MD12G1185100.v1.1

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015901
Physical Location & Seq
Reverse (-)
26600235 .. 26600516
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1185100.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTGTCCGCTGAGGTTCATACTCATCTTCTTGTCCGCCGCGCTCGCCGCATTCTTCGCTTTGAGGAACCTCGAAAACTTGTTCCAAGATTCTACTACTTGTGCTGACCATCACCAGGAACTGCTCAGTTCGCTCAAAGGTCAATCGGCATCCCCTTCCTTGTCTTCCAAGGTTGCATCTGCTGCCGGAAAGGGTTTTTGGACGTTCGTTGACATGGCAAGCGGACACTACCTTTGGAGGACTTTGGTTTCATCATCTTCTTCTTCTTCTTACACAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.04

Weight (kDa)

7.85

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14602 AT5G18150
malus_domestica MD12G1003700.v1.1 MD12G1185100.v1.1 MD14G1002600.v1.1
prunus_persica Prupe.6G290500_v2.0.a1 Prupe.7G004200_v2.0.a1
pyrus_communis pycom14g00030
rosa_chinensis RchiOBHm_Chr3g0460941
rosa_roxburghii Rroxscaffold_6G00419020
rosa_rugosa Rorug03G0047100
rosa_samantha Rh3BG108400 Rh3DG110200
rosa_wichuraiana Rw3G008910 Rw5G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 41
AciI CCGC 5 cut(s) 8, 36, 39, 48, 222
AfiI CCNNNNNNNGG 1 cut(s) 115
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
AlwNI CAGNNNCTG 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 216, 248
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 104
BbsI GAAGAC 1 cut(s) 156
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 116
BisI GCNGC 3 cut(s) 39, 48, 183
BlsI GCNGC 3 cut(s) 40, 49, 184
Bme1390I CCNGG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 158, 185
BpiI GAAGAC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 168
Bsc4I CCNNNNNNNGG 1 cut(s) 115
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 169
Bsh1236I CGCG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 1 cut(s) 115
BsmI GAATGC 1 cut(s) 50
BspACI CCGC 5 cut(s) 8, 36, 39, 48, 222
BspCNI CTCAG 1 cut(s) 138
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 116
BstAPI GCANNNNNTGC 1 cut(s) 182
BstC8I GCNNGC 2 cut(s) 45, 220
BstDEI CTNAG 2 cut(s) 11, 125
BstF5I GGATG 1 cut(s) 149
BstFNI CGCG 1 cut(s) 41
BstHHI GCGC 1 cut(s) 43
BstMWI GCNNNNNNNGC 5 cut(s) 44, 47, 56, 130, 182
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 2 cut(s) 45, 220
CaiI CAGNNNCTG 1 cut(s) 121
CfoI GCGC 1 cut(s) 43
CviAII CATG 1 cut(s) 214
CviJI RGCY 1 cut(s) 278
CviKI_1 RGCY 1 cut(s) 278
DdeI CTNAG 2 cut(s) 11, 125
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaeI CATG 1 cut(s) 217
FaiI YATR 2 cut(s) 20, 215
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 39, 48, 183
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 3 cut(s) 39, 48, 183
GlaI GCGC 1 cut(s) 42
GluI GCNGC 3 cut(s) 39, 48, 183
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 43
Hin1II CATG 1 cut(s) 217
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 186
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 211
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 1 cut(s) 176
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 47, 56, 130, 182
HpyF3I CTNAG 2 cut(s) 11, 125
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 1 cut(s) 217
HspAI GCGC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 101, 128, 199
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 2 cut(s) 158, 185
MaeII ACGT 1 cut(s) 203
MboII GAAGA 7 cut(s) 19, 46, 156, 249, 252, 255, 258
MnlI CCTC 4 cut(s) 6, 57, 80, 231
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 5 cut(s) 44, 47, 56, 130, 182
NlaIII CATG 1 cut(s) 217
NlaIV GGNNCC 1 cut(s) 68
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 40, 49, 184
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 68
PstNI CAGNNNCTG 1 cut(s) 121
SatI GCNGC 3 cut(s) 39, 48, 183
ScrFI CCNGG 1 cut(s) 116
SetI ASST 7 cut(s) 17, 72, 142, 174, 206, 234, 280
SfaNI GCATC 2 cut(s) 158, 185
SsiI CCGC 5 cut(s) 8, 36, 39, 48, 222
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 168
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 72
TauI GCSGC 2 cut(s) 41, 50
TfiI GAWTC 1 cut(s) 89
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 7, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.