Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007921

Physical Location & Seq

Genomic Coordinates Reverse (-)

1931894 .. 1937439

Gene Structure 5546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG029200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGTTTCCGGCAAGGAGGAGCCTGATTCTTCCCTCCCTCCTGCAATTGATGGCCTTTTGAGAGTTCATGCACGCATTGTTGATGGTTTGGATGCTGATTCTTCTCAAGCTCCCCCAGGCATGGGTGGTAAAGTTTCGACAAGGATGCTGGTTCCAGCCTCACAGGCTGGTAGCTTGATTGGAAAACAGGGAGGAACTGTTAAATCCATTCAAGAGGCATCTAACTGTATAGTTAGAGTTCTTGGATCAGAGGACCTACCGGTTTTTGCTCTTTCAGATGACAGAGTTGTTGAAGTAGTGGGCGAGCCAGTTGGTGTCCACAAAGGAATTGAACTAATTGCATCTCACCTCAGGAAGTTTTTAGTTGACCGCAGTATAATTCCAGTATTTGAAATGCATATGCAGGCAAATCCTCCCATGGAGCACATTCCCCCTCATCAATCATGGGGTCCACCTCAAGGTATTCCACACAATGCTGGTGGGGGTCCTGGATATGGGCCACCTAATCCCCAGTACATACCATCTTCTCGGCAGCAATTTGACAACTACTATCCACCAGCTGACTTGCCCCCGCCTATGGAGAAACAGCCGCATCATGGCATATCAGCTTATGGACGAGAAGCTCCTATGGGTGTTCATACATCATCAAATGCTCAATCAGCACCATCAATGGTCTCACAGCTCACACATCAAATGCAAATTCCATTGTCATATGCTGATGCTGTTATTGGCACAGCTGGTGCAAGTATAAGCTATATTCGTCGGGCTAGTGGGGCAACTGTTACAATACAAGAGACGAGGGGTGTTCCTGGGGAGATGACTGTTGAAATAAGTGGAAGTGCTTCCCAAGTCCAAGCAGCAGAGCAACTGATACAGAATTTCATGGTCGAGGCTGGAGCACCACAACAGCCACAAGCTACTGCCCCTGTGGATCAGGGTTATAATTCCTATCCAGCTCATGGTTCCGTGTATGCATCTCCCCCATCCAACCAAGGTCACCAAGGCCATACTGGCGGCTATGGTTCAGTCTATGGCCAACACTATGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009909 GO:0009911 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1

Protein Analysis

350

Amino Acids

36.87

Weight (kDa)

5.79

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	47 - 114	5.8e-16	KH domain
KH_1	PF00013	229 - 292	2.7e-13	KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04610 AT3G04610 AT3G04610 AT3G04610
fragaria_vesca	FvH4_6g02580 FvH4_6g02580 FvH4_6g02580 FvH4_6g02580
malus_domestica	MD04G1227000.v1.1 MD12G1244000.v1.1
prunus_persica	Prupe.6G345700_v2.0.a1 Prupe.6G345700_v2.0.a1
pyrus_communis	pycom04g20030 pycom12g22300
rosa_chinensis	RchiOBHm_Chr3g0450491
rosa_laevigata	RLG00000025727
rosa_multiflora	Rmu_sc0005951.1_g000006
rosa_roxburghii	Rroxscaffold_6G00428170
rosa_rugosa	Rorug02G0628000
rosa_samantha	Rh3AG028700 Rh3BG029200 Rh3CG028000 Rh3DG028900
rosa_wichuraiana	Rw3G002210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	942
AccB7I	CCANNNNNTGG	1 cut(s)	959
AciI	CCGC	4 cut(s)	370, 572, 590, 1014
AclWI	GGATC	2 cut(s)	253, 939
AcoI	YGGCCR	1 cut(s)	1033
AcsI	RAATTY	2 cut(s)	699, 877
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	7 cut(s)	121, 122, 458, 494, 577, 596, 959
AgeI	ACCGGT	1 cut(s)	259
AgsI	TTSAA	5 cut(s)	212, 293, 332, 392, 827
AjnI	CCWGG	3 cut(s)	115, 487, 808
Alw21I	GWGCWC	2 cut(s)	426, 901
Alw26I	GTCTC	2 cut(s)	679, 788
AlwI	GGATC	2 cut(s)	253, 939
AoxI	GGCC	4 cut(s)	52, 497, 1003, 1033
ApeKI	GCWGC	2 cut(s)	532, 857
ApoI	RAATTY	2 cut(s)	699, 877
AsiGI	ACCGGT	1 cut(s)	259
Asp700I	GAANNNNTTC	1 cut(s)	841
AspS9I	GGNCC	4 cut(s)	253, 449, 485, 497
AsuHPI	GGTGA	2 cut(s)	338, 989
AvaII	GGWCC	3 cut(s)	253, 449, 485
AxyI	CCTNAGG	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	1035
Bbv12I	GWGCWC	2 cut(s)	426, 901
BbvI	GCAGC	2 cut(s)	544, 869
BccI	CCATC	5 cut(s)	44, 77, 529, 673, 991
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	3 cut(s)	117, 489, 810
BcoDI	GTCTC	2 cut(s)	679, 788
BfaI	CTAG	2 cut(s)	768, 1051
BglI	GCCNNNNNGGC	2 cut(s)	164, 1011
BisI	GCNGC	4 cut(s)	533, 590, 858, 1015
BlsI	GCNGC	4 cut(s)	534, 591, 859, 1016
Bme1390I	CCNGG	3 cut(s)	117, 489, 810
Bme18I	GGWCC	3 cut(s)	253, 449, 485
BmgT120I	GGNCC	4 cut(s)	253, 449, 485, 497
BmiI	GGNNCC	5 cut(s)	21, 153, 450, 486, 964
BmrFI	CCNGG	3 cut(s)	117, 489, 810
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	7 cut(s)	82, 135, 227, 350, 601, 709, 983
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	90, 441
BsaI	GGTCTC	1 cut(s)	679
BsaJI	CCNNGG	5 cut(s)	115, 417, 809, 991, 1000
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	183, 213
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 122, 458, 494, 577, 596, 959
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	4 cut(s)	308, 383, 511, 1015
Bse21I	CCTNAGG	1 cut(s)	350
BseBI	CCWGG	3 cut(s)	117, 489, 810
BseDI	CCNNGG	5 cut(s)	115, 417, 809, 991, 1000
BseGI	GGATG	3 cut(s)	97, 150, 983
BseLI	CCNNNNNNNGG	7 cut(s)	121, 122, 458, 494, 577, 596, 959
BseMII	CTCAG	1 cut(s)	364
BseNI	ACTGG	4 cut(s)	308, 383, 511, 1015
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	544, 869
BshFI	GGCC	4 cut(s)	54, 499, 1005, 1035
BshTI	ACCGGT	1 cut(s)	259
BsiHKAI	GWGCWC	2 cut(s)	426, 901
BsiSI	CCGG	2 cut(s)	9, 260
BslI	CCNNNNNNNGG	7 cut(s)	121, 122, 458, 494, 577, 596, 959
BsmAI	GTCTC	2 cut(s)	679, 788
BsmBI	CGTCTC	1 cut(s)	788
BsnI	GGCC	4 cut(s)	54, 499, 1005, 1035
Bso31I	GGTCTC	1 cut(s)	679
Bsp1286I	GDGCHC	2 cut(s)	426, 901
Bsp143I	GATC	2 cut(s)	245, 931
Bsp19I	CCATGG	1 cut(s)	417
BspACI	CCGC	4 cut(s)	370, 572, 590, 1014
BspANI	GGCC	4 cut(s)	54, 499, 1005, 1035
BspCNI	CTCAG	1 cut(s)	363
BspLI	GGNNCC	5 cut(s)	21, 153, 450, 486, 964
BspPI	GGATC	2 cut(s)	253, 939
BspTNI	GGTCTC	1 cut(s)	679
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	4 cut(s)	308, 383, 511, 1015
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	5 cut(s)	115, 417, 809, 991, 1000
BssMI	GATC	2 cut(s)	245, 931
BssT1I	CCWWGG	3 cut(s)	417, 991, 1000
Bst2UI	CCWGG	3 cut(s)	117, 489, 810
Bst4CI	ACNGT	4 cut(s)	199, 227, 781, 823
BstC8I	GCNNGC	3 cut(s)	73, 305, 405
BstDEI	CTNAG	1 cut(s)	350
BstDSI	CCRYGG	1 cut(s)	417
BstEII	GGTNACC	1 cut(s)	995
BstF5I	GGATG	3 cut(s)	97, 150, 983
BstKTI	GATC	2 cut(s)	248, 934
BstMAI	GTCTC	2 cut(s)	679, 788
BstMBI	GATC	2 cut(s)	245, 931
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 659, 773, 1011
BstNI	CCWGG	3 cut(s)	117, 489, 810
BstPI	GGTNACC	1 cut(s)	995
BstSCI	CCNGG	3 cut(s)	115, 487, 808
BstV1I	GCAGC	2 cut(s)	544, 869
BstXI	CCANNNNNNTGG	1 cut(s)	1043
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	54, 499, 1005, 1035
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	97, 150, 983
Cac8I	GCNNGC	3 cut(s)	73, 305, 405
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	4 cut(s)	253, 449, 485, 497
Csp6I	GTAC	1 cut(s)	514
CspAI	ACCGGT	1 cut(s)	259
CspCI	CAANNNNNGTGG	2 cut(s)	460, 495
CviAII	CATG	7 cut(s)	68, 121, 418, 444, 596, 883, 959
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	1 cut(s)	350
DpnI	GATC	2 cut(s)	247, 933
DpnII	GATC	2 cut(s)	245, 931
EaeI	YGGCCR	1 cut(s)	1033
Eco130I	CCWWGG	3 cut(s)	417, 991, 1000
Eco31I	GGTCTC	1 cut(s)	679
Eco47I	GGWCC	3 cut(s)	253, 449, 485
Eco81I	CCTNAGG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	995
EcoO109I	RGGNCCY	2 cut(s)	253, 485
EcoO65I	GGTNACC	1 cut(s)	995
EcoRII	CCWGG	3 cut(s)	115, 487, 808
EcoT14I	CCWWGG	3 cut(s)	417, 991, 1000
EcoT22I	ATGCAT	2 cut(s)	399, 976
ErhI	CCWWGG	3 cut(s)	417, 991, 1000
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	7 cut(s)	71, 124, 421, 447, 599, 886, 962
FatI	CATG	7 cut(s)	67, 120, 417, 443, 595, 882, 958
FauI	CCCGC	1 cut(s)	579
FauNDI	CATATG	2 cut(s)	399, 712
Fnu4HI	GCNGC	4 cut(s)	533, 590, 858, 1015
FokI	GGATG	3 cut(s)	104, 157, 970
Fsp4HI	GCNGC	4 cut(s)	533, 590, 858, 1015
FspBI	CTAG	2 cut(s)	768, 1051
GluI	GCNGC	4 cut(s)	533, 590, 858, 1015
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	4 cut(s)	54, 499, 1005, 1035
HapII	CCGG	2 cut(s)	9, 260
Hin1II	CATG	7 cut(s)	71, 124, 421, 447, 599, 886, 962
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	26, 98
HpaII	CCGG	2 cut(s)	9, 260
HphI	GGTGA	2 cut(s)	338, 989
Hpy166II	GTNNAC	3 cut(s)	319, 367, 452
Hpy188I	TCNGA	2 cut(s)	250, 277
Hpy188III	TCNNGA	2 cut(s)	212, 352
Hpy8I	GTNNAC	3 cut(s)	319, 367, 452
Hpy99I	CGWCG	1 cut(s)	765
HpyCH4III	ACNGT	4 cut(s)	199, 227, 781, 823
HpyCH4V	TGCA	8 cut(s)	44, 71, 341, 397, 403, 697, 743, 974
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 659, 773, 1011
HpyF3I	CTNAG	1 cut(s)	350
Hsp92II	CATG	7 cut(s)	71, 124, 421, 447, 599, 886, 962
Kzo9I	GATC	2 cut(s)	245, 931
LmnI	GCTCC	5 cut(s)	19, 115, 421, 628, 896
Lsp1109I	GCAGC	2 cut(s)	544, 869
LweI	GCATC	7 cut(s)	82, 135, 227, 350, 601, 709, 983
MaeI	CTAG	2 cut(s)	768, 1051
MaeIII	GTNAC	3 cut(s)	781, 995, 1046
MalI	GATC	2 cut(s)	247, 933
MboI	GATC	2 cut(s)	245, 931
MboII	GAAGA	3 cut(s)	21, 93, 516
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	2 cut(s)	426, 901
MlsI	TGGCCA	1 cut(s)	1035
MluCI	AATT	8 cut(s)	45, 327, 336, 378, 536, 699, 877, 943
MluNI	TGGCCA	1 cut(s)	1035
MmeI	TCCRAC	1 cut(s)	1011
Mox20I	TGGCCA	1 cut(s)	1035
Mph1103I	ATGCAT	2 cut(s)	399, 976
MroXI	GAANNNNTTC	1 cut(s)	841
MscI	TGGCCA	1 cut(s)	1035
MseI	TTAA	1 cut(s)	201
Msp20I	TGGCCA	1 cut(s)	1035
MspA1I	CMGCKG	2 cut(s)	560, 737
MspI	CCGG	2 cut(s)	9, 260
MspR9I	CCNGG	3 cut(s)	117, 489, 810
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	3 cut(s)	117, 489, 810
MwoI	GCNNNNNNNGC	4 cut(s)	164, 659, 773, 1011
NcoI	CCATGG	1 cut(s)	417
NdeI	CATATG	2 cut(s)	399, 712
NdeII	GATC	2 cut(s)	245, 931
NlaIII	CATG	7 cut(s)	71, 124, 421, 447, 599, 886, 962
NlaIV	GGNNCC	5 cut(s)	21, 153, 450, 486, 964
NmeAIII	GCCGAG	1 cut(s)	508
NmuCI	GTSAC	1 cut(s)	995
NsiI	ATGCAT	2 cut(s)	399, 976
PdmI	GAANNNNTTC	1 cut(s)	841
PfeI	GAWTC	2 cut(s)	26, 98
PflMI	CCANNNNNTGG	1 cut(s)	959
PfoI	TCCNGGA	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	534, 591, 859, 1016
PpuMI	RGGWCCY	2 cut(s)	253, 485
PsiI	TTATAA	1 cut(s)	942
Psp5II	RGGWCCY	2 cut(s)	253, 485
Psp6I	CCWGG	3 cut(s)	115, 487, 808
PspEI	GGTNACC	1 cut(s)	995
PspGI	CCWGG	3 cut(s)	115, 487, 808
PspN4I	GGNNCC	5 cut(s)	21, 153, 450, 486, 964
PspPI	GGNCC	4 cut(s)	253, 449, 485, 497
PspPPI	RGGWCCY	2 cut(s)	253, 485
PvuII	CAGCTG	2 cut(s)	560, 737
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	4 cut(s)	533, 590, 858, 1015
Sau3AI	GATC	2 cut(s)	245, 931
Sau96I	GGNCC	4 cut(s)	253, 449, 485, 497
ScrFI	CCNGG	3 cut(s)	117, 489, 810
SduI	GDGCHC	2 cut(s)	426, 901
SfaNI	GCATC	7 cut(s)	82, 135, 227, 350, 601, 709, 983
SinI	GGWCC	3 cut(s)	253, 449, 485
SmlI	CTYRAG	2 cut(s)	105, 456
SmoI	CTYRAG	2 cut(s)	105, 456
Sse9I	AATT	8 cut(s)	45, 327, 336, 378, 536, 699, 877, 943
SsiI	CCGC	4 cut(s)	370, 572, 590, 1014
SspMI	CTAG	2 cut(s)	768, 1051
StyD4I	CCNGG	3 cut(s)	115, 487, 808
StyI	CCWWGG	3 cut(s)	417, 991, 1000
TaaI	ACNGT	4 cut(s)	199, 227, 781, 823
TaqI	TCGA	2 cut(s)	137, 888
TasI	AATT	8 cut(s)	45, 327, 336, 378, 536, 699, 877, 943
TatI	WGTACW	1 cut(s)	513
TauI	GCSGC	2 cut(s)	592, 1017
TfiI	GAWTC	2 cut(s)	26, 98
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	995
TseI	GCWGC	2 cut(s)	532, 857
Tsp45I	GTSAC	1 cut(s)	995
TspDTI	ATGAA	3 cut(s)	56, 626, 871
TspGWI	ACGGA	1 cut(s)	955
Van91I	CCANNNNNTGG	1 cut(s)	959
VpaK11BI	GGWCC	3 cut(s)	253, 449, 485
XapI	RAATTY	2 cut(s)	699, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XmnI	GAANNNNTTC	1 cut(s)	841
XspI	CTAG	2 cut(s)	768, 1051
Zsp2I	ATGCAT	2 cut(s)	399, 976

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.