, 345, 411, 444, 453, 659
BspCNI	CTCAG	1 cut(s)	468
BspEI	TCCGGA	1 cut(s)	556
BspFNI	CGCG	4 cut(s)	114, 237, 264, 675
BspLI	GGNNCC	5 cut(s)	64, 490, 544, 555, 625
BspPI	GGATC	5 cut(s)	57, 70, 483, 496, 570
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	542, 623
BsrBI	CCGCTC	2 cut(s)	192, 506
BssECI	CCNNGG	7 cut(s)	75, 102, 170, 171, 340, 654, 660
BssMI	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
BssNI	GRCGYC	2 cut(s)	225, 624
BssT1I	CCWWGG	1 cut(s)	660
Bst2UI	CCWGG	4 cut(s)	77, 172, 358, 512
Bst4CI	ACNGT	3 cut(s)	13, 142, 542
Bst6I	CTCTTC	3 cut(s)	314, 368, 380
BstACI	GRCGYC	2 cut(s)	225, 624
BstC8I	GCNNGC	2 cut(s)	183, 673
BstDEI	CTNAG	1 cut(s)	455
BstDSI	CCRYGG	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	580
BstFNI	CGCG	4 cut(s)	114, 237, 264, 675
BstH2I	RGCGCY	2 cut(s)	166, 627
BstHHI	GCGC	3 cut(s)	116, 165, 626
BstKTI	GATC	6 cut(s)	33, 65, 96, 391, 491, 565
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
BstMCI	CGRYCG	3 cut(s)	96, 190, 412
BstMWI	GCNNNNNNNGC	8 cut(s)	56, 104, 113, 182, 284, 450, 650, 665
BstNI	CCWGG	4 cut(s)	77, 172, 358, 512
BstSCI	CCNGG	6 cut(s)	75, 102, 170, 356, 510, 654
BstUI	CGCG	4 cut(s)	114, 237, 264, 675
BstV1I	GCAGC	2 cut(s)	652, 655
BstV2I	GAAGAC	2 cut(s)	454, 463
BstX2I	RGATCY	3 cut(s)	62, 488, 562
BstYI	RGATCY	3 cut(s)	62, 488, 562
BstZI	CGGCCG	1 cut(s)	409
BsuRI	GGCC	9 cut(s)	80, 107, 153, 176, 345, 411, 444, 453, 659
BtgI	CCRYGG	1 cut(s)	660
BtsCI	GGATG	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	183, 673
CfoI	GCGC	3 cut(s)	116, 165, 626
Cfr13I	GGNCC	2 cut(s)	174, 442
CseI	GACGC	4 cut(s)	226, 233, 253, 448
CviAII	CATG	1 cut(s)	661
DdeI	CTNAG	1 cut(s)	455
DinI	GGCGCC	1 cut(s)	625
DpnI	GATC	6 cut(s)	32, 64, 95, 390, 490, 564
DpnII	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
EaeI	YGGCCR	2 cut(s)	409, 657
EagI	CGGCCG	1 cut(s)	409
Eam1104I	CTCTTC	3 cut(s)	314, 368, 380
EarI	CTCTTC	3 cut(s)	314, 368, 380
EciI	GGCGGA	2 cut(s)	184, 368
Ecl136II	GAGCTC	1 cut(s)	181
EclXI	CGGCCG	1 cut(s)	409
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	80
Eco24I	GRGCYC	1 cut(s)	183
Eco52I	CGGCCG	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	181
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	4 cut(s)	75, 170, 356, 510
EcoT14I	CCWWGG	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	183
EgeI	GGCGCC	1 cut(s)	625
EheI	GGCGCC	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	307
FaeI	CATG	1 cut(s)	664
FaiI	YATR	1 cut(s)	662
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	660
FokI	GGATG	1 cut(s)	587
FriOI	GRGCYC	1 cut(s)	183
GlaI	GCGC	3 cut(s)	115, 164, 625
GsaI	CCCAGC	2 cut(s)	88, 163
HaeII	RGCGCY	2 cut(s)	166, 627
HaeIII	GGCC	9 cut(s)	80, 107, 153, 176, 345, 411, 444, 453, 659
HapII	CCGG	6 cut(s)	60, 104, 412, 557, 600, 656
HgaI	GACGC	4 cut(s)	226, 233, 253, 448
HhaI	GCGC	3 cut(s)	116, 165, 626
Hin1I	GRCGYC	2 cut(s)	225, 624
Hin1II	CATG	1 cut(s)	664
Hin6I	GCGC	3 cut(s)	114, 163, 624
HinP1I	GCGC	3 cut(s)	114, 163, 624
HincII	GTYRAC	2 cut(s)	6, 268
HindII	GTYRAC	2 cut(s)	6, 268
HinfI	GANTC	4 cut(s)	71, 212, 519, 603
HpaII	CCGG	6 cut(s)	60, 104, 412, 557, 600, 656
HphI	GGTGA	3 cut(s)	124, 304, 469
Hpy166II	GTNNAC	3 cut(s)	6, 268, 538
Hpy188I	TCNGA	6 cut(s)	93, 223, 388, 424, 488, 518
Hpy188III	TCNNGA	2 cut(s)	28, 557
Hpy8I	GTNNAC	3 cut(s)	6, 268, 538
Hpy99I	CGWCG	9 cut(s)	50, 227, 287, 299, 335, 452, 470, 488, 530
HpyAV	CCTTC	5 cut(s)	118, 127, 208, 226, 331
HpyCH4III	ACNGT	3 cut(s)	13, 142, 542
HpyF10VI	GCNNNNNNNGC	8 cut(s)	56, 104, 113, 182, 284, 450, 650, 665
HpyF3I	CTNAG	1 cut(s)	455
Hsp92I	GRCGYC	2 cut(s)	225, 624
Hsp92II	CATG	1 cut(s)	664
HspAI	GCGC	3 cut(s)	114, 163, 624
KasI	GGCGCC	1 cut(s)	623
Kpn2I	TCCGGA	1 cut(s)	556
Kzo9I	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	652, 655
MalI	GATC	6 cut(s)	32, 64, 95, 390, 490, 564
MbiI	CCGCTC	2 cut(s)	192, 506
MboI	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
MboII	GAAGA	6 cut(s)	301, 355, 367, 397, 454, 463
MflI	RGATCY	3 cut(s)	62, 488, 562
MhlI	GDGCHC	1 cut(s)	183
Mly113I	GGCGCC	1 cut(s)	624
MlyI	GAGTC	3 cut(s)	80, 221, 528
MmeI	TCCRAC	4 cut(s)	246, 447, 466, 496
MroI	TCCGGA	1 cut(s)	556
MspI	CCGG	6 cut(s)	60, 104, 412, 557, 600, 656
MspR9I	CCNGG	6 cut(s)	77, 104, 172, 358, 512, 656
MvaI	CCWGG	4 cut(s)	77, 172, 358, 512
MvnI	CGCG	4 cut(s)	114, 237, 264, 675
MwoI	GCNNNNNNNGC	8 cut(s)	56, 104, 113, 182, 284, 450, 650, 665
NarI	GGCGCC	1 cut(s)	624
NciI	CCSGG	2 cut(s)	104, 656
NcoI	CCATGG	1 cut(s)	660
NdeII	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
NlaIII	CATG	1 cut(s)	664
NlaIV	GGNNCC	5 cut(s)	64, 490, 544, 555, 625
NmeAIII	GCCGAG	2 cut(s)	202, 321
PasI	CCCWGGG	1 cut(s)	171
PceI	AGGCCT	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	368
PcsI	WCGNNNNNNNCGW	4 cut(s)	207, 291, 456, 522
PfeI	GAWTC	1 cut(s)	603
PflFI	GACNNNGTC	1 cut(s)	140
Ple19I	CGATCG	1 cut(s)	96
PleI	GAGTC	3 cut(s)	79, 220, 527
PluTI	GGCGCC	1 cut(s)	627
PpsI	GAGTC	3 cut(s)	79, 220, 527
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	4 cut(s)	75, 170, 356, 510
PspFI	CCCAGC	2 cut(s)	84, 159
PspGI	CCWGG	4 cut(s)	75, 170, 356, 510
PspN4I	GGNNCC	5 cut(s)	64, 490, 544, 555, 625
PspPI	GGNCC	2 cut(s)	174, 442
PsrI	GAACNNNNNNTAC	2 cut(s)	239, 271
PsuI	RGATCY	3 cut(s)	62, 488, 562
PsyI	GACNNNGTC	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	96
SacI	GAGCTC	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	368
Sau3AI	GATC	6 cut(s)	30, 62, 93, 388, 488, 562
Sau96I	GGNCC	2 cut(s)	174, 442
SchI	GAGTC	3 cut(s)	80, 221, 528
ScrFI	CCNGG	6 cut(s)	77, 104, 172, 358, 512, 656
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	44, 183, 276, 375, 482
SfiI	GGCCNNNNNGGCC	1 cut(s)	450
SfoI	GGCGCC	1 cut(s)	625
SseBI	AGGCCT	1 cut(s)	80
SspDI	GGCGCC	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	183
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	6 cut(s)	75, 102, 170, 356, 510, 654
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	3 cut(s)	13, 142, 542
TaqI	TCGA	1 cut(s)	69
TauI	GCSGC	9 cut(s)	53, 56, 59, 168, 281, 356, 629, 644, 647
TfiI	GAWTC	1 cut(s)	603
TseI	GCWGC	2 cut(s)	665, 668
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	3 cut(s)	34, 472, 481
Tth111I	GACNNNGTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.