Prupe.6G345700_v2.0.a1

Poly(RC)-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
29655467 .. 29660572
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G345700.1

Sequence Viewer

Length: 1716 bp
ATGGCTGAAGTTGATAAACTCTTTGGTGAACATGATGGAGAGGAAGTACCTGAGAATGTGACTGAAATTGAGGCTGAGACTGAGGACGTACAGCCACAGGAACAAGACCAGGCACTGGCACTGGCAGAGGAGGAGGCAGACGCAGAAGCATTGGCTCAGGAACAAGAACGTGCTGTTTCACTAGCACAGGAACAAGAACATGCACTGGCACAGTTACAGGCGCACGAACAAGAACATGTACTAGCCCAGTTACAGGCGCAGGAACAAGAGCAGGCACTGGCCCAGTTACAGGCGCAGGAACAAGAGCAGGCACTGGCCCAGTTACAGGCGCATGAACAAGAGCAGGCACTGGCCCAGTTACAGGCGCATGAACAGGAACAGGCACTGGCGCAGTTTCAGGCACAGGAAGAAGTAGAAGTGCAAGAGGAGGAGTTGCATGTGCGTGAACACAACCAAGAGCAACATGAGGATGCTGTGGTTGGTGGAGGCGAGAAAAAGTGGCCTGGATGGCCTGGTGAGAGCGTGTTTCGGATGCTGGTTCCTGCCCAGAAGGTTGGCAGTATAATTGGACGCAAAGGAGAGTTCATTAAGAAAATAGTTGAGGAGACGAGAGCACGCATCAAAATTCTAGACGGTCCTCCAGGAACAACTGAAAGAGCTGTAATGGTTTCTGCTAAGGAGGAGCCTGATTCTTCTTTTCCTCCTGCAATGGATGGCCTTTTGAGGGTTCACAAGCGGATTATTGATGGTTTGGATGGTGATTCTTCTCATGCTCCACCGGGCATGGGTGGCAAAGTCTCCACAAGGCTGCTGGTGGCAGCTTCACAGGCAGGAAGCTTGATTGGAAAACAGGGAGGAACTGTTAAATCTATTCAAGAATCATCTAACTGCATAGTTAGAGTTCTTGGAGCAGAAGACCTGCCGATTTTTGCTCTTCAAGATGACAGAGTTGTTGAAGTAGTGGGTGACGCAGTTGGTGTGCACAAAGCAATTGAACTGATTGCATCTCATCTTAGGAAGTTTCTAGTTGACCGCAGTATAATTCCAATATTCGAAATGCATATGCAAATGGCAAATCCTCAGATGGAACATGCGCCCCCTCATCAACAATGGGGTCCACCCCAAGGTCTTCCCCACAATGCTGGTGGGGGTCCTGGATTTGGGCCTCCTAATCCCCAGTACATGCCACCTCCTCGGCAGCATGACAATTACTATCCACCAGCTGACATGCCCCCCCCTATTGAGAAACAGCCTCATCATGGTATATCAGCTTATGGAAGAGAAGCTCCAATGGGTGTCCACCAGTCATCAAATGCTCAATCAGCACCATCAATGGTCACACAGATCACACAGCAAATGCAAATTCCGCTGTCATATGCTGATGCTGTTATTGGCACAGCTGGTGCAAGTATAAGCTATATTCGACGAGCTAGTGGGGCAACTGTTACAATTCAAGAAACTAGGGGTGTTCCTGGAGAGATGACTGTTGAAATAAGTGGAAGTGCTTCCCAAGTCCAAGCAGCTCAACAACTGATACAGAATTTCATGGCAGATGCTGGAGCACCGCAGCCGACACAAACTGCTGGCTCTGTGGATCAAGGTTATAATTCCTATGCAGCTCATGGTTCAGTATATTCATCTCCCCCATCCAATCAAGGACATGCAGGACATACTGGTGGCTATGGTTCAGTCTATGGCTCACATTATGGGTACTAG

Protein Analysis

572

Amino Acids

61.58

Weight (kDa)

4.83

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1605
Acc36I ACCTGC 1 cut(s) 927
AccB7I CCANNNNNTGG 1 cut(s) 115
AciI CCGC 4 cut(s) 736, 1033, 1367, 1565
AclWI GGATC 1 cut(s) 1602
AcsI RAATTY 3 cut(s) 624, 1362, 1540
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 5 cut(s) 48, 90, 240, 1181, 1712
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 6 cut(s) 875, 938, 956, 995, 1454, 1490
AjnI CCWGG 6 cut(s) 108, 502, 511, 640, 1153, 1471
Alw21I GWGCWC 3 cut(s) 616, 984, 1564
Alw26I GTCTC 3 cut(s) 71, 599, 802
Alw44I GTGCAC 1 cut(s) 980
AlwI GGATC 1 cut(s) 1602
AlwNI CAGNNNCTG 6 cut(s) 115, 277, 313, 349, 385, 1556
AoxI GGCC 7 cut(s) 279, 315, 351, 500, 509, 715, 1163
ApaLI GTGCAC 1 cut(s) 980
ApeKI GCWGC 6 cut(s) 808, 818, 1198, 1520, 1567, 1616
ApoI RAATTY 3 cut(s) 624, 1362, 1540
Asp700I GAANNNNTTC 1 cut(s) 1504
AspLEI GCGC 7 cut(s) 223, 259, 295, 331, 367, 391, 1096
AspS9I GGNCC 7 cut(s) 280, 316, 352, 635, 1115, 1151, 1163
AsuC2I CCSGG 1 cut(s) 780
AsuHPI GGTGA 4 cut(s) 38, 527, 770, 977
AsuII TTCGAA 1 cut(s) 1053
AvaII GGWCC 3 cut(s) 635, 1115, 1151
BaeGI GKGCMC 1 cut(s) 984
BbsI GAAGAC 2 cut(s) 921, 1121
Bbv12I GWGCWC 3 cut(s) 616, 984, 1564
BbvI GCAGC 6 cut(s) 795, 830, 1210, 1532, 1579, 1628
BccI CCATC 8 cut(s) 29, 501, 707, 740, 749, 1078, 1336, 1654
BciT130I CCWGG 6 cut(s) 110, 504, 513, 642, 1155, 1473
BcnI CCSGG 1 cut(s) 780
BcoDI GTCTC 3 cut(s) 71, 599, 802
BfaI CTAG 7 cut(s) 182, 242, 629, 1025, 1431, 1461, 1714
BfuAI ACCTGC 1 cut(s) 927
BglI GCCNNNNNGGC 1 cut(s) 508
BisI GCNGC 6 cut(s) 809, 819, 1199, 1521, 1568, 1617
BlsI GCNGC 6 cut(s) 810, 820, 1200, 1522, 1569, 1618
Bme1390I CCNGG 7 cut(s) 110, 504, 513, 642, 780, 1155, 1473
Bme18I GGWCC 3 cut(s) 635, 1115, 1151
BmgT120I GGNCC 7 cut(s) 280, 316, 352, 635, 1115, 1151, 1163
BmiI GGNNCC 4 cut(s) 540, 684, 1116, 1152
BmrFI CCNGG 7 cut(s) 110, 504, 513, 642, 780, 1155, 1473
BmrI ACTGGG 5 cut(s) 241, 277, 313, 349, 1171
BmsI GCATC 6 cut(s) 460, 522, 627, 1013, 1372, 1543
BmuI ACTGGG 5 cut(s) 241, 277, 313, 349, 1171
BpiI GAAGAC 2 cut(s) 921, 1121
BpmI CTGGAG 3 cut(s) 624, 1494, 1578
Bpu10I CCTNAGC 2 cut(s) 156, 675
Bpu14I TTCGAA 1 cut(s) 1053
BpuMI CCSGG 1 cut(s) 780
BsaJI CCNNGG 2 cut(s) 1123, 1193
BsaXI ACNNNNNCTCC 4 cut(s) 30, 60, 846, 876
Bse3DI GCAATG 1 cut(s) 714
BseBI CCWGG 6 cut(s) 110, 504, 513, 642, 1155, 1473
BseDI CCNNGG 2 cut(s) 1123, 1193
BseGI GGATG 6 cut(s) 475, 512, 537, 718, 760, 1646
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 5 cut(s) 42, 66, 72, 170, 1094
BseRI GAGGAG 7 cut(s) 143, 146, 440, 443, 617, 695, 1182
BseSI GKGCMC 1 cut(s) 984
BseXI GCAGC 6 cut(s) 795, 830, 1210, 1532, 1579, 1628
BshFI GGCC 7 cut(s) 281, 317, 353, 502, 511, 717, 1165
BsiHKAI GWGCWC 3 cut(s) 616, 984, 1564
BsiSI CCGG 1 cut(s) 779
BsmAI GTCTC 3 cut(s) 71, 599, 802
BsmBI CGTCTC 1 cut(s) 599
BsnI GGCC 7 cut(s) 281, 317, 353, 502, 511, 717, 1165
Bsp119I TTCGAA 1 cut(s) 1053
Bsp1286I GDGCHC 3 cut(s) 616, 984, 1564
Bsp143I GATC 2 cut(s) 1344, 1594
BspACI CCGC 4 cut(s) 736, 1033, 1367, 1565
BspANI GGCC 7 cut(s) 281, 317, 353, 502, 511, 717, 1165
BspCNI CTCAG 5 cut(s) 43, 67, 73, 169, 1093
BspLI GGNNCC 4 cut(s) 540, 684, 1116, 1152
BspMI ACCTGC 1 cut(s) 927
BspPI GGATC 1 cut(s) 1602
BspQI GCTCTTC 1 cut(s) 939
BspT104I TTCGAA 1 cut(s) 1053
BsrDI GCAATG 1 cut(s) 714
BssECI CCNNGG 2 cut(s) 1123, 1193
BssMI GATC 2 cut(s) 1344, 1594
BssT1I CCWWGG 1 cut(s) 1123
Bst2UI CCWGG 6 cut(s) 110, 504, 513, 642, 1155, 1473
Bst4CI ACNGT 5 cut(s) 213, 635, 862, 1444, 1486
Bst6I CTCTTC 2 cut(s) 939, 1273
BstBI TTCGAA 1 cut(s) 1053
BstC8I GCNNGC 5 cut(s) 273, 309, 345, 616, 1585
BstDEI CTNAG 7 cut(s) 51, 75, 81, 156, 675, 1013, 1080
BstF5I GGATG 6 cut(s) 475, 512, 537, 718, 760, 1646
BstHHI GCGC 7 cut(s) 223, 259, 295, 331, 367, 391, 1096
BstKTI GATC 2 cut(s) 1347, 1597
BstMAI GTCTC 3 cut(s) 71, 599, 802
BstMBI GATC 2 cut(s) 1344, 1594
BstMWI GCNNNNNNNGC 6 cut(s) 508, 789, 827, 1322, 1366, 1436
BstNI CCWGG 6 cut(s) 110, 504, 513, 642, 1155, 1473
BstNSI RCATGY 7 cut(s) 203, 239, 440, 1094, 1186, 1231, 1664
BstSCI CCNGG 7 cut(s) 108, 502, 511, 640, 778, 1153, 1471
BstSLI GKGCMC 1 cut(s) 984
BstV1I GCAGC 6 cut(s) 795, 830, 1210, 1532, 1579, 1628
BstV2I GAAGAC 2 cut(s) 921, 1121
BstXI CCANNNNNNTGG 2 cut(s) 554, 1142
BsuRI GGCC 7 cut(s) 281, 317, 353, 502, 511, 717, 1165
BtsCI GGATG 6 cut(s) 475, 512, 537, 718, 760, 1646
BtsIMutI CAGTG 7 cut(s) 113, 119, 203, 275, 311, 347, 383
BveI ACCTGC 1 cut(s) 927
Cac8I GCNNGC 5 cut(s) 273, 309, 345, 616, 1585
CaiI CAGNNNCTG 6 cut(s) 115, 277, 313, 349, 385, 1556
CfoI GCGC 7 cut(s) 223, 259, 295, 331, 367, 391, 1096
Cfr13I GGNCC 7 cut(s) 280, 316, 352, 635, 1115, 1151, 1163
CseI GACGC 3 cut(s) 149, 579, 977
Csp6I GTAC 5 cut(s) 47, 89, 239, 1180, 1711
CspCI CAANNNNNGTGG 2 cut(s) 1126, 1161
CviQI GTAC 5 cut(s) 47, 89, 239, 1180, 1711
DdeI CTNAG 7 cut(s) 51, 75, 81, 156, 675, 1013, 1080
DpnI GATC 2 cut(s) 1346, 1596
DpnII GATC 2 cut(s) 1344, 1594
Eam1104I CTCTTC 2 cut(s) 939, 1273
EarI CTCTTC 2 cut(s) 939, 1273
Eco130I CCWWGG 1 cut(s) 1123
Eco47I GGWCC 3 cut(s) 635, 1115, 1151
Eco57I CTGAAG 1 cut(s) 27
EcoO109I RGGNCCY 1 cut(s) 1151
EcoRII CCWGG 6 cut(s) 108, 502, 511, 640, 1153, 1471
EcoT14I CCWWGG 1 cut(s) 1123
EcoT22I ATGCAT 1 cut(s) 1062
ErhI CCWWGG 1 cut(s) 1123
Esp3I CGTCTC 1 cut(s) 599
FauNDI CATATG 2 cut(s) 1062, 1375
Fnu4HI GCNGC 6 cut(s) 809, 819, 1199, 1521, 1568, 1617
FokI GGATG 6 cut(s) 482, 519, 544, 725, 767, 1633
Fsp4HI GCNGC 6 cut(s) 809, 819, 1199, 1521, 1568, 1617
FspBI CTAG 7 cut(s) 182, 242, 629, 1025, 1431, 1461, 1714
GlaI GCGC 7 cut(s) 222, 258, 294, 330, 366, 390, 1095
GluI GCNGC 6 cut(s) 809, 819, 1199, 1521, 1568, 1617
GsuI CTGGAG 3 cut(s) 624, 1494, 1578
HaeIII GGCC 7 cut(s) 281, 317, 353, 502, 511, 717, 1165
HapII CCGG 1 cut(s) 779
HgaI GACGC 3 cut(s) 149, 579, 977
HhaI GCGC 7 cut(s) 223, 259, 295, 331, 367, 391, 1096
Hin6I GCGC 7 cut(s) 221, 257, 293, 329, 365, 389, 1094
HinP1I GCGC 7 cut(s) 221, 257, 293, 329, 365, 389, 1094
HincII GTYRAC 1 cut(s) 1030
HindII GTYRAC 1 cut(s) 1030
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 3 cut(s) 689, 761, 878
HpaII CCGG 1 cut(s) 779
HphI GGTGA 4 cut(s) 38, 527, 770, 977
Hpy166II GTNNAC 7 cut(s) 29, 446, 730, 982, 1030, 1118, 1300
Hpy188I TCNGA 2 cut(s) 531, 1083
Hpy188III TCNNGA 5 cut(s) 158, 629, 875, 938, 1454
Hpy8I GTNNAC 7 cut(s) 29, 446, 730, 982, 1030, 1118, 1300
Hpy99I CGWCG 1 cut(s) 1428
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 5 cut(s) 213, 635, 862, 1444, 1486
HpyCH4IV ACGT 2 cut(s) 87, 169
HpyF10VI GCNNNNNNNGC 6 cut(s) 508, 789, 827, 1322, 1366, 1436
HpyF3I CTNAG 7 cut(s) 51, 75, 81, 156, 675, 1013, 1080
HpySE526I ACGT 2 cut(s) 87, 169
HspAI GCGC 7 cut(s) 221, 257, 293, 329, 365, 389, 1094
Kzo9I GATC 2 cut(s) 1344, 1594
LguI GCTCTTC 1 cut(s) 939
LmnI GCTCC 5 cut(s) 682, 778, 908, 1291, 1559
Lsp1109I GCAGC 6 cut(s) 795, 830, 1210, 1532, 1579, 1628
LweI GCATC 6 cut(s) 460, 522, 627, 1013, 1372, 1543
MaeI CTAG 7 cut(s) 182, 242, 629, 1025, 1431, 1461, 1714
MaeII ACGT 2 cut(s) 87, 169
MaeIII GTNAC 9 cut(s) 58, 213, 249, 285, 321, 357, 965, 1336, 1444
MalI GATC 2 cut(s) 1346, 1596
MboI GATC 2 cut(s) 1344, 1594
MboII GAAGA 7 cut(s) 419, 684, 756, 926, 926, 1121, 1290
MfeI CAATTG 1 cut(s) 990
MhlI GDGCHC 3 cut(s) 616, 984, 1564
Mph1103I ATGCAT 1 cut(s) 1062
MroXI GAANNNNTTC 1 cut(s) 1504
MseI TTAA 2 cut(s) 588, 864
MslI CAYNNNNRTG 3 cut(s) 441, 468, 1674
MspA1I CMGCKG 3 cut(s) 1223, 1369, 1400
MspI CCGG 1 cut(s) 779
MspR9I CCNGG 7 cut(s) 110, 504, 513, 642, 780, 1155, 1473
MunI CAATTG 1 cut(s) 990
MvaI CCWGG 6 cut(s) 110, 504, 513, 642, 1155, 1473
MwoI GCNNNNNNNGC 6 cut(s) 508, 789, 827, 1322, 1366, 1436
NciI CCSGG 1 cut(s) 780
NdeI CATATG 2 cut(s) 1062, 1375
NdeII GATC 2 cut(s) 1344, 1594
NlaIV GGNNCC 4 cut(s) 540, 684, 1116, 1152
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 3 cut(s) 58, 965, 1336
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 7 cut(s) 203, 239, 440, 1094, 1186, 1231, 1664
NspV TTCGAA 1 cut(s) 1053
PciI ACATGT 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 939
PdmI GAANNNNTTC 1 cut(s) 1504
PfeI GAWTC 3 cut(s) 689, 761, 878
PflMI CCANNNNNTGG 1 cut(s) 115
PfoI TCCNGGA 3 cut(s) 640, 1153, 1471
PkrI GCNGC 6 cut(s) 810, 820, 1200, 1522, 1569, 1618
PpuMI RGGWCCY 1 cut(s) 1151
PscI ACATGT 1 cut(s) 235
PsiI TTATAA 1 cut(s) 1605
Psp5II RGGWCCY 1 cut(s) 1151
Psp6I CCWGG 6 cut(s) 108, 502, 511, 640, 1153, 1471
PspGI CCWGG 6 cut(s) 108, 502, 511, 640, 1153, 1471
PspN4I GGNNCC 4 cut(s) 540, 684, 1116, 1152
PspPI GGNCC 7 cut(s) 280, 316, 352, 635, 1115, 1151, 1163
PspPPI RGGWCCY 1 cut(s) 1151
PstNI CAGNNNCTG 6 cut(s) 115, 277, 313, 349, 385, 1556
PvuII CAGCTG 2 cut(s) 1223, 1400
RsaI GTAC 5 cut(s) 48, 90, 240, 1181, 1712
RsaNI GTAC 5 cut(s) 47, 89, 239, 1180, 1711
RseI CAYNNNNRTG 3 cut(s) 441, 468, 1674
SapI GCTCTTC 1 cut(s) 939
SaqAI TTAA 2 cut(s) 588, 864
SatI GCNGC 6 cut(s) 809, 819, 1199, 1521, 1568, 1617
Sau3AI GATC 2 cut(s) 1344, 1594
Sau96I GGNCC 7 cut(s) 280, 316, 352, 635, 1115, 1151, 1163
ScrFI CCNGG 7 cut(s) 110, 504, 513, 642, 780, 1155, 1473
SduI GDGCHC 3 cut(s) 616, 984, 1564
SfaNI GCATC 6 cut(s) 460, 522, 627, 1013, 1372, 1543
SfiI GGCCNNNNNGGCC 1 cut(s) 508
SfuI TTCGAA 1 cut(s) 1053
SinI GGWCC 3 cut(s) 635, 1115, 1151
SmiMI CAYNNNNRTG 3 cut(s) 441, 468, 1674
SsiI CCGC 4 cut(s) 736, 1033, 1367, 1565
SspI AATATT 1 cut(s) 1050
SspMI CTAG 7 cut(s) 182, 242, 629, 1025, 1431, 1461, 1714
StyD4I CCNGG 7 cut(s) 108, 502, 511, 640, 778, 1153, 1471
StyI CCWWGG 1 cut(s) 1123
TaaI ACNGT 5 cut(s) 213, 635, 862, 1444, 1486
TaiI ACGT 2 cut(s) 90, 172
TaqI TCGA 2 cut(s) 1053, 1423
TatI WGTACW 2 cut(s) 238, 1179
TfiI GAWTC 3 cut(s) 689, 761, 878
Tru1I TTAA 2 cut(s) 588, 864
Tru9I TTAA 2 cut(s) 588, 864
TscAI CASTG 7 cut(s) 120, 126, 210, 282, 318, 354, 390
TseFI GTSAC 3 cut(s) 58, 965, 1336
TseI GCWGC 6 cut(s) 808, 818, 1198, 1520, 1567, 1616
Tsp45I GTSAC 3 cut(s) 58, 965, 1336
TspDTI ATGAA 5 cut(s) 348, 384, 574, 1534, 1626
TspRI CASTG 7 cut(s) 120, 126, 210, 282, 318, 354, 390
Van91I CCANNNNNTGG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 980
VpaK11BI GGWCC 3 cut(s) 635, 1115, 1151
XapI RAATTY 3 cut(s) 624, 1362, 1540
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 7 cut(s) 203, 239, 440, 1094, 1186, 1231, 1664
XcmI CCANNNNNNNNNTGG 2 cut(s) 808, 1142
XmnI GAANNNNTTC 1 cut(s) 1504
XspI CTAG 7 cut(s) 182, 242, 629, 1025, 1431, 1461, 1714
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.