Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011116

Physical Location & Seq

Genomic Coordinates Forward (+)

4390064 .. 4393421

Gene Structure 3358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1063400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGCGTCCCAAATGGCGATCCTCGCGCGGACCCGAGCGCTGGCGAAAACCCTAAACACGAACCCGGGATTCAAGTCCATCACGACCTTCACATTTCTCTCGCAGGAGCCCCAACTCGCCGTCGAGCCGACTCACCCCATCGCCTCCACTCCGCTCCCTCCGAACCCGGCCTCCGGCAGCCCCATGTACAACGAGAACTGGCGGAATCCGGCCCCCAACTCGCCCATGGGTCAGTCCCTGCTACCCCTCGGGTTCCTCAACCAGTCCCCGAGCGCCCGATTCCAGGTCATGTCGCAAAACCTGGACGCGCAGAGCCTGATGAACGAGTTCGCCAATTGGATGACGTCACAGCGATGGCCGGACATGAAGCAGCTGTTCGAGTTCTGGGTTCGGTCGTTGGATAAGAACGGGAAGCCGAATAAGCCCGACGTGAGCTTGTATAACCATTACTTGAGGGCCAATTTGATGATGGGAGCCTCGCCGGGGGAGATGCTGGATCTGGTGGCGCATATGGAGGACTACGGTATCACGCCCAACACCGCGTCGTTTAATCTCGTCCTCAAGGCCATGCACCAGGCCAAGGAGACCGAGGCCGCCGATAAATTGCTCGAAAGGATGTTGCAGACAGGGAAGGAATCTCCGCCTGACGAAGAGTCATATGACTTGGTTGTTGGCATGCTGTTACAAATGGACCAGATTGACGCCGCCTTGAAATATATAGATTTGAATTTAAAATCTGGTTACATGCTGTCAATGCCGGTGTTTAGGGAATGTGTACGAGGCTGTGTCAATAAGGGAAAGCTAGATATTTTGGTTTCTATTATTGACAAGTGCAAGTCAATGGATCAGAACAAAGCTCTTTGCCCACCGTGGAACTTGTGCAACTATATTGCAGAAGCTGCTCTGCAAGATGATAATAGCAAATTAGCATTTCATGCCCTGGAGTTTATGGCCAAATGGATTGCTAGGGGTGAGCAAGCAAGACCTGTTGTTTTTCTTTCCACAGATGAAGGGCTGCTTGTGTCGGCACTTGCAACTGCCGGCAGGACACACAGTACTACTTTACTTGATGCATCATGGGCAATCTTATTACGCTCGTTGCGCCAAAAGAAGGTCCCTAATCCAGAATCTTACCGTGCGAAGATATGTGCCCTTGCATCGCTGGGGATTCTACAAAGAGCTTTTAGTACTCTTCGTGAATATGAGTCTGCTTATGGTAATTCCGATAAAGAAGCAGAAGAGGAACTATTCTCCCCATTTACTTCATTGTATCCGCTGGTTGTTGCCTGCTCCAAGGGAGGTTTTGGAACTTTGGACTCCGTGTATTATCAATTAGAAAATTTGAGCCGTGCAGACCCTCCATACAAATCTGTTGCTGCATTGAATTGCATAATATTAGGTTGTGCAAATACCTGGCAGATCGAGCGTGCTTACCAGACCTTTGAGGCAATTACTTCCACATTTGAATTGACCCCTGATATACATTCTTACAACGCTCTCATGTATGCTTTTGGAAAGCACAAGCAGACTTTTGAAGCTTCAAGAGTATTTGAGCACTTGGTTAGTGTGGGCGTCAAACCCAATGCAAAGTCGTACTCGTTACTTGTAGACGCTCATCTCATCAACAGAGATCCAAAAGCTGCGGTCTCGGTGATTGATGACATGGTAAATGCTGGTTTTGAACCAACGAAAGAACTGCTGAAAAGGGTCAGAAGAAGATGTAGGCGAGAGCTTGACTACGAGAGTGATGATCATGTGGATACCTTGGCTAAAAGGTTCAAAATTGTGATGGGTTCAGAGAATCGCAGGGACTGGCTGTTTAATCTCAATTACAGCACCGGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

617

Amino Acids

69.11

Weight (kDa)

6.45

Isoelectric Point (pI)

44.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	492 - 538	2.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26460
fragaria_vesca	FvH4_4g30160 FvH4_4g30160
malus_domestica	MD13G1063400.v1.1 MD16G1061800.v1.1
prunus_persica	Prupe.1G286100_v2.0.a1
pyrus_communis	pycom13g05570 pycom16g05390
rosa_chinensis	RchiOBHm_Chr4g0438491
rosa_laevigata	RLG00000006359
rosa_multiflora	Rmu_sc0002327.1_g000019 Rmu_sc0004398.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379500
rosa_rugosa	Rorug04G0310300
rosa_samantha	Rh4AG361100 Rh4BG372400 Rh4CG386400 Rh4DG367200
rosa_wichuraiana	Rw0G006590 Rw0G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	347
AccBSI	CCGCTC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	1608
AccII	CGCG	4 cut(s)	26, 28, 308, 542
AciI	CCGC	9 cut(s)	28, 152, 202, 540, 594, 641, 705, 1274, 1643
AclWI	GGATC	4 cut(s)	13, 504, 852, 1625
AcoI	YGGCCR	2 cut(s)	356, 951
AcsI	RAATTY	2 cut(s)	727, 1339
AcyI	GRCGYC	4 cut(s)	5, 344, 702, 1572
AfaI	GTAC	5 cut(s)	188, 777, 1057, 1189, 1595
AfeI	AGCGCT	1 cut(s)	39
AfiI	CCNNNNNNNGG	6 cut(s)	40, 173, 283, 483, 580, 1111
AgsI	TTSAA	9 cut(s)	73, 712, 727, 1384, 1466, 1535, 1542, 1682, 1780
AhdI	GACNNNNNGTC	1 cut(s)	652
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	5 cut(s)	282, 300, 573, 939, 1412
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	9 cut(s)	373, 435, 802, 857, 899, 1181, 1538, 1640, 1732
AluI	AGCT	9 cut(s)	373, 435, 802, 857, 899, 1181, 1538, 1640, 1732
Alw21I	GWGCWC	1 cut(s)	1557
Alw26I	GTCTC	2 cut(s)	578, 1651
AlwI	GGATC	4 cut(s)	13, 504, 852, 1625
AlwNI	CAGNNNCTG	4 cut(s)	238, 316, 899, 1812
Ama87I	CYCGRG	4 cut(s)	33, 64, 248, 268
Aor51HI	AGCGCT	1 cut(s)	39
AoxI	GGCC	8 cut(s)	168, 210, 356, 456, 564, 576, 591, 951
ApeKI	GCWGC	6 cut(s)	177, 370, 899, 1015, 1376, 1640
ApoI	RAATTY	2 cut(s)	727, 1339
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	6 cut(s)	28, 40, 275, 310, 508, 1104
AspS9I	GGNCC	5 cut(s)	30, 211, 456, 691, 1114
AsuC2I	CCSGG	4 cut(s)	65, 66, 167, 483
AsuHPI	GGTGA	3 cut(s)	125, 983, 1663
AvaI	CYCGRG	4 cut(s)	33, 64, 248, 268
AvaII	GGWCC	3 cut(s)	30, 691, 1114
BaeGI	GKGCMC	1 cut(s)	1153
BaeI	ACNNNNGTAYC	2 cut(s)	508, 541
BalI	TGGCCA	1 cut(s)	953
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	1557
BbvI	GCAGC	6 cut(s)	189, 382, 886, 1002, 1363, 1627
BccI	CCATC	5 cut(s)	86, 146, 348, 463, 1783
BceAI	ACGGC	2 cut(s)	104, 1332
BcgI	CGANNNNNNTGC	2 cut(s)	1678, 1712
BciT130I	CCWGG	5 cut(s)	284, 302, 575, 941, 1414
BciVI	GTATCC	2 cut(s)	1281, 1753
BclI	TGATCA	1 cut(s)	1750
BcnI	CCSGG	4 cut(s)	65, 66, 167, 483
BcoDI	GTCTC	2 cut(s)	578, 1651
BfaI	CTAG	2 cut(s)	803, 966
BfoI	RGCGCY	2 cut(s)	41, 276
BfuI	GTATCC	2 cut(s)	1281, 1753
BisI	GCNGC	8 cut(s)	178, 371, 594, 705, 900, 1016, 1377, 1641
BlsI	GCNGC	8 cut(s)	179, 372, 595, 706, 901, 1017, 1378, 1642
BmcAI	AGTACT	2 cut(s)	1057, 1189
Bme1390I	CCNGG	9 cut(s)	65, 66, 167, 284, 302, 483, 575, 941, 1414
Bme18I	GGWCC	3 cut(s)	30, 691, 1114
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	4 cut(s)	33, 64, 248, 268
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	5 cut(s)	30, 211, 456, 691, 1114
BmiI	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
BmrFI	CCNGG	9 cut(s)	65, 66, 167, 284, 302, 483, 575, 941, 1414
BmsI	GCATC	4 cut(s)	480, 1060, 1082, 1166
BpmI	CTGGAG	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	472, 545
BpuMI	CCSGG	4 cut(s)	65, 66, 167, 483
BsaHI	GRCGYC	4 cut(s)	5, 344, 702, 1572
BsaI	GGTCTC	2 cut(s)	578, 1651
BsaWI	WCCGGW	1 cut(s)	1838
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 173, 283, 483, 580, 1111
Bse118I	RCCGGY	2 cut(s)	757, 1040
Bse1I	ACTGG	3 cut(s)	203, 262, 1817
BseBI	CCWGG	5 cut(s)	284, 302, 575, 941, 1414
BseGI	GGATG	2 cut(s)	345, 621
BseLI	CCNNNNNNNGG	6 cut(s)	40, 173, 283, 483, 580, 1111
BseNI	ACTGG	3 cut(s)	203, 262, 1817
BseSI	GKGCMC	1 cut(s)	1153
BseXI	GCAGC	6 cut(s)	189, 382, 886, 1002, 1363, 1627
BseYI	CCCAGC	1 cut(s)	1162
BsgI	GTGCAG	1 cut(s)	1371
Bsh1236I	CGCG	4 cut(s)	26, 28, 308, 542
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	8 cut(s)	170, 212, 358, 458, 566, 578, 593, 953
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	1557
BsiHKCI	CYCGRG	4 cut(s)	33, 64, 248, 268
BsiSI	CCGG	9 cut(s)	65, 167, 174, 209, 359, 482, 758, 1041, 1839
BslFI	GGGAC	4 cut(s)	220, 250, 1100, 1823
BslI	CCNNNNNNNGG	6 cut(s)	40, 173, 283, 483, 580, 1111
BsmAI	GTCTC	2 cut(s)	578, 1651
BsmFI	GGGAC	4 cut(s)	220, 250, 1100, 1823
BsnI	GGCC	8 cut(s)	170, 212, 358, 458, 566, 578, 593, 953
Bso31I	GGTCTC	2 cut(s)	578, 1651
BsoBI	CYCGRG	4 cut(s)	33, 64, 248, 268
Bsp1286I	GDGCHC	3 cut(s)	111, 1153, 1557
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	9 cut(s)	28, 152, 202, 540, 594, 641, 705, 1274, 1643
BspANI	GGCC	8 cut(s)	170, 212, 358, 458, 566, 578, 593, 953
BspFNI	CGCG	4 cut(s)	26, 28, 308, 542
BspLI	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
BspPI	GGATC	4 cut(s)	13, 504, 852, 1625
BspTNI	GGTCTC	2 cut(s)	578, 1651
BsrBI	CCGCTC	1 cut(s)	154
BsrFI	RCCGGY	2 cut(s)	757, 1040
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	3 cut(s)	203, 262, 1817
BssAI	RCCGGY	2 cut(s)	757, 1040
BssMI	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
BssNI	GRCGYC	4 cut(s)	5, 344, 702, 1572
BssT1I	CCWWGG	4 cut(s)	225, 579, 1293, 1764
Bst2UI	CCWGG	5 cut(s)	284, 302, 575, 941, 1414
Bst4CI	ACNGT	4 cut(s)	524, 870, 1055, 1136
Bst6I	CTCTTC	3 cut(s)	645, 1197, 1233
BstACI	GRCGYC	4 cut(s)	5, 344, 702, 1572
BstAPI	GCANNNNNTGC	2 cut(s)	899, 935
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	6 cut(s)	42, 677, 978, 1042, 1288, 1428
BstDSI	CCRYGG	2 cut(s)	225, 869
BstF5I	GGATG	2 cut(s)	345, 621
BstFNI	CGCG	4 cut(s)	26, 28, 308, 542
BstH2I	RGCGCY	2 cut(s)	41, 276
BstHHI	GCGC	6 cut(s)	28, 40, 275, 310, 508, 1104
BstKTI	GATC	6 cut(s)	21, 499, 847, 1422, 1633, 1753
BstMAI	GTCTC	2 cut(s)	578, 1651
BstMBI	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
BstNI	CCWGG	5 cut(s)	284, 302, 575, 941, 1414
BstNSI	RCATGY	2 cut(s)	679, 748
BstSCI	CCNGG	9 cut(s)	63, 64, 165, 282, 300, 481, 573, 939, 1412
BstSLI	GKGCMC	1 cut(s)	1153
BstUI	CGCG	4 cut(s)	26, 28, 308, 542
BstV1I	GCAGC	6 cut(s)	189, 382, 886, 1002, 1363, 1627
BstX2I	RGATCY	2 cut(s)	496, 1630
BstYI	RGATCY	2 cut(s)	496, 1630
BsuI	GTATCC	2 cut(s)	1281, 1753
BsuRI	GGCC	8 cut(s)	170, 212, 358, 458, 566, 578, 593, 953
BtgI	CCRYGG	2 cut(s)	225, 869
BtgZI	GCGATG	3 cut(s)	124, 367, 1143
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	345, 621
Cac8I	GCNNGC	6 cut(s)	42, 677, 978, 1042, 1288, 1428
CaiI	CAGNNNCTG	4 cut(s)	238, 316, 899, 1812
CfoI	GCGC	6 cut(s)	28, 40, 275, 310, 508, 1104
Cfr10I	RCCGGY	2 cut(s)	757, 1040
Cfr13I	GGNCC	5 cut(s)	30, 211, 456, 691, 1114
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	5 cut(s)	314, 531, 710, 1561, 1619
Csp6I	GTAC	5 cut(s)	187, 776, 1056, 1188, 1594
CviQI	GTAC	5 cut(s)	187, 776, 1056, 1188, 1594
DpnI	GATC	6 cut(s)	20, 498, 846, 1421, 1632, 1752
DpnII	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
DraI	TTTAAA	1 cut(s)	732
DriI	GACNNNNNGTC	1 cut(s)	652
EaeI	YGGCCR	2 cut(s)	356, 951
Eam1104I	CTCTTC	3 cut(s)	645, 1197, 1233
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	3 cut(s)	645, 1197, 1233
EciI	GGCGGA	2 cut(s)	217, 630
Eco130I	CCWWGG	4 cut(s)	225, 579, 1293, 1764
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	2 cut(s)	578, 1651
Eco47I	GGWCC	3 cut(s)	30, 691, 1114
Eco47III	AGCGCT	1 cut(s)	39
Eco88I	CYCGRG	4 cut(s)	33, 64, 248, 268
EcoO109I	RGGNCCY	1 cut(s)	1114
EcoRII	CCWGG	5 cut(s)	282, 300, 573, 939, 1412
EcoT14I	CCWWGG	4 cut(s)	225, 579, 1293, 1764
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	4 cut(s)	225, 579, 1293, 1764
FalI	AAGNNNNNCTT	2 cut(s)	1002, 1034
FaqI	GGGAC	4 cut(s)	220, 250, 1100, 1823
FauNDI	CATATG	2 cut(s)	510, 658
FbaI	TGATCA	1 cut(s)	1750
FblI	GTMKAC	1 cut(s)	1608
Fnu4HI	GCNGC	8 cut(s)	178, 371, 594, 705, 900, 1016, 1377, 1641
FokI	GGATG	2 cut(s)	352, 628
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	8 cut(s)	178, 371, 594, 705, 900, 1016, 1377, 1641
FspBI	CTAG	2 cut(s)	803, 966
GlaI	GCGC	6 cut(s)	27, 39, 274, 309, 507, 1103
GluI	GCNGC	8 cut(s)	178, 371, 594, 705, 900, 1016, 1377, 1641
GsaI	CCCAGC	1 cut(s)	1166
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	2 cut(s)	41, 276
HaeIII	GGCC	8 cut(s)	170, 212, 358, 458, 566, 578, 593, 953
HapII	CCGG	9 cut(s)	65, 167, 174, 209, 359, 482, 758, 1041, 1839
HgaI	GACGC	5 cut(s)	314, 531, 710, 1561, 1619
HhaI	GCGC	6 cut(s)	28, 40, 275, 310, 508, 1104
Hin1I	GRCGYC	4 cut(s)	5, 344, 702, 1572
Hin6I	GCGC	6 cut(s)	26, 38, 273, 308, 506, 1102
HinP1I	GCGC	6 cut(s)	26, 38, 273, 308, 506, 1102
HindIII	AAGCTT	1 cut(s)	1536
HpaII	CCGG	9 cut(s)	65, 167, 174, 209, 359, 482, 758, 1041, 1839
HphI	GGTGA	3 cut(s)	125, 983, 1663
Hpy166II	GTNNAC	2 cut(s)	776, 1609
Hpy188I	TCNGA	5 cut(s)	162, 849, 1225, 1712, 1798
Hpy188III	TCNNGA	4 cut(s)	82, 1124, 1196, 1542
Hpy8I	GTNNAC	2 cut(s)	776, 1609
Hpy99I	CGWCG	3 cut(s)	125, 431, 547
HpyAV	CCTTC	4 cut(s)	97, 625, 1004, 1105
HpyCH4III	ACNGT	4 cut(s)	524, 870, 1055, 1136
HpyCH4IV	ACGT	2 cut(s)	344, 429
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
HpySE526I	ACGT	2 cut(s)	344, 429
Hsp92I	GRCGYC	4 cut(s)	5, 344, 702, 1572
HspAI	GCGC	6 cut(s)	26, 38, 273, 308, 506, 1102
KroI	GCCGGC	1 cut(s)	1040
KroNI	GCCGGC	1 cut(s)	1042
Ksp22I	TGATCA	1 cut(s)	1750
Kzo9I	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
LmnI	GCTCC	4 cut(s)	106, 159, 473, 1295
Lsp1109I	GCAGC	6 cut(s)	189, 382, 886, 1002, 1363, 1627
LweI	GCATC	4 cut(s)	480, 1060, 1082, 1166
MaeI	CTAG	2 cut(s)	803, 966
MaeII	ACGT	2 cut(s)	344, 429
MaeIII	GTNAC	4 cut(s)	345, 681, 740, 1599
MalI	GATC	6 cut(s)	20, 498, 846, 1421, 1632, 1752
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
MboII	GAAGA	6 cut(s)	662, 1153, 1184, 1250, 1725, 1728
MfeI	CAATTG	1 cut(s)	334
MflI	RGATCY	2 cut(s)	496, 1630
MhlI	GDGCHC	3 cut(s)	111, 1153, 1557
MlsI	TGGCCA	1 cut(s)	953
MluNI	TGGCCA	1 cut(s)	953
MlyI	GAGTC	4 cut(s)	124, 662, 1214, 1310
MmeI	TCCRAC	1 cut(s)	378
Mox20I	TGGCCA	1 cut(s)	953
Mph1103I	ATGCAT	1 cut(s)	1075
MroNI	GCCGGC	1 cut(s)	1040
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	953
MseI	TTAA	3 cut(s)	549, 731, 1821
MslI	CAYNNNNRTG	1 cut(s)	352
Msp20I	TGGCCA	1 cut(s)	953
MspA1I	CMGCKG	2 cut(s)	373, 1276
MspI	CCGG	9 cut(s)	65, 167, 174, 209, 359, 482, 758, 1041, 1839
MspR9I	CCNGG	9 cut(s)	65, 66, 167, 284, 302, 483, 575, 941, 1414
MunI	CAATTG	1 cut(s)	334
MvaI	CCWGG	5 cut(s)	284, 302, 575, 941, 1414
MvnI	CGCG	4 cut(s)	26, 28, 308, 542
MwoI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
NaeI	GCCGGC	1 cut(s)	1042
NciI	CCSGG	4 cut(s)	65, 66, 167, 483
NcoI	CCATGG	1 cut(s)	225
NdeI	CATATG	2 cut(s)	510, 658
NdeII	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
NgoMIV	GCCGGC	1 cut(s)	1040
NlaIV	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
NmuCI	GTSAC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	2 cut(s)	679, 748
PaeI	GCATGC	1 cut(s)	679
PdiI	GCCGGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	7 cut(s)	69, 205, 279, 635, 1127, 1168, 1801
PkrI	GCNGC	8 cut(s)	179, 372, 595, 706, 901, 1017, 1378, 1642
PleI	GAGTC	4 cut(s)	124, 661, 1213, 1310
PpsI	GAGTC	4 cut(s)	124, 661, 1213, 1310
PpuMI	RGGWCCY	1 cut(s)	1114
Psp5II	RGGWCCY	1 cut(s)	1114
Psp6I	CCWGG	5 cut(s)	282, 300, 573, 939, 1412
PspFI	CCCAGC	1 cut(s)	1162
PspGI	CCWGG	5 cut(s)	282, 300, 573, 939, 1412
PspN4I	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
PspPI	GGNCC	5 cut(s)	30, 211, 456, 691, 1114
PspPPI	RGGWCCY	1 cut(s)	1114
PstNI	CAGNNNCTG	4 cut(s)	238, 316, 899, 1812
PsuI	RGATCY	2 cut(s)	496, 1630
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	5 cut(s)	188, 777, 1057, 1189, 1595
RsaNI	GTAC	5 cut(s)	187, 776, 1056, 1188, 1594
RseI	CAYNNNNRTG	1 cut(s)	352
SaqAI	TTAA	3 cut(s)	549, 731, 1821
SatI	GCNGC	8 cut(s)	178, 371, 594, 705, 900, 1016, 1377, 1641
Sau3AI	GATC	6 cut(s)	18, 496, 844, 1419, 1630, 1750
Sau96I	GGNCC	5 cut(s)	30, 211, 456, 691, 1114
ScaI	AGTACT	2 cut(s)	1057, 1189
SchI	GAGTC	4 cut(s)	124, 662, 1214, 1310
ScrFI	CCNGG	9 cut(s)	65, 66, 167, 284, 302, 483, 575, 941, 1414
SduI	GDGCHC	3 cut(s)	111, 1153, 1557
SfaNI	GCATC	4 cut(s)	480, 1060, 1082, 1166
SinI	GGWCC	3 cut(s)	30, 691, 1114
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	451, 560
SmoI	CTYRAG	2 cut(s)	451, 560
SphI	GCATGC	1 cut(s)	679
SsiI	CCGC	9 cut(s)	28, 152, 202, 540, 594, 641, 705, 1274, 1643
SspI	AATATT	1 cut(s)	1395
SspMI	CTAG	2 cut(s)	803, 966
StyD4I	CCNGG	9 cut(s)	63, 64, 165, 282, 300, 481, 573, 939, 1412
StyI	CCWWGG	4 cut(s)	225, 579, 1293, 1764
TaaI	ACNGT	4 cut(s)	524, 870, 1055, 1136
TaiI	ACGT	2 cut(s)	347, 432
TaqI	TCGA	4 cut(s)	123, 378, 609, 1422
TaqII	GACCGA	2 cut(s)	381, 602
TatI	WGTACW	3 cut(s)	186, 1055, 1187
TauI	GCSGC	2 cut(s)	596, 707
TfiI	GAWTC	7 cut(s)	69, 205, 279, 635, 1127, 1168, 1801
Tru1I	TTAA	3 cut(s)	549, 731, 1821
Tru9I	TTAA	3 cut(s)	549, 731, 1821
TseFI	GTSAC	1 cut(s)	345
TseI	GCWGC	6 cut(s)	177, 370, 899, 1015, 1376, 1640
Tsp45I	GTSAC	1 cut(s)	345
TspDTI	ATGAA	5 cut(s)	335, 380, 923, 1023, 1254
TspGWI	ACGGA	1 cut(s)	1309
TspMI	CCCGGG	1 cut(s)	64
VpaK11BI	GGWCC	3 cut(s)	30, 691, 1114
XapI	RAATTY	2 cut(s)	727, 1339
XceI	RCATGY	2 cut(s)	679, 748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 466
XmaI	CCCGGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	1608
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	2 cut(s)	803, 966
ZraI	GACGTC	1 cut(s)	345
ZrmI	AGTACT	2 cut(s)	1057, 1189
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.