Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011116

Physical Location & Seq

Genomic Coordinates Forward (+)

4406941 .. 4410478

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1061800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGCGTCCCAAATGGCGATCCTCGCGCGGACCCGAACGCTGGCCAAAATCCTAAACCCGAACCCGGGATTCAAGTCCATCACAACAGTCACATTTCTCTCCCAGGAGCCTCAACTCGACGTCGAGCCGACTCACCCCATCGCCTCCACCCCTCTCCCTCCGAACCCCGCCTCCGGAAGCCCCATGTACAACGAGAACTGGCGGAATCCGGCACCCAACTCGCCCATGGGTCAGTCCCCGCTTCCCATCGGGTTCCTCAACCAGTCCCCGAGCGCCCGATTCCAGGCCATGTCGCAAAACCTAGACGCGCAGAGCCTAATGAACGAGTTCGCCGGTTGGATGACATCACAGCGATGGCTGGACATGAAGCAGCTGTTCGAGTTCTGGGTTCGGTCGTTGGATAAGAACGGGAAGCCGAATAAGCCCGATGTGAGCTTGTATAACCATTACTTGAGGGCCAATTTGATGATGGGAGCCTCGCCGGGGACGATGCTGGATCTTGTGGCGCATATGGAGGACTACGGCATCACGCCCAACACGGCGTCGTTTAATCTCGTCCTCAAGGCCATGCACCAGGCCAGAGAGACCGAGGCCGCAGATAAATTGCTCGAAAGGATGTTGCAGACAGGGAAGGAATCTCCGCCTGATGAAGAGTCATATGACTTGGTTATCGGCATGCTGTTACAAATGGACCAGATTGACGCCGCCTTGAAATATATAGACTTGAATTTAAAATCTGGTTACATGCTGTCAATGCCGGTGTTTAGAGAATGTGTACGAGGCTGTGTCAATAAGGGAAAACTAGATACTTTGGTTTCAATTATCGACAAGTGCAAGTCAATGGATCAAAACAAAGCTCTTTGCCCTCCATGGAACTTGTGCAACTACATTGCGGAAGTTGCTCTGCAAGAGGATAATAGCAAATTAGCATTTCATGCCCTGGAGTTTATGGCCAAATGGATTGCTAGGGGTGAGCAAGCAAGACCTATTGTTTTTCTTTCTGCAGATGAAGGGCTGCTTGTGTCAGCACTTGCAACTGCCGGCAGGACACACAATACTACTTTACTGGATGCATCATGGGCAATCTTACTACGCTCGTTGCGCCAAAAGAAGGTTCCTAATGCAGAATCTTACCGTGCAAAGATATGTGCCCTTGCATCGCTAGGGAGTCTTCAAAGAGCTTTTAGTACTCTCCGTGAATATGAGGCTGCTTATGGTAATTCCGATAAAGAAGCAGAAGAGGAACTGTTCTCCCCATTTACTTCATTATATCTGCTGGTTGTTGCCTGCTCTAAGGGAGGTTTTGGAACTTTGGACTCGGTGTATTATCAATTAGAAAATTTGAGCCGTGCAGACCCTCCGTACAAATCTGTTGCTGCATTGAATTGCATAATATTAGGTTGTGCAAATACCTGGCAGATTGAGCGTGCTTACCAGACCTTTGAGGCGATTAGTTCTACATTTGAATTGACCCCTGATATACATTCTTACAACGCTCTCATGTATGCTTTTGGAAAGCACAAGCAGACTTTTGAAGCTTCAAGAGTATTTGAGCACTTGGTTAGTGTGGGCGTCAAACCCAATGCAAAGTCGTACTCGTTACTTGTAGACGCTCATCTCATCAACAGAGATCCAAAAGCTGCGGTCTTGGTGATTGATGACATGGTAATTGCTGGTTTTGAACCAACGAAAGAAATGCTGAAAAGGGTCAGAAGAAGATGTAGGCGAGAGCTCGACTATGAGAGTGACGATCATGTTGATACCTTGGCCAAAAGGTTCAAAATTGTGATGGGTTCAGAGAATCGCAGGGACTGGCTGTTCAACCTCAACTACAGCACCGGATATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

617

Amino Acids

69.09

Weight (kDa)

6.45

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	492 - 538	2.2e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26460
fragaria_vesca	FvH4_4g30160 FvH4_4g30160
malus_domestica	MD13G1063400.v1.1 MD16G1061800.v1.1
prunus_persica	Prupe.1G286100_v2.0.a1
pyrus_communis	pycom13g05570 pycom16g05390
rosa_chinensis	RchiOBHm_Chr4g0438491
rosa_laevigata	RLG00000006359
rosa_multiflora	Rmu_sc0002327.1_g000019 Rmu_sc0004398.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379500
rosa_rugosa	Rorug04G0310300
rosa_samantha	Rh4AG361100 Rh4BG372400 Rh4CG386400 Rh4DG367200
rosa_wichuraiana	Rw0G006590 Rw0G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	1608
AccII	CGCG	3 cut(s)	26, 28, 308
AccIII	TCCGGA	1 cut(s)	173
AciI	CCGC	9 cut(s)	28, 168, 202, 239, 594, 641, 705, 893, 1643
AclWI	GGATC	4 cut(s)	13, 504, 852, 1625
AcoI	YGGCCR	3 cut(s)	42, 951, 1767
AcsI	RAATTY	2 cut(s)	727, 1339
AcyI	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
AfaI	GTAC	5 cut(s)	188, 777, 1189, 1364, 1595
AfiI	CCNNNNNNNGG	7 cut(s)	40, 64, 65, 173, 283, 483, 1111
AjnI	CCWGG	5 cut(s)	102, 282, 573, 939, 1412
AjuI	GAANNNNNNNTTGG	2 cut(s)	1098, 1130
AloI	GAACNNNNNNTCC	4 cut(s)	155, 187, 1802, 1834
AluBI	AGCT	7 cut(s)	373, 435, 857, 1181, 1538, 1640, 1732
AluI	AGCT	7 cut(s)	373, 435, 857, 1181, 1538, 1640, 1732
Alw21I	GWGCWC	2 cut(s)	1557, 1734
Alw26I	GTCTC	1 cut(s)	578
AlwI	GGATC	4 cut(s)	13, 504, 852, 1625
AlwNI	CAGNNNCTG	1 cut(s)	1812
Ama87I	CYCGRG	2 cut(s)	64, 268
Aor13HI	TCCGGA	1 cut(s)	173
AoxI	GGCC	8 cut(s)	42, 285, 456, 564, 576, 591, 951, 1767
ApeKI	GCWGC	5 cut(s)	370, 1015, 1208, 1376, 1640
ApoI	RAATTY	2 cut(s)	727, 1339
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	5 cut(s)	28, 275, 310, 508, 1104
AspS9I	GGNCC	3 cut(s)	30, 456, 691
AsuC2I	CCSGG	3 cut(s)	65, 66, 483
AsuHPI	GGTGA	3 cut(s)	125, 983, 1663
AvaI	CYCGRG	2 cut(s)	64, 268
AvaII	GGWCC	2 cut(s)	30, 691
BaeGI	GKGCMC	1 cut(s)	1153
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BalI	TGGCCA	3 cut(s)	44, 953, 1769
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	1734
BbsI	GAAGAC	1 cut(s)	1163
Bbv12I	GWGCWC	2 cut(s)	1557, 1734
BbvI	GCAGC	5 cut(s)	382, 1002, 1195, 1363, 1627
BccI	CCATC	6 cut(s)	86, 146, 254, 348, 463, 1783
BceAI	ACGGC	3 cut(s)	538, 555, 1332
BcgI	CGANNNNNNTGC	4 cut(s)	201, 235, 1678, 1712
BciT130I	CCWGG	5 cut(s)	104, 284, 575, 941, 1414
BcnI	CCSGG	3 cut(s)	65, 66, 483
BcoDI	GTCTC	1 cut(s)	578
BfaI	CTAG	4 cut(s)	302, 803, 966, 1163
BfmI	CTRYAG	2 cut(s)	1002, 1831
BfoI	RGCGCY	1 cut(s)	276
BisI	GCNGC	7 cut(s)	371, 594, 705, 1016, 1209, 1377, 1641
BlsI	GCNGC	7 cut(s)	372, 595, 706, 1017, 1210, 1378, 1642
BmcAI	AGTACT	1 cut(s)	1189
Bme1390I	CCNGG	8 cut(s)	65, 66, 104, 284, 483, 575, 941, 1414
Bme18I	GGWCC	2 cut(s)	30, 691
BmeT110I	CYCGRG	2 cut(s)	64, 268
BmgT120I	GGNCC	3 cut(s)	30, 456, 691
BmiI	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
BmrFI	CCNGG	8 cut(s)	65, 66, 104, 284, 483, 575, 941, 1414
BmsI	GCATC	5 cut(s)	480, 534, 1060, 1082, 1166
BpiI	GAAGAC	1 cut(s)	1163
BpmI	CTGGAG	1 cut(s)	962
BpuEI	CTTGAG	2 cut(s)	472, 545
BpuMI	CCSGG	3 cut(s)	65, 66, 483
BsaHI	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	8 cut(s)	64, 102, 225, 482, 588, 869, 939, 1764
BsaWI	WCCGGW	2 cut(s)	173, 1838
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	7 cut(s)	40, 64, 65, 173, 283, 483, 1111
Bse118I	RCCGGY	3 cut(s)	332, 757, 1040
Bse1I	ACTGG	4 cut(s)	203, 262, 1071, 1817
Bse3DI	GCAATG	1 cut(s)	888
BseAI	TCCGGA	1 cut(s)	173
BseBI	CCWGG	5 cut(s)	104, 284, 575, 941, 1414
BseDI	CCNNGG	8 cut(s)	64, 102, 225, 482, 588, 869, 939, 1764
BseGI	GGATG	3 cut(s)	345, 621, 1075
BseLI	CCNNNNNNNGG	7 cut(s)	40, 64, 65, 173, 283, 483, 1111
BseMI	GCAATG	1 cut(s)	888
BseNI	ACTGG	4 cut(s)	203, 262, 1071, 1817
BseSI	GKGCMC	1 cut(s)	1153
BseXI	GCAGC	5 cut(s)	382, 1002, 1195, 1363, 1627
BsgI	GTGCAG	1 cut(s)	1371
Bsh1236I	CGCG	3 cut(s)	26, 28, 308
Bsh1285I	CGRYCG	1 cut(s)	395
BshFI	GGCC	8 cut(s)	44, 287, 458, 566, 578, 593, 953, 1769
BshNI	GGYRCC	1 cut(s)	211
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	2 cut(s)	1557, 1734
BsiHKCI	CYCGRG	2 cut(s)	64, 268
BsiSI	CCGG	8 cut(s)	65, 174, 209, 333, 482, 758, 1041, 1839
BslFI	GGGAC	4 cut(s)	220, 250, 499, 1823
BslI	CCNNNNNNNGG	7 cut(s)	40, 64, 65, 173, 283, 483, 1111
BsmAI	GTCTC	1 cut(s)	578
BsmFI	GGGAC	4 cut(s)	220, 250, 499, 1823
BsnI	GGCC	8 cut(s)	44, 287, 458, 566, 578, 593, 953, 1769
Bso31I	GGTCTC	1 cut(s)	578
BsoBI	CYCGRG	2 cut(s)	64, 268
Bsp1286I	GDGCHC	3 cut(s)	1153, 1557, 1734
Bsp13I	TCCGGA	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	5 cut(s)	18, 496, 844, 1630, 1750
Bsp19I	CCATGG	2 cut(s)	225, 869
BspACI	CCGC	9 cut(s)	28, 168, 202, 239, 594, 641, 705, 893, 1643
BspANI	GGCC	8 cut(s)	44, 287, 458, 566, 578, 593, 953, 1769
BspEI	TCCGGA	1 cut(s)	173
BspFNI	CGCG	3 cut(s)	26, 28, 308
BspLI	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	4 cut(s)	13, 504, 852, 1625
BspT107I	GGYRCC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	578
BsrDI	GCAATG	1 cut(s)	888
BsrFI	RCCGGY	3 cut(s)	332, 757, 1040
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	4 cut(s)	203, 262, 1071, 1817
BssAI	RCCGGY	3 cut(s)	332, 757, 1040
BssECI	CCNNGG	8 cut(s)	64, 102, 225, 482, 588, 869, 939, 1764
BssMI	GATC	5 cut(s)	18, 496, 844, 1630, 1750
BssNI	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
BssT1I	CCWWGG	3 cut(s)	225, 869, 1764
Bst2UI	CCWGG	5 cut(s)	104, 284, 575, 941, 1414
Bst4CI	ACNGT	3 cut(s)	88, 1136, 1248
Bst6I	CTCTTC	2 cut(s)	645, 1233
BstACI	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	6 cut(s)	42, 677, 978, 1042, 1288, 1428
BstDEI	CTNAG	1 cut(s)	1293
BstDSI	CCRYGG	2 cut(s)	225, 869
BstF5I	GGATG	3 cut(s)	345, 621, 1075
BstFNI	CGCG	3 cut(s)	26, 28, 308
BstH2I	RGCGCY	1 cut(s)	276
BstHHI	GCGC	5 cut(s)	28, 275, 310, 508, 1104
BstKTI	GATC	5 cut(s)	21, 499, 847, 1633, 1753
BstMAI	GTCTC	1 cut(s)	578
BstMBI	GATC	5 cut(s)	18, 496, 844, 1630, 1750
BstMCI	CGRYCG	1 cut(s)	395
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
BstNI	CCWGG	5 cut(s)	104, 284, 575, 941, 1414
BstNSI	RCATGY	2 cut(s)	679, 748
BstSCI	CCNGG	8 cut(s)	63, 64, 102, 282, 481, 573, 939, 1412
BstSFI	CTRYAG	2 cut(s)	1002, 1831
BstSLI	GKGCMC	1 cut(s)	1153
BstUI	CGCG	3 cut(s)	26, 28, 308
BstV1I	GCAGC	5 cut(s)	382, 1002, 1195, 1363, 1627
BstV2I	GAAGAC	1 cut(s)	1163
BstX2I	RGATCY	2 cut(s)	496, 1630
BstYI	RGATCY	2 cut(s)	496, 1630
BsuRI	GGCC	8 cut(s)	44, 287, 458, 566, 578, 593, 953, 1769
BtgI	CCRYGG	2 cut(s)	225, 869
BtgZI	GCGATG	3 cut(s)	124, 367, 1143
BtsCI	GGATG	3 cut(s)	345, 621, 1075
Cac8I	GCNNGC	6 cut(s)	42, 677, 978, 1042, 1288, 1428
CaiI	CAGNNNCTG	1 cut(s)	1812
CfoI	GCGC	5 cut(s)	28, 275, 310, 508, 1104
Cfr10I	RCCGGY	3 cut(s)	332, 757, 1040
Cfr13I	GGNCC	3 cut(s)	30, 456, 691
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	5 cut(s)	314, 531, 710, 1561, 1619
Csp6I	GTAC	5 cut(s)	187, 776, 1188, 1363, 1594
CviQI	GTAC	5 cut(s)	187, 776, 1188, 1363, 1594
DdeI	CTNAG	1 cut(s)	1293
DpnI	GATC	5 cut(s)	20, 498, 846, 1632, 1752
DpnII	GATC	5 cut(s)	18, 496, 844, 1630, 1750
DraI	TTTAAA	1 cut(s)	732
EaeI	YGGCCR	3 cut(s)	42, 951, 1767
Eam1104I	CTCTTC	2 cut(s)	645, 1233
EarI	CTCTTC	2 cut(s)	645, 1233
EciI	GGCGGA	2 cut(s)	217, 630
Ecl136II	GAGCTC	1 cut(s)	1732
Eco130I	CCWWGG	3 cut(s)	225, 869, 1764
Eco24I	GRGCYC	1 cut(s)	1734
Eco31I	GGTCTC	1 cut(s)	578
Eco47I	GGWCC	2 cut(s)	30, 691
Eco53kI	GAGCTC	1 cut(s)	1732
Eco88I	CYCGRG	2 cut(s)	64, 268
EcoICRI	GAGCTC	1 cut(s)	1732
EcoRII	CCWGG	5 cut(s)	102, 282, 573, 939, 1412
EcoT14I	CCWWGG	3 cut(s)	225, 869, 1764
EcoT22I	ATGCAT	1 cut(s)	1075
EcoT38I	GRGCYC	1 cut(s)	1734
ErhI	CCWWGG	3 cut(s)	225, 869, 1764
FalI	AAGNNNNNCTT	2 cut(s)	1002, 1034
FaqI	GGGAC	4 cut(s)	220, 250, 499, 1823
FauI	CCCGC	2 cut(s)	175, 246
FauNDI	CATATG	2 cut(s)	510, 658
FblI	GTMKAC	1 cut(s)	1608
Fnu4HI	GCNGC	7 cut(s)	371, 594, 705, 1016, 1209, 1377, 1641
FokI	GGATG	3 cut(s)	352, 628, 1082
FriOI	GRGCYC	1 cut(s)	1734
Fsp4HI	GCNGC	7 cut(s)	371, 594, 705, 1016, 1209, 1377, 1641
FspBI	CTAG	4 cut(s)	302, 803, 966, 1163
GlaI	GCGC	5 cut(s)	27, 274, 309, 507, 1103
GluI	GCNGC	7 cut(s)	371, 594, 705, 1016, 1209, 1377, 1641
GsuI	CTGGAG	1 cut(s)	962
HaeII	RGCGCY	1 cut(s)	276
HaeIII	GGCC	8 cut(s)	44, 287, 458, 566, 578, 593, 953, 1769
HapII	CCGG	8 cut(s)	65, 174, 209, 333, 482, 758, 1041, 1839
HgaI	GACGC	5 cut(s)	314, 531, 710, 1561, 1619
HhaI	GCGC	5 cut(s)	28, 275, 310, 508, 1104
Hin1I	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
Hin6I	GCGC	5 cut(s)	26, 273, 308, 506, 1102
HinP1I	GCGC	5 cut(s)	26, 273, 308, 506, 1102
HindIII	AAGCTT	1 cut(s)	1536
HpaII	CCGG	8 cut(s)	65, 174, 209, 333, 482, 758, 1041, 1839
HphI	GGTGA	3 cut(s)	125, 983, 1663
Hpy166II	GTNNAC	2 cut(s)	776, 1609
Hpy188I	TCNGA	4 cut(s)	162, 1225, 1712, 1798
Hpy188III	TCNNGA	2 cut(s)	174, 1542
Hpy8I	GTNNAC	2 cut(s)	776, 1609
Hpy99I	CGWCG	3 cut(s)	122, 125, 547
HpyAV	CCTTC	3 cut(s)	625, 1004, 1105
HpyCH4III	ACNGT	3 cut(s)	88, 1136, 1248
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
HpyF3I	CTNAG	1 cut(s)	1293
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	5 cut(s)	5, 120, 542, 702, 1572
HspAI	GCGC	5 cut(s)	26, 273, 308, 506, 1102
Kpn2I	TCCGGA	1 cut(s)	173
KroI	GCCGGC	1 cut(s)	1040
KroNI	GCCGGC	1 cut(s)	1042
Kzo9I	GATC	5 cut(s)	18, 496, 844, 1630, 1750
LmnI	GCTCC	2 cut(s)	106, 473
Lsp1109I	GCAGC	5 cut(s)	382, 1002, 1195, 1363, 1627
LweI	GCATC	5 cut(s)	480, 534, 1060, 1082, 1166
MaeI	CTAG	4 cut(s)	302, 803, 966, 1163
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	5 cut(s)	88, 681, 740, 1599, 1745
MalI	GATC	5 cut(s)	20, 498, 846, 1632, 1752
MboI	GATC	5 cut(s)	18, 496, 844, 1630, 1750
MboII	GAAGA	5 cut(s)	662, 1163, 1250, 1725, 1728
MflI	RGATCY	2 cut(s)	496, 1630
MhlI	GDGCHC	3 cut(s)	1153, 1557, 1734
MlsI	TGGCCA	3 cut(s)	44, 953, 1769
MluNI	TGGCCA	3 cut(s)	44, 953, 1769
MlyI	GAGTC	4 cut(s)	124, 662, 1177, 1310
MmeI	TCCRAC	2 cut(s)	317, 378
Mox20I	TGGCCA	3 cut(s)	44, 953, 1769
Mph1103I	ATGCAT	1 cut(s)	1075
MroI	TCCGGA	1 cut(s)	173
MroNI	GCCGGC	1 cut(s)	1040
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	3 cut(s)	44, 953, 1769
MseI	TTAA	2 cut(s)	549, 731
MslI	CAYNNNNRTG	1 cut(s)	352
Msp20I	TGGCCA	3 cut(s)	44, 953, 1769
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	8 cut(s)	65, 174, 209, 333, 482, 758, 1041, 1839
MspR9I	CCNGG	8 cut(s)	65, 66, 104, 284, 483, 575, 941, 1414
MvaI	CCWGG	5 cut(s)	104, 284, 575, 941, 1414
MvnI	CGCG	3 cut(s)	26, 28, 308
MwoI	GCNNNNNNNGC	8 cut(s)	23, 421, 754, 899, 935, 1079, 1101, 1423
NaeI	GCCGGC	1 cut(s)	1042
NciI	CCSGG	3 cut(s)	65, 66, 483
NcoI	CCATGG	2 cut(s)	225, 869
NdeI	CATATG	2 cut(s)	510, 658
NdeII	GATC	5 cut(s)	18, 496, 844, 1630, 1750
NgoMIV	GCCGGC	1 cut(s)	1040
NlaIV	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
NmuCI	GTSAC	2 cut(s)	88, 1745
NsiI	ATGCAT	1 cut(s)	1075
NspI	RCATGY	2 cut(s)	679, 748
PaeI	GCATGC	1 cut(s)	679
PcsI	WCGNNNNNNNCGW	1 cut(s)	485
PdiI	GCCGGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	6 cut(s)	69, 205, 279, 635, 1127, 1801
PkrI	GCNGC	7 cut(s)	372, 595, 706, 1017, 1210, 1378, 1642
PleI	GAGTC	4 cut(s)	124, 661, 1176, 1310
PpsI	GAGTC	4 cut(s)	124, 661, 1176, 1310
Psp124BI	GAGCTC	1 cut(s)	1734
Psp6I	CCWGG	5 cut(s)	102, 282, 573, 939, 1412
PspGI	CCWGG	5 cut(s)	102, 282, 573, 939, 1412
PspN4I	GGNNCC	6 cut(s)	32, 108, 213, 254, 475, 1116
PspPI	GGNCC	3 cut(s)	30, 456, 691
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	1812
PsuI	RGATCY	2 cut(s)	496, 1630
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	5 cut(s)	188, 777, 1189, 1364, 1595
RsaNI	GTAC	5 cut(s)	187, 776, 1188, 1363, 1594
RseI	CAYNNNNRTG	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	1734
SaqAI	TTAA	2 cut(s)	549, 731
SatI	GCNGC	7 cut(s)	371, 594, 705, 1016, 1209, 1377, 1641
Sau3AI	GATC	5 cut(s)	18, 496, 844, 1630, 1750
Sau96I	GGNCC	3 cut(s)	30, 456, 691
ScaI	AGTACT	1 cut(s)	1189
SchI	GAGTC	4 cut(s)	124, 662, 1177, 1310
ScrFI	CCNGG	8 cut(s)	65, 66, 104, 284, 483, 575, 941, 1414
SduI	GDGCHC	3 cut(s)	1153, 1557, 1734
SfaNI	GCATC	5 cut(s)	480, 534, 1060, 1082, 1166
SfcI	CTRYAG	2 cut(s)	1002, 1831
SinI	GGWCC	2 cut(s)	30, 691
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	352
SmlI	CTYRAG	2 cut(s)	451, 560
SmoI	CTYRAG	2 cut(s)	451, 560
SphI	GCATGC	1 cut(s)	679
SsiI	CCGC	9 cut(s)	28, 168, 202, 239, 594, 641, 705, 893, 1643
SspI	AATATT	1 cut(s)	1395
SspMI	CTAG	4 cut(s)	302, 803, 966, 1163
SstI	GAGCTC	1 cut(s)	1734
StyD4I	CCNGG	8 cut(s)	63, 64, 102, 282, 481, 573, 939, 1412
StyI	CCWWGG	3 cut(s)	225, 869, 1764
TaaI	ACNGT	3 cut(s)	88, 1136, 1248
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	6 cut(s)	117, 123, 378, 609, 825, 1734
TaqII	GACCGA	2 cut(s)	381, 602
TatI	WGTACW	2 cut(s)	186, 1187
TauI	GCSGC	2 cut(s)	596, 707
TfiI	GAWTC	6 cut(s)	69, 205, 279, 635, 1127, 1801
Tru1I	TTAA	2 cut(s)	549, 731
Tru9I	TTAA	2 cut(s)	549, 731
TseFI	GTSAC	2 cut(s)	88, 1745
TseI	GCWGC	5 cut(s)	370, 1015, 1208, 1376, 1640
Tsp45I	GTSAC	2 cut(s)	88, 1745
TspDTI	ATGAA	6 cut(s)	335, 380, 663, 923, 1023, 1254
TspGWI	ACGGA	2 cut(s)	1184, 1350
TspMI	CCCGGG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	30, 691
XapI	RAATTY	2 cut(s)	727, 1339
XceI	RCATGY	2 cut(s)	679, 748
XcmI	CCANNNNNNNNNTGG	2 cut(s)	223, 466
XmaI	CCCGGG	1 cut(s)	64
XmiI	GTMKAC	1 cut(s)	1608
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	4 cut(s)	302, 803, 966, 1163
ZraI	GACGTC	1 cut(s)	121
ZrmI	AGTACT	1 cut(s)	1189
Zsp2I	ATGCAT	1 cut(s)	1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.