Rw5G044920

expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015901
Physical Location & Seq
Forward (+)
78666384 .. 78669904
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044920.1

Sequence Viewer

Length: 258 bp
ATGTGCCCTCTCAGATTCATCCTCGTCTTCCTCTCCGCCACTCTCGCCGGCTTCTTCCTCCTCAGAAACTTCAAATCCGATTTCAATCTTTGGTTCTGGACCTTTGTGGACATGGCCAGTGGACGGTACCTATGGAGGCATTTGGTCACGTCTTCCGCAAACTTATGTGGCTTAGTTGTGCTGGACTTCATAGGCAGCATCTTCATTGTTGAAATGTTGTGCAATACCCAAAACACTCCCTTATTGGACAGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.77

Weight (kDa)

6.51

Isoelectric Point (pI)

21.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015901)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G14602 AT5G18150
malus_domestica MD12G1003700.v1.1 MD12G1185100.v1.1 MD14G1002600.v1.1
prunus_persica Prupe.6G290500_v2.0.a1 Prupe.7G004200_v2.0.a1
pyrus_communis pycom14g00030
rosa_chinensis RchiOBHm_Chr3g0460941
rosa_roxburghii Rroxscaffold_6G00419020
rosa_rugosa Rorug03G0047100
rosa_samantha Rh3BG108400 Rh3DG110200
rosa_wichuraiana Rw3G008910 Rw5G044920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 126
AccB1I GGYRCC 1 cut(s) 126
AciI CCGC 2 cut(s) 36, 156
AcoI YGGCCR 1 cut(s) 114
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 3 cut(s) 73, 85, 212
AjiI CACGTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 195
Asp718I GGTACC 1 cut(s) 126
AspS9I GGNCC 1 cut(s) 99
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 19, 144
BbvI GCAGC 1 cut(s) 207
BisI GCNGC 1 cut(s) 196
BlsI GCNGC 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 128
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 2 cut(s) 19, 144
BsaBI GATNNNNATC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 84
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 2 cut(s) 25, 76
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 207
BshFI GGCC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 126
BsiSI CCGG 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 2 cut(s) 36, 156
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 24, 75
BspLI GGNNCC 1 cut(s) 128
BspT107I GGYRCC 1 cut(s) 126
BsrFI RCCGGY 1 cut(s) 47
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 126, 251
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 11, 62, 172
BstF5I GGATG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 207
BstV2I GAAGAC 2 cut(s) 19, 144
BsuRI GGCC 1 cut(s) 116
BtrI CACGTC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 127
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 51, 116, 171
CviKI_1 RGCY 3 cut(s) 51, 116, 171
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 3 cut(s) 11, 62, 172
EaeI YGGCCR 1 cut(s) 114
EciI GGCGGA 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 99
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 113, 133, 166, 191
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 1 cut(s) 5
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 116
HapII CCGG 1 cut(s) 48
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 15
HpaII CCGG 1 cut(s) 48
Hpy166II GTNNAC 2 cut(s) 109, 122
Hpy188I TCNGA 3 cut(s) 14, 65, 79
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 2 cut(s) 109, 122
HpyCH4III ACNGT 2 cut(s) 126, 251
HpyCH4IV ACGT 1 cut(s) 149
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 3 cut(s) 11, 62, 172
HpySE526I ACGT 1 cut(s) 149
Hsp92II CATG 1 cut(s) 115
KpnI GGTACC 1 cut(s) 130
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
LpnPI CCDG 4 cut(s) 61, 82, 130, 167
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 207
MaeII ACGT 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 4 cut(s) 19, 46, 144, 193
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 116
MnlI CCTC 6 cut(s) 18, 32, 41, 68, 71, 129
Mox20I TGGCCA 1 cut(s) 116
MroNI GCCGGC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 116
Msp20I TGGCCA 1 cut(s) 116
MspI CCGG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 44
NaeI GCCGGC 1 cut(s) 49
NgoMIV GCCGGC 1 cut(s) 47
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 145
PdiI GCCGGC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 99
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SatI GCNGC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 99
SduI GDGCHC 1 cut(s) 8
SetI ASST 3 cut(s) 104, 132, 152
SfaNI GCATC 1 cut(s) 207
SgeI CNNG 8 cut(s) 35, 56, 60, 109, 124, 129, 160, 194
SinI GGWCC 1 cut(s) 99
Sse9I AATT 1 cut(s) 253
SsiI CCGC 2 cut(s) 36, 156
TaaI ACNGT 2 cut(s) 126, 251
TaiI ACGT 1 cut(s) 152
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 15
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 1 cut(s) 145
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 3 cut(s) 7, 178, 193
TspRI CASTG 1 cut(s) 124
VpaK11BI GGWCC 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.