Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006089

Physical Location & Seq

Genomic Coordinates Reverse (-)

33513089 .. 33519252

Gene Structure 6164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1641 bp

ATGTCAGTAAGCAAGCTCAGCTTAACCAGAAGCATAGCCATGCTCTCTACAATTTCTTCTTCCCTCCTTATCCTCAATAAGCCCTTAACCCGCGCCCTCAGATTCCCCATCCCCAACCTACCCCTCGCCACAAACCCTAGGGGCCTCTCTGCTCTATCCACCGCCGCTATAAGCAACAATGCCGGCGGCGGTCGTACCGGTGCATTGTCTCCGGCGCCGGTCACGGAGGACCTGCAGAAGATAGACGTCAACCCTCCCAAGGGCACCAGGGACTTCCCGCCAGAGGACATGCGCCTCCGCAGCTGGCTCTTCTTCAATTTCAGAGAGGTTTCGCGGTTGTTTGGCTTCGAGGAGGTGGATTTTCCGGTGCTCGAGTCGGAGGCTCTGTTTGTTAGAAAAGCAGGGGAGGAGATTCGAGACCAGCTGTATTGTTTCGAAGACAGGGGAAATCGTCGTGTTGCGTTGAGGCCTGAGCTTACTCCTTCGTTGGCGAGGCTGGTAATACAGAAAGGAAAATCTCTATCCCTTCCATTAAAATGGTTTGCAGTGGGGCAGTGTTGGCGCTACGAGAGAATGACAAGGGGACGGCGTAGGGAGCATTACCAGTGGAATATGGATATTATTGGTGTACCTGAGGTTACGGCTGAAGCAGAACTTATTTCTGCAATTGTCACTTTCTTCAAGCGATTAGGAATTACAGCTTCGGATGTTGGATTTAAGGTTTCTAGTCGAAAGGTTTTACAAGAAGTATTGAGACGTTACTCCATACCGGAAGCTTTGTTTGGCAAGGTTTGCATCATCATAGACAAGATAGAGAAGCTTCCATTGGTGGAAATCAAAAAAGAGTTAGAATCTGTTGGTGTATTGGAAGAAGCAATTGAGCAGTTATTGCAAGTTCTTTCCGTAAAGTCATTGACAGAGTTGGAAGAGATACTTGGAGATTCTGGGGAAGCAGTTGCTGATCTGAAGCAGCTGTTCTCTCTTGTGGACAAATTTGGTTATTCTGAATGGATTCAGTTCGATGCTTCTATTGTTCGTGGCCTTGCCTACTATACTGGTATAGTCTTCGAGGGTTTTGATAGAGGAGGAAAGTTGCGAGCCATTTGTGGTGGTGGACGATATGACCGGTTGCTCTCTACTTTTGGTGGCGATGATATTCCTGCTTGTGGCTTTGGATTTGGTGATGCTGTCATAATAGAATTGCTCAAGGAGAAGGGTCTTCTGCCAGAACTCGGCCTGCAAGTAGAGAACATCGTATGTGCTCTGGATCCTGGACTTCAAGGAGCAGCTGCAACAGTTGCCACCATACTCAGGGAGAAAGGTCAAAGTGTTGATTTAGTCTTGGAGAGCAAACCACTCAAATGGGTATTCAAGCGTGCTTCACGAATAAATGCTAACAGGCTGATCTTGGTGGGAGATTCAGAGTGGCAAAAGGGTATGGTCGGTGTAAAAATTCTGTCTACTGACTCTGATAATGGGTGCTGGAACGTAAATGGAAATTCCCTTTATGAGGTAGATTCTGGAACTAAGACACTTGCTGGTATAACAATGCAGTATAAGAAAAGTGTGAGCCAGTGTGCATCCGTGAACTATCTTCCTCATGAAGAAAGCGTAGATGAAATGATGTCTGTATCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004821 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006427 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_His

Protein Analysis

546

Amino Acids

60.43

Weight (kDa)

6.08

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_His	PF13393	88 - 392	3.8e-42	Histidyl-tRNA synthetase
tRNA-synt_2b	PF00587	143 - 239	5.9e-11	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46100 AT5G03406
fragaria_vesca	FvH4_3g29130 FvH4_3g29130 FvH4_3g29130
malus_domestica	MD04G1093200.v1.1 MD12G1112900.v1.1
prunus_persica	Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1 Prupe.6G232000_v2.0.a1
pyrus_communis	pycom04g08820
rosa_chinensis	RchiOBHm_Chr3g0470291
rosa_laevigata	RLG00000024282
rosa_multiflora	Rmu_sc0011073.1_g000001 Rmu_sc0019034.1_g000001
rosa_roxburghii	Rroxscaffold_6G00410990
rosa_rugosa	Rorug03G0107800 Rorug03G0107900
rosa_samantha	Rh3AG157600 Rh3BG181800 Rh3CG172500 Rh3DG193100
rosa_wichuraiana	Rw3G014990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	249
Acc36I	ACCTGC	1 cut(s)	240
AccB1I	GGYRCC	2 cut(s)	214, 263
AccI	GTMKAC	1 cut(s)	1460
AccII	CGCG	2 cut(s)	93, 334
AciI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
AclWI	GGATC	2 cut(s)	1262, 1275
AcsI	RAATTY	3 cut(s)	992, 1452, 1498
AcuI	CTGAAG	2 cut(s)	666, 986
AcyI	GRCGYC	2 cut(s)	215, 246
AfaI	GTAC	2 cut(s)	196, 630
AfiI	CCNNNNNNNGG	7 cut(s)	259, 260, 283, 1166, 1232, 1311, 1510
AgeI	ACCGGT	2 cut(s)	197, 1125
AgsI	TTSAA	4 cut(s)	316, 682, 1280, 1372
AjnI	CCWGG	2 cut(s)	266, 1270
AjuI	GAANNNNNNNTTGG	6 cut(s)	765, 797, 809, 841, 918, 950
Alw21I	GWGCWC	2 cut(s)	372, 1264
Alw26I	GTCTC	3 cut(s)	213, 411, 748
AlwI	GGATC	2 cut(s)	1262, 1275
AlwNI	CAGNNNCTG	1 cut(s)	959
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	4 cut(s)	142, 467, 1039, 1234
ApeKI	GCWGC	4 cut(s)	300, 970, 1286, 1289
ApoI	RAATTY	3 cut(s)	992, 1452, 1498
AsiGI	ACCGGT	2 cut(s)	197, 1125
Asp700I	GAANNNNTTC	1 cut(s)	1011
AspA2I	CCTAGG	1 cut(s)	137
AspLEI	GCGC	4 cut(s)	95, 217, 294, 564
AspS9I	GGNCC	2 cut(s)	142, 229
AsuHPI	GGTGA	1 cut(s)	1193
AsuII	TTCGAA	1 cut(s)	435
AvaI	CYCGRG	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	229
AvrII	CCTAGG	1 cut(s)	137
AxyI	CCTNAGG	1 cut(s)	633
BaeGI	GKGCMC	1 cut(s)	266
BamHI	GGATCC	1 cut(s)	1267
BanI	GGYRCC	2 cut(s)	214, 263
BbsI	GAAGAC	3 cut(s)	444, 1057, 1211
Bbv12I	GWGCWC	2 cut(s)	372, 1264
BbvI	GCAGC	4 cut(s)	312, 982, 1276, 1298
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	602, 657
BciT130I	CCWGG	2 cut(s)	268, 1272
BcoDI	GTCTC	3 cut(s)	213, 411, 748
BfaI	CTAG	2 cut(s)	138, 726
BfmI	CTRYAG	1 cut(s)	233
BfoI	RGCGCY	2 cut(s)	218, 565
BfuAI	ACCTGC	1 cut(s)	240
BisI	GCNGC	6 cut(s)	165, 187, 301, 971, 1287, 1290
BlnI	CCTAGG	1 cut(s)	137
BlpI	GCTNAGC	1 cut(s)	17
BlsI	GCNGC	6 cut(s)	166, 188, 302, 972, 1288, 1291
Bme1390I	CCNGG	2 cut(s)	268, 1272
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	371
BmgT120I	GGNCC	2 cut(s)	142, 229
BmiI	GGNNCC	4 cut(s)	143, 216, 265, 1269
BmrFI	CCNGG	2 cut(s)	268, 1272
BmsI	GCATC	4 cut(s)	804, 1012, 1174, 1589
BpiI	GAAGAC	3 cut(s)	444, 1057, 1211
Bpu10I	CCTNAGC	1 cut(s)	471
Bpu1102I	GCTNAGC	1 cut(s)	17
Bpu14I	TTCGAA	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	1190
BsaHI	GRCGYC	2 cut(s)	215, 246
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	137, 258, 267
BsaWI	WCCGGW	4 cut(s)	197, 364, 769, 1125
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	7 cut(s)	259, 260, 283, 1166, 1232, 1311, 1510
Bse118I	RCCGGY	4 cut(s)	182, 197, 217, 1125
Bse1I	ACTGG	3 cut(s)	604, 1060, 1573
Bse21I	CCTNAGG	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	268, 1272
BseDI	CCNNGG	3 cut(s)	137, 258, 267
BseGI	GGATG	3 cut(s)	108, 712, 1580
BseLI	CCNNNNNNNGG	7 cut(s)	259, 260, 283, 1166, 1232, 1311, 1510
BseMII	CTCAG	5 cut(s)	31, 112, 462, 624, 1324
BseNI	ACTGG	3 cut(s)	604, 1060, 1573
BseRI	GAGGAG	3 cut(s)	365, 422, 1098
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	4 cut(s)	312, 982, 1276, 1298
Bsh1236I	CGCG	2 cut(s)	93, 334
Bsh1285I	CGRYCG	1 cut(s)	193
BshFI	GGCC	4 cut(s)	144, 469, 1041, 1236
BshNI	GGYRCC	2 cut(s)	214, 263
BshTI	ACCGGT	2 cut(s)	197, 1125
BsiEI	CGRYCG	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	372, 1264
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	7 cut(s)	183, 198, 212, 218, 365, 770, 1126
BslFI	GGGAC	2 cut(s)	284, 597
BslI	CCNNNNNNNGG	7 cut(s)	259, 260, 283, 1166, 1232, 1311, 1510
BsmAI	GTCTC	3 cut(s)	213, 411, 748
BsmBI	CGTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	284, 597
BsnI	GGCC	4 cut(s)	144, 469, 1041, 1236
Bso31I	GGTCTC	1 cut(s)	411
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	3 cut(s)	266, 372, 1264
Bsp143I	GATC	3 cut(s)	961, 1267, 1404
Bsp1720I	GCTNAGC	1 cut(s)	17
BspACI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
BspANI	GGCC	4 cut(s)	144, 469, 1041, 1236
BspCNI	CTCAG	5 cut(s)	30, 111, 463, 625, 1323
BspFNI	CGCG	2 cut(s)	93, 334
BspHI	TCATGA	1 cut(s)	1600
BspLI	GGNNCC	4 cut(s)	143, 216, 265, 1269
BspMAI	CTGCAG	1 cut(s)	237
BspMI	ACCTGC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	1262, 1275
BspQI	GCTCTTC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	435
BspT107I	GGYRCC	2 cut(s)	214, 263
BspTNI	GGTCTC	1 cut(s)	411
BsrFI	RCCGGY	4 cut(s)	182, 197, 217, 1125
BsrI	ACTGG	3 cut(s)	604, 1060, 1573
BssAI	RCCGGY	4 cut(s)	182, 197, 217, 1125
BssECI	CCNNGG	3 cut(s)	137, 258, 267
BssMI	GATC	3 cut(s)	961, 1267, 1404
BssNI	GRCGYC	2 cut(s)	215, 246
BssT1I	CCWWGG	2 cut(s)	137, 258
Bst2UI	CCWGG	2 cut(s)	268, 1272
Bst4CI	ACNGT	1 cut(s)	1297
Bst6I	CTCTTC	2 cut(s)	314, 921
BstACI	GRCGYC	2 cut(s)	215, 246
BstAPI	GCANNNNNTGC	3 cut(s)	792, 889, 1298
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	6 cut(s)	14, 184, 305, 1098, 1238, 1377
BstDEI	CTNAG	6 cut(s)	17, 98, 471, 633, 1310, 1527
BstENI	CCTNNNNNAGG	1 cut(s)	1508
BstF5I	GGATG	3 cut(s)	108, 712, 1580
BstFNI	CGCG	2 cut(s)	93, 334
BstH2I	RGCGCY	2 cut(s)	218, 565
BstHHI	GCGC	4 cut(s)	95, 217, 294, 564
BstKTI	GATC	3 cut(s)	964, 1270, 1407
BstMAI	GTCTC	3 cut(s)	213, 411, 748
BstMBI	GATC	3 cut(s)	961, 1267, 1404
BstMCI	CGRYCG	1 cut(s)	193
BstMWI	GCNNNNNNNGC	7 cut(s)	18, 300, 559, 595, 792, 889, 1298
BstNI	CCWGG	2 cut(s)	268, 1272
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	2 cut(s)	266, 1270
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	2 cut(s)	93, 334
BstV1I	GCAGC	4 cut(s)	312, 982, 1276, 1298
BstV2I	GAAGAC	3 cut(s)	444, 1057, 1211
BstX2I	RGATCY	1 cut(s)	1267
BstXI	CCANNNNNNTGG	2 cut(s)	537, 1362
BstYI	RGATCY	1 cut(s)	1267
Bsu36I	CCTNAGG	1 cut(s)	633
BsuRI	GGCC	4 cut(s)	144, 469, 1041, 1236
BtgZI	GCGATG	1 cut(s)	1164
BtsCI	GGATG	3 cut(s)	108, 712, 1580
BtsI	GCAGTG	2 cut(s)	552, 560
BtsIMutI	CAGTG	4 cut(s)	552, 560, 611, 1580
BveI	ACCTGC	1 cut(s)	240
Cac8I	GCNNGC	6 cut(s)	14, 184, 305, 1098, 1238, 1377
CaiI	CAGNNNCTG	1 cut(s)	959
CciI	TCATGA	1 cut(s)	1600
CfoI	GCGC	4 cut(s)	95, 217, 294, 564
Cfr10I	RCCGGY	4 cut(s)	182, 197, 217, 1125
Cfr13I	GGNCC	2 cut(s)	142, 229
Csp6I	GTAC	2 cut(s)	195, 629
CspAI	ACCGGT	2 cut(s)	197, 1125
CviAII	CATG	3 cut(s)	40, 289, 1601
CviQI	GTAC	2 cut(s)	195, 629
DdeI	CTNAG	6 cut(s)	17, 98, 471, 633, 1310, 1527
DinI	GGCGCC	1 cut(s)	216
DpnI	GATC	3 cut(s)	963, 1269, 1406
DpnII	GATC	3 cut(s)	961, 1267, 1404
Eam1104I	CTCTTC	2 cut(s)	314, 921
EarI	CTCTTC	2 cut(s)	314, 921
Eco130I	CCWWGG	2 cut(s)	137, 258
Eco147I	AGGCCT	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	2 cut(s)	666, 986
Eco81I	CCTNAGG	1 cut(s)	633
Eco88I	CYCGRG	1 cut(s)	371
EcoNI	CCTNNNNNAGG	1 cut(s)	1508
EcoO109I	RGGNCCY	2 cut(s)	142, 229
EcoRII	CCWGG	2 cut(s)	266, 1270
EcoT14I	CCWWGG	2 cut(s)	137, 258
EgeI	GGCGCC	1 cut(s)	216
EheI	GGCGCC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	137, 258
Esp3I	CGTCTC	1 cut(s)	748
FaeI	CATG	3 cut(s)	43, 292, 1604
FalI	AAGNNNNNCTT	5 cut(s)	37, 639, 671, 918, 950
FaqI	GGGAC	2 cut(s)	284, 597
FatI	CATG	3 cut(s)	39, 288, 1600
FauI	CCCGC	2 cut(s)	98, 285
FblI	GTMKAC	1 cut(s)	1460
Fnu4HI	GCNGC	6 cut(s)	165, 187, 301, 971, 1287, 1290
FokI	GGATG	3 cut(s)	95, 719, 1567
Fsp4HI	GCNGC	6 cut(s)	165, 187, 301, 971, 1287, 1290
FspBI	CTAG	2 cut(s)	138, 726
GlaI	GCGC	4 cut(s)	94, 216, 293, 563
GluI	GCNGC	6 cut(s)	165, 187, 301, 971, 1287, 1290
HaeII	RGCGCY	2 cut(s)	218, 565
HaeIII	GGCC	4 cut(s)	144, 469, 1041, 1236
HapII	CCGG	7 cut(s)	183, 198, 212, 218, 365, 770, 1126
HhaI	GCGC	4 cut(s)	95, 217, 294, 564
Hin1I	GRCGYC	2 cut(s)	215, 246
Hin1II	CATG	3 cut(s)	43, 292, 1604
Hin6I	GCGC	4 cut(s)	93, 215, 292, 562
HinP1I	GCGC	4 cut(s)	93, 215, 292, 562
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HindIII	AAGCTT	2 cut(s)	774, 818
HinfI	GANTC	9 cut(s)	102, 374, 412, 851, 941, 1012, 1418, 1466, 1517
HpaII	CCGG	7 cut(s)	183, 198, 212, 218, 365, 770, 1126
HphI	GGTGA	1 cut(s)	1193
Hpy166II	GTNNAC	6 cut(s)	250, 629, 988, 1115, 1461, 1588
Hpy188I	TCNGA	9 cut(s)	101, 323, 379, 706, 966, 1006, 1423, 1471, 1636
Hpy188III	TCNNGA	5 cut(s)	416, 1265, 1383, 1521, 1601
Hpy8I	GTNNAC	6 cut(s)	250, 629, 988, 1115, 1461, 1588
Hpy99I	CGWCG	1 cut(s)	456
HpyAV	CCTTC	3 cut(s)	492, 536, 1207
HpyCH4III	ACNGT	1 cut(s)	1297
HpyCH4IV	ACGT	3 cut(s)	246, 757, 1488
HpyF10VI	GCNNNNNNNGC	7 cut(s)	18, 300, 559, 595, 792, 889, 1298
HpyF3I	CTNAG	6 cut(s)	17, 98, 471, 633, 1310, 1527
HpySE526I	ACGT	3 cut(s)	246, 757, 1488
Hsp92I	GRCGYC	2 cut(s)	215, 246
Hsp92II	CATG	3 cut(s)	43, 292, 1604
HspAI	GCGC	4 cut(s)	93, 215, 292, 562
KasI	GGCGCC	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	182
KroNI	GCCGGC	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	961, 1267, 1404
LguI	GCTCTTC	1 cut(s)	314
LmnI	GCTCC	2 cut(s)	595, 1283
Lsp1109I	GCAGC	4 cut(s)	312, 982, 1276, 1298
LweI	GCATC	4 cut(s)	804, 1012, 1174, 1589
MaeI	CTAG	2 cut(s)	138, 726
MaeII	ACGT	3 cut(s)	246, 757, 1488
MaeIII	GTNAC	4 cut(s)	220, 637, 670, 758
MalI	GATC	3 cut(s)	963, 1269, 1406
MboI	GATC	3 cut(s)	961, 1267, 1404
MfeI	CAATTG	2 cut(s)	666, 876
MflI	RGATCY	1 cut(s)	1267
MhlI	GDGCHC	3 cut(s)	266, 372, 1264
MluCI	AATT	9 cut(s)	51, 316, 666, 693, 876, 992, 1199, 1452, 1498
Mly113I	GGCGCC	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	383, 1460
MmeI	TCCRAC	3 cut(s)	357, 691, 903
MroNI	GCCGGC	1 cut(s)	182
MroXI	GAANNNNTTC	1 cut(s)	1011
MseI	TTAA	4 cut(s)	23, 86, 533, 717
MslI	CAYNNNNRTG	3 cut(s)	38, 535, 1360
MspA1I	CMGCKG	4 cut(s)	303, 424, 973, 1289
MspI	CCGG	7 cut(s)	183, 198, 212, 218, 365, 770, 1126
MspR9I	CCNGG	2 cut(s)	268, 1272
MunI	CAATTG	2 cut(s)	666, 876
MvaI	CCWGG	2 cut(s)	268, 1272
MvnI	CGCG	2 cut(s)	93, 334
MwoI	GCNNNNNNNGC	7 cut(s)	18, 300, 559, 595, 792, 889, 1298
NaeI	GCCGGC	1 cut(s)	184
NarI	GGCGCC	1 cut(s)	215
NdeII	GATC	3 cut(s)	961, 1267, 1404
NgoMIV	GCCGGC	1 cut(s)	182
NlaIII	CATG	3 cut(s)	43, 292, 1604
NlaIV	GGNNCC	4 cut(s)	143, 216, 265, 1269
NmeAIII	GCCGAG	1 cut(s)	1212
NmuCI	GTSAC	2 cut(s)	220, 670
NspI	RCATGY	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	435
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	1600
PceI	AGGCCT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	314
PdiI	GCCGGC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	1011
PfeI	GAWTC	7 cut(s)	102, 412, 851, 941, 1012, 1418, 1517
PfoI	TCCNGGA	1 cut(s)	1270
PinAI	ACCGGT	2 cut(s)	197, 1125
PkrI	GCNGC	6 cut(s)	166, 188, 302, 972, 1288, 1291
PleI	GAGTC	2 cut(s)	382, 1460
PluTI	GGCGCC	1 cut(s)	218
PpsI	GAGTC	2 cut(s)	382, 1460
PpuMI	RGGWCCY	1 cut(s)	229
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	266, 1270
PspGI	CCWGG	2 cut(s)	266, 1270
PspN4I	GGNNCC	4 cut(s)	143, 216, 265, 1269
PspPI	GGNCC	2 cut(s)	142, 229
PspPPI	RGGWCCY	1 cut(s)	229
PspXI	VCTCGAGB	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	1267
PvuII	CAGCTG	4 cut(s)	303, 424, 973, 1289
RsaI	GTAC	2 cut(s)	196, 630
RsaNI	GTAC	2 cut(s)	195, 629
RseI	CAYNNNNRTG	3 cut(s)	38, 535, 1360
SapI	GCTCTTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	23, 86, 533, 717
SatI	GCNGC	6 cut(s)	165, 187, 301, 971, 1287, 1290
Sau3AI	GATC	3 cut(s)	961, 1267, 1404
Sau96I	GGNCC	2 cut(s)	142, 229
SchI	GAGTC	2 cut(s)	383, 1460
ScrFI	CCNGG	2 cut(s)	268, 1272
SduI	GDGCHC	3 cut(s)	266, 372, 1264
SfaNI	GCATC	4 cut(s)	804, 1012, 1174, 1589
SfcI	CTRYAG	1 cut(s)	233
SfoI	GGCGCC	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	1 cut(s)	229
SlaI	CTCGAG	1 cut(s)	371
SmiMI	CAYNNNNRTG	3 cut(s)	38, 535, 1360
SmlI	CTYRAG	2 cut(s)	371, 1205
SmoI	CTYRAG	2 cut(s)	371, 1205
Sse9I	AATT	9 cut(s)	51, 316, 666, 693, 876, 992, 1199, 1452, 1498
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	8 cut(s)	91, 162, 165, 186, 189, 278, 298, 334
SspDI	GGCGCC	1 cut(s)	214
SspMI	CTAG	2 cut(s)	138, 726
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	2 cut(s)	266, 1270
StyI	CCWWGG	2 cut(s)	137, 258
TaaI	ACNGT	1 cut(s)	1297
TaiI	ACGT	3 cut(s)	249, 760, 1491
TaqI	TCGA	7 cut(s)	348, 372, 415, 435, 730, 1020, 1068
TasI	AATT	9 cut(s)	51, 316, 666, 693, 876, 992, 1199, 1452, 1498
TauI	GCSGC	2 cut(s)	167, 189
TfiI	GAWTC	7 cut(s)	102, 412, 851, 941, 1012, 1418, 1517
Tru1I	TTAA	4 cut(s)	23, 86, 533, 717
Tru9I	TTAA	4 cut(s)	23, 86, 533, 717
TscAI	CASTG	4 cut(s)	552, 560, 611, 1580
TseFI	GTSAC	2 cut(s)	220, 670
TseI	GCWGC	4 cut(s)	300, 970, 1286, 1289
Tsp45I	GTSAC	2 cut(s)	220, 670
TspDTI	ATGAA	2 cut(s)	1617, 1632
TspGWI	ACGGA	3 cut(s)	239, 892, 1573
TspRI	CASTG	4 cut(s)	552, 560, 611, 1580
VpaK11BI	GGWCC	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	1508
XapI	RAATTY	3 cut(s)	992, 1452, 1498
XceI	RCATGY	1 cut(s)	292
XhoI	CTCGAG	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	137
XmiI	GTMKAC	1 cut(s)	1460
XmnI	GAANNNNTTC	1 cut(s)	1011
XspI	CTAG	2 cut(s)	138, 726
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.