MD14G1002600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0015901
Physical Location & Seq
Forward (+)
384201 .. 384953
753 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1002600.v1.1.491

Sequence Viewer

Length: 285 bp
ATGTGTCCTCTAAGGTTCATCTTGTTGTTCTTCTCAGCAATCCTTGCAGGATACTTTGCATGGAGGACGGTTCATTCTTCTCCCTCCGGAACCGACATCATAACCTCCTCACAGCTTGATTCTACCAACATTAATGAAAATATGGGATCATCCAAACATGAACAAGAAGCATTCAATTTTAAATTTATGATTCAGAATGGCTTCTGGGTATTTGTGGACATGGCCAGCGGGAAATACTTGTGGAGGAATTTTAAGGAGATGAATGAAGGCAAAGTAAAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.84

Weight (kDa)

7.8

Isoelectric Point (pI)

32.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14602 AT5G18150
malus_domestica MD12G1003700.v1.1 MD12G1185100.v1.1 MD14G1002600.v1.1
prunus_persica Prupe.6G290500_v2.0.a1 Prupe.7G004200_v2.0.a1
pyrus_communis pycom14g00030
rosa_chinensis RchiOBHm_Chr3g0460941
rosa_roxburghii Rroxscaffold_6G00419020
rosa_rugosa Rorug03G0047100
rosa_samantha Rh3BG108400 Rh3DG110200
rosa_wichuraiana Rw3G008910 Rw5G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 86
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 2 cut(s) 182, 247
AgsI TTSAA 1 cut(s) 175
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
AlwI GGATC 1 cut(s) 154
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 1 cut(s) 222
ApoI RAATTY 2 cut(s) 182, 247
AseI ATTAAT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 200
BalI TGGCCA 1 cut(s) 224
BciVI GTATCC 1 cut(s) 44
BfuI GTATCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 86
BseAI TCCGGA 1 cut(s) 86
BseGI GGATG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 97
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 87
BsmI GAATGC 1 cut(s) 170
BsnI GGCC 1 cut(s) 224
Bsp13I TCCGGA 1 cut(s) 86
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 1 cut(s) 47
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 154
BssMI GATC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 70
BstAPI GCANNNNNTGC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 11, 34
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 1 cut(s) 44
BsuI GTATCC 1 cut(s) 44
BsuRI GGCC 1 cut(s) 224
BtsCI GGATG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 226
CviAII CATG 3 cut(s) 60, 158, 220
CviJI RGCY 3 cut(s) 115, 201, 224
CviKI_1 RGCY 3 cut(s) 115, 201, 224
DdeI CTNAG 2 cut(s) 11, 34
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
DraI TTTAAA 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 222
FaeI CATG 3 cut(s) 63, 161, 223
FaiI YATR 6 cut(s) 61, 101, 143, 159, 188, 221
FatI CATG 3 cut(s) 59, 157, 219
FauI CCCGC 1 cut(s) 221
FokI GGATG 1 cut(s) 136
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 87
Hin1II CATG 3 cut(s) 63, 161, 223
HinfI GANTC 2 cut(s) 119, 190
HpaII CCGG 1 cut(s) 87
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 87
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 47, 59
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 11, 34
Hsp92II CATG 3 cut(s) 63, 161, 223
Kpn2I TCCGGA 1 cut(s) 86
Kzo9I GATC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 33, 100, 190, 238
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 22, 69
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 3 cut(s) 175, 182, 247
MluNI TGGCCA 1 cut(s) 224
MnlI CCTC 6 cut(s) 18, 57, 94, 115, 118, 237
Mox20I TGGCCA 1 cut(s) 224
MroI TCCGGA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 224
MseI TTAA 3 cut(s) 132, 180, 252
Msp20I TGGCCA 1 cut(s) 224
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 170
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 1 cut(s) 146
NlaIII CATG 3 cut(s) 63, 161, 223
NlaIV GGNNCC 1 cut(s) 91
PctI GAATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 119, 190
PshBI ATTAAT 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 91
SaqAI TTAA 3 cut(s) 132, 180, 252
Sau3AI GATC 1 cut(s) 146
SetI ASST 3 cut(s) 17, 107, 117
Sse9I AATT 3 cut(s) 175, 182, 247
SsiI CCGC 1 cut(s) 228
TaaI ACNGT 1 cut(s) 70
TasI AATT 3 cut(s) 175, 182, 247
TfiI GAWTC 2 cut(s) 119, 190
Tru1I TTAA 3 cut(s) 132, 180, 252
Tru9I TTAA 3 cut(s) 132, 180, 252
TspDTI ATGAA 6 cut(s) 7, 62, 150, 174, 275, 279
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 2 cut(s) 182, 247
XmnI GAANNNNTTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.