MD12G1244000.v1.1

Poly(RC)-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
31456231 .. 31461644
5414 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1244000.v1.1.491

Sequence Viewer

Length: 1713 bp
ATGGGTTTCGATTCGGAGTATTTTCTTCATTTGGGTTTACAATTTATGGCTGAAGCTGATAAACTCTATGGGGAACTTGATGGAGGTGAAGTACCTGTGACCGTGGCTGAAATCAATGCCGAGATTGAGAATGCAGAGCCGCTGGTAGATGACCAGGCTACGGCACTAGACCCGGCTTCGGAGCTGACAGAGGCCGATGTACAGGGGTATGAACAAGAGCATGGAGTGACATTTGCACAAGAACAAGAAGATGCACTTGCCCAGTTCCGGGCACAGGAGCAGGAAGAGGCACTGGCCCAGTTCCAGGCACAGGAGCAGGAAGAGGCACTGGCCCAGTTCCAGGCACAGGAGCAAGAAGAGGCACTGGCCCAGTTCCAGGCGCAGGAACAAGTAGAGTTATCGGTAGAAGTGCAAGAGGAGGAGGCGCAGTTATCCGAACAGAACCCAGAGCGTCACGAAGATGCTGCTGCCTTTGGTGGAGGTGAGAAGAAGTGGCCTGGATGGCCCGGAGAGAGTGTTTTCCGGATGCTGGTTCCTGCGCAGAAGGTTGGCAGTATAATTGGACGGAAAGGGGAGTTCATTAAGAAAATAGTTGAGGAGACGAGAGCTCGCATTAAAATTCTTGATGGACCCCCAGGAACGACTGAAAGAGCCGTAATGGTTTCTGGTAAGGAGGAGCCTGATTCTTCTCTTCCCCCTGCAATGGATGGCCTTTTGAGGGTTCACACGCGTATTATTGATGGTTTGGATGGTGATTCATCTCATGCTCCACCGGGCATGGGTGGCAAAGTCTCTACAAAGCTGCTGGTTGCAGCTTCACAGGCAGGAAGCTTGATTGGGAAACAGGGAGGAACTGTTAAATCCATTCAAGAAGCATCTAACTGCATAGTTAGAGTTCTTGGATCAGAAGACCTACCGATTTTTGCTCTTCAAGATGACAGAGTGGTTGAAGTAGTGGGTGAAGCTGTTGGTGTGCACAAAGCAATTGAACTAATTGCATCTCATCTTAGGAAGTTTTTAGTTGACCGCAGTATAATTCCAATATTTGAAATGCATATGCAAATGGCAAATCCTCAGATGGAACATGGGCCACCTCATCAAAATTGGGGTCCACCTCAAGGTCATCCCCACAATGCTGGTCATGGGGGTCCTGGATTTGGGCCGCCTAATCCCCAATACATGCCACCTCCTCGGCAACATGACAATTACTATCCACCAGCTGACATGCCTCCACCAATGGAGAAACAGCCTCACCATGGTATATCGGCTTATGGAAGAGAAGCTCCAATGGGTGTCCACCAGTCATCAAATACTCAGTCCGCACCAGGAATGGTAACACAGATCACCAAGCAATTGCAAATTCCGCTGTCATATGCTGATGCTGTTATTGGCACAGCTGGTGCAAGTATAAGCTATATTCGACGAGCTAGTGGGGCAACTGTTACGATACAAGAGACTAGGGGTGTTCCTGGGGAGATGACTGTTGAAATCAGTGGAAGTGCTCCCGAAGTTCAAGCAGCTCAACAACTGATACAGAATTTCATGGCAGATGCTGGAGCACCGCAGCCGACACCAACTCCTGGCTCTGTGGACCAAGGTTATAACAACTATGCCACTCACGGTTCAGTTTATGCATCTCCCCCATCTAATCAAGGACACGCAGGACAACACGGCGGCTATGGCTCAGTCTATGGCTCGCATTATGGGTACTAG

Protein Analysis

571

Amino Acids

61.24

Weight (kDa)

4.74

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 174 - 226 1.6e-14 KH domain
KH_1 PF00013 266 - 333 4.6e-14 KH domain
KH_1 PF00013 449 - 512 6.5e-12 KH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1602
Acc16I TGCGCA 1 cut(s) 540
AccB7I CCANNNNNTGG 1 cut(s) 1580
AccII CGCG 1 cut(s) 730
AccIII TCCGGA 1 cut(s) 522
AciI CCGC 7 cut(s) 140, 1027, 1163, 1320, 1364, 1562, 1674
AclWI GGATC 1 cut(s) 910
AcsI RAATTY 3 cut(s) 618, 1359, 1537
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 3 cut(s) 93, 201, 1709
AflIII ACRYGT 1 cut(s) 728
AgsI TTSAA 7 cut(s) 869, 932, 950, 989, 1049, 1487, 1514
Alw21I GWGCWC 4 cut(s) 610, 978, 1504, 1561
Alw26I GTCTC 3 cut(s) 593, 796, 1448
Alw44I GTGCAC 1 cut(s) 974
AlwI GGATC 1 cut(s) 910
AlwNI CAGNNNCTG 1 cut(s) 1553
Aor13HI TCCGGA 1 cut(s) 522
AoxI GGCC 9 cut(s) 192, 294, 330, 366, 494, 503, 709, 1088, 1160
ApaLI GTGCAC 1 cut(s) 974
ApeKI GCWGC 6 cut(s) 464, 467, 802, 812, 1517, 1564
ApoI RAATTY 3 cut(s) 618, 1359, 1537
ArsI GACNNNNNNTTYG 4 cut(s) 1093, 1125, 1301, 1333
AspLEI GCGC 3 cut(s) 382, 427, 541
AsuC2I CCSGG 4 cut(s) 173, 269, 507, 774
AsuHPI GGTGA 6 cut(s) 98, 494, 764, 971, 1244, 1336
AvaII GGWCC 4 cut(s) 629, 1109, 1148, 1591
BaeGI GKGCMC 2 cut(s) 274, 978
BanII GRGCYC 1 cut(s) 610
BbsI GAAGAC 1 cut(s) 915
Bbv12I GWGCWC 4 cut(s) 610, 978, 1504, 1561
BbvI GCAGC 6 cut(s) 451, 454, 789, 824, 1529, 1576
BccI CCATC 8 cut(s) 74, 495, 620, 701, 734, 743, 1072, 1651
BceAI ACGGC 3 cut(s) 177, 638, 1687
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BcnI CCSGG 4 cut(s) 173, 269, 507, 774
BcoDI GTCTC 3 cut(s) 593, 796, 1448
BfaI CTAG 4 cut(s) 167, 1428, 1458, 1711
BglI GCCNNNNNGGC 1 cut(s) 502
BisI GCNGC 9 cut(s) 140, 465, 468, 803, 813, 1163, 1518, 1565, 1675
BlsI GCNGC 9 cut(s) 141, 466, 469, 804, 814, 1164, 1519, 1566, 1676
Bme18I GGWCC 4 cut(s) 629, 1109, 1148, 1591
BmiI GGNNCC 5 cut(s) 534, 631, 678, 1110, 1149
BmrI ACTGGG 4 cut(s) 256, 292, 328, 364
BmsI GCATC 8 cut(s) 241, 451, 516, 884, 1007, 1369, 1540, 1643
BmuI ACTGGG 4 cut(s) 256, 292, 328, 364
BpiI GAAGAC 1 cut(s) 915
BpmI CTGGAG 1 cut(s) 1575
BpuEI CTTGAG 1 cut(s) 1101
BpuMI CCSGG 4 cut(s) 173, 269, 507, 774
BsaJI CCNNGG 6 cut(s) 102, 634, 1190, 1255, 1469, 1594
BsaWI WCCGGW 1 cut(s) 522
Bse1I ACTGG 8 cut(s) 262, 297, 298, 333, 334, 369, 370, 1300
Bse3DI GCAATG 1 cut(s) 708
BseAI TCCGGA 1 cut(s) 522
BseDI CCNNGG 6 cut(s) 102, 634, 1190, 1255, 1469, 1594
BseGI GGATG 5 cut(s) 506, 531, 712, 754, 1123
BseMI GCAATG 1 cut(s) 708
BseMII CTCAG 3 cut(s) 1088, 1328, 1698
BseNI ACTGG 8 cut(s) 262, 297, 298, 333, 334, 369, 370, 1300
BseRI GAGGAG 5 cut(s) 431, 434, 611, 689, 1179
BseSI GKGCMC 2 cut(s) 274, 978
BseXI GCAGC 6 cut(s) 451, 454, 789, 824, 1529, 1576
Bsh1236I CGCG 1 cut(s) 730
BshFI GGCC 9 cut(s) 194, 296, 332, 368, 496, 505, 711, 1090, 1162
BsiHKAI GWGCWC 4 cut(s) 610, 978, 1504, 1561
BsiSI CCGG 5 cut(s) 173, 268, 507, 523, 773
BsmAI GTCTC 3 cut(s) 593, 796, 1448
BsmBI CGTCTC 1 cut(s) 593
BsmI GAATGC 1 cut(s) 136
BsnI GGCC 9 cut(s) 194, 296, 332, 368, 496, 505, 711, 1090, 1162
Bsp1286I GDGCHC 5 cut(s) 274, 610, 978, 1504, 1561
Bsp13I TCCGGA 1 cut(s) 522
Bsp1407I TGTACA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 902, 1341
Bsp19I CCATGG 1 cut(s) 1255
BspACI CCGC 7 cut(s) 140, 1027, 1163, 1320, 1364, 1562, 1674
BspANI GGCC 9 cut(s) 194, 296, 332, 368, 496, 505, 711, 1090, 1162
BspCNI CTCAG 3 cut(s) 1087, 1327, 1697
BspEI TCCGGA 1 cut(s) 522
BspFNI CGCG 1 cut(s) 730
BspLI GGNNCC 5 cut(s) 534, 631, 678, 1110, 1149
BspPI GGATC 1 cut(s) 910
BspQI GCTCTTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 708
BsrGI TGTACA 1 cut(s) 199
BsrI ACTGG 8 cut(s) 262, 297, 298, 333, 334, 369, 370, 1300
BssECI CCNNGG 6 cut(s) 102, 634, 1190, 1255, 1469, 1594
BssMI GATC 2 cut(s) 902, 1341
BssT1I CCWWGG 2 cut(s) 1255, 1594
Bst4CI ACNGT 5 cut(s) 103, 856, 1441, 1483, 1622
Bst6I CTCTTC 6 cut(s) 279, 315, 351, 696, 933, 1270
BstAUI TGTACA 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 610, 1697
BstDEI CTNAG 4 cut(s) 1007, 1074, 1314, 1684
BstDSI CCRYGG 2 cut(s) 102, 1255
BstF5I GGATG 5 cut(s) 506, 531, 712, 754, 1123
BstFNI CGCG 1 cut(s) 730
BstHHI GCGC 3 cut(s) 382, 427, 541
BstKTI GATC 2 cut(s) 905, 1344
BstMAI GTCTC 3 cut(s) 593, 796, 1448
BstMBI GATC 2 cut(s) 902, 1341
BstMWI GCNNNNNNNGC 6 cut(s) 502, 783, 821, 1363, 1433, 1680
BstNSI RCATGY 2 cut(s) 1183, 1228
BstSLI GKGCMC 2 cut(s) 274, 978
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 6 cut(s) 451, 454, 789, 824, 1529, 1576
BstV2I GAAGAC 1 cut(s) 915
BstXI CCANNNNNNTGG 1 cut(s) 1136
BsuRI GGCC 9 cut(s) 194, 296, 332, 368, 496, 505, 711, 1090, 1162
BtgI CCRYGG 2 cut(s) 102, 1255
BtsCI GGATG 5 cut(s) 506, 531, 712, 754, 1123
BtsIMutI CAGTG 4 cut(s) 290, 326, 362, 1498
Cac8I GCNNGC 2 cut(s) 610, 1697
CaiI CAGNNNCTG 1 cut(s) 1553
CfoI GCGC 3 cut(s) 382, 427, 541
CseI GACGC 1 cut(s) 440
Csp6I GTAC 3 cut(s) 92, 200, 1708
CviQI GTAC 3 cut(s) 92, 200, 1708
DdeI CTNAG 4 cut(s) 1007, 1074, 1314, 1684
DpnI GATC 2 cut(s) 904, 1343
DpnII GATC 2 cut(s) 902, 1341
Eam1104I CTCTTC 6 cut(s) 279, 315, 351, 696, 933, 1270
EarI CTCTTC 6 cut(s) 279, 315, 351, 696, 933, 1270
Ecl136II GAGCTC 1 cut(s) 608
Eco130I CCWWGG 2 cut(s) 1255, 1594
Eco24I GRGCYC 1 cut(s) 610
Eco47I GGWCC 4 cut(s) 629, 1109, 1148, 1591
Eco53kI GAGCTC 1 cut(s) 608
Eco57I CTGAAG 1 cut(s) 72
EcoICRI GAGCTC 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 1148
EcoT14I CCWWGG 2 cut(s) 1255, 1594
EcoT22I ATGCAT 2 cut(s) 1056, 1636
EcoT38I GRGCYC 1 cut(s) 610
ErhI CCWWGG 2 cut(s) 1255, 1594
Esp3I CGTCTC 1 cut(s) 593
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FauNDI CATATG 2 cut(s) 1056, 1372
Fnu4HI GCNGC 9 cut(s) 140, 465, 468, 803, 813, 1163, 1518, 1565, 1675
FokI GGATG 5 cut(s) 513, 538, 719, 761, 1110
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 9 cut(s) 140, 465, 468, 803, 813, 1163, 1518, 1565, 1675
FspBI CTAG 4 cut(s) 167, 1428, 1458, 1711
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 3 cut(s) 381, 426, 540
GluI GCNGC 9 cut(s) 140, 465, 468, 803, 813, 1163, 1518, 1565, 1675
GsuI CTGGAG 1 cut(s) 1575
HaeIII GGCC 9 cut(s) 194, 296, 332, 368, 496, 505, 711, 1090, 1162
HapII CCGG 5 cut(s) 173, 268, 507, 523, 773
HgaI GACGC 1 cut(s) 440
HhaI GCGC 3 cut(s) 382, 427, 541
Hin6I GCGC 3 cut(s) 380, 425, 539
HinP1I GCGC 3 cut(s) 380, 425, 539
HincII GTYRAC 1 cut(s) 1024
HindII GTYRAC 1 cut(s) 1024
HindIII AAGCTT 1 cut(s) 829
HinfI GANTC 3 cut(s) 11, 683, 755
HpaII CCGG 5 cut(s) 173, 268, 507, 523, 773
HphI GGTGA 6 cut(s) 98, 494, 764, 971, 1244, 1336
Hpy166II GTNNAC 7 cut(s) 38, 724, 976, 1024, 1112, 1297, 1591
Hpy188I TCNGA 5 cut(s) 16, 181, 436, 907, 1077
Hpy188III TCNNGA 6 cut(s) 455, 523, 623, 869, 932, 1505
Hpy8I GTNNAC 7 cut(s) 38, 724, 976, 1024, 1112, 1297, 1591
Hpy99I CGWCG 1 cut(s) 1425
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 5 cut(s) 103, 856, 1441, 1483, 1622
HpyF10VI GCNNNNNNNGC 6 cut(s) 502, 783, 821, 1363, 1433, 1680
HpyF3I CTNAG 4 cut(s) 1007, 1074, 1314, 1684
HspAI GCGC 3 cut(s) 380, 425, 539
Kpn2I TCCGGA 1 cut(s) 522
Kzo9I GATC 2 cut(s) 902, 1341
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 9 cut(s) 181, 277, 313, 349, 676, 772, 1288, 1507, 1556
Lsp1109I GCAGC 6 cut(s) 451, 454, 789, 824, 1529, 1576
LweI GCATC 8 cut(s) 241, 451, 516, 884, 1007, 1369, 1540, 1643
MaeI CTAG 4 cut(s) 167, 1428, 1458, 1711
MaeIII GTNAC 5 cut(s) 97, 226, 452, 1333, 1441
MalI GATC 2 cut(s) 904, 1343
MboI GATC 2 cut(s) 902, 1341
MfeI CAATTG 2 cut(s) 984, 1352
MhlI GDGCHC 5 cut(s) 274, 610, 978, 1504, 1561
MluI ACGCGT 1 cut(s) 728
Mph1103I ATGCAT 2 cut(s) 1056, 1636
MroI TCCGGA 1 cut(s) 522
MseI TTAA 3 cut(s) 582, 615, 858
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 4 cut(s) 142, 1220, 1366, 1397
MspI CCGG 5 cut(s) 173, 268, 507, 523, 773
MunI CAATTG 2 cut(s) 984, 1352
Mva1269I GAATGC 1 cut(s) 136
MvnI CGCG 1 cut(s) 730
MwoI GCNNNNNNNGC 6 cut(s) 502, 783, 821, 1363, 1433, 1680
NciI CCSGG 4 cut(s) 173, 269, 507, 774
NcoI CCATGG 1 cut(s) 1255
NdeI CATATG 2 cut(s) 1056, 1372
NdeII GATC 2 cut(s) 902, 1341
NlaIV GGNNCC 5 cut(s) 534, 631, 678, 1110, 1149
NmeAIII GCCGAG 2 cut(s) 145, 1171
NmuCI GTSAC 3 cut(s) 97, 226, 452
NsbI TGCGCA 1 cut(s) 540
NsiI ATGCAT 2 cut(s) 1056, 1636
NspI RCATGY 2 cut(s) 1183, 1228
PciSI GCTCTTC 1 cut(s) 933
PctI GAATGC 1 cut(s) 136
PfeI GAWTC 3 cut(s) 11, 683, 755
PflMI CCANNNNNTGG 1 cut(s) 1580
PfoI TCCNGGA 1 cut(s) 1150
PkrI GCNGC 9 cut(s) 141, 466, 469, 804, 814, 1164, 1519, 1566, 1676
PpuMI RGGWCCY 1 cut(s) 1148
PsiI TTATAA 1 cut(s) 1602
Psp124BI GAGCTC 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 1148
PspN4I GGNNCC 5 cut(s) 534, 631, 678, 1110, 1149
PspPPI RGGWCCY 1 cut(s) 1148
PstNI CAGNNNCTG 1 cut(s) 1553
PvuII CAGCTG 2 cut(s) 1220, 1397
RsaI GTAC 3 cut(s) 93, 201, 1709
RsaNI GTAC 3 cut(s) 92, 200, 1708
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 610
SapI GCTCTTC 1 cut(s) 933
SaqAI TTAA 3 cut(s) 582, 615, 858
SatI GCNGC 9 cut(s) 140, 465, 468, 803, 813, 1163, 1518, 1565, 1675
Sau3AI GATC 2 cut(s) 902, 1341
SduI GDGCHC 5 cut(s) 274, 610, 978, 1504, 1561
SfaNI GCATC 8 cut(s) 241, 451, 516, 884, 1007, 1369, 1540, 1643
SfiI GGCCNNNNNGGCC 1 cut(s) 502
SinI GGWCC 4 cut(s) 629, 1109, 1148, 1591
SmiMI CAYNNNNRTG 1 cut(s) 459
SmlI CTYRAG 1 cut(s) 1116
SmoI CTYRAG 1 cut(s) 1116
SsiI CCGC 7 cut(s) 140, 1027, 1163, 1320, 1364, 1562, 1674
SspI AATATT 1 cut(s) 1044
SspMI CTAG 4 cut(s) 167, 1428, 1458, 1711
SstI GAGCTC 1 cut(s) 610
StyI CCWWGG 2 cut(s) 1255, 1594
TaaI ACNGT 5 cut(s) 103, 856, 1441, 1483, 1622
TaqI TCGA 2 cut(s) 9, 1420
TatI WGTACW 1 cut(s) 199
TauI GCSGC 3 cut(s) 142, 1165, 1677
TfiI GAWTC 3 cut(s) 11, 683, 755
Tru1I TTAA 3 cut(s) 582, 615, 858
Tru9I TTAA 3 cut(s) 582, 615, 858
TscAI CASTG 4 cut(s) 297, 333, 369, 1498
TseFI GTSAC 3 cut(s) 97, 226, 452
TseI GCWGC 6 cut(s) 464, 467, 802, 812, 1517, 1564
Tsp45I GTSAC 3 cut(s) 97, 226, 452
TspDTI ATGAA 5 cut(s) 17, 225, 568, 747, 1531
TspGWI ACGGA 1 cut(s) 580
TspRI CASTG 4 cut(s) 297, 333, 369, 1498
Van91I CCANNNNNTGG 1 cut(s) 1580
VneI GTGCAC 1 cut(s) 974
VpaK11BI GGWCC 4 cut(s) 629, 1109, 1148, 1591
XapI RAATTY 3 cut(s) 618, 1359, 1537
XceI RCATGY 2 cut(s) 1183, 1228
XspI CTAG 4 cut(s) 167, 1428, 1458, 1711
Zsp2I ATGCAT 2 cut(s) 1056, 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.