Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011116

Physical Location & Seq

Genomic Coordinates Reverse (-)

48553964 .. 48557629

Gene Structure 3666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0310300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGGGAGAGAAAACAGTGAGGACGGAGGATGTGGGGACTGGAGATAAGACGGGAGAGATGCGCCGGGTAGACTCCCTCAATATCGAGGCCGGAAAAGTTTCCGGTTATCAAGGTCATGGAGCAAAGCATAGTTGGAAGACCACGTTGAGTTTAGCAATACAAAGCGTGGGGGTTGTGTATGGGGACATAGGGACTTCTCCACTCTATGTGTACTCGAGCACTTTCCCTGATGGTATTAAAGAAAAGGATGACATTCTAGGGGTGATGTCTATCATCATTTATACCATTTTCTTGGTGCCTTTGCTCAAGTATGTCTTCATCGTCTTGTGGGCCAATGACAATGGGGAAGGTGGAACATTTGCAATGTATTCTTTGATTTGCCGGCATGCAAAGGTGAGCTTAGTCCCAAATAACCAGCCAGAGGATAGGGAGATATCCAACTACAAACTCGACAGACCGTCGAGTGAGTTGAAACGAGCCCAAGCCATCAAGAAGAAGCTGGAGAATAGTAGACTTGTCCAGTATGTTCTTTTTGTTATCACCATTACCGGAACTTCCATGGTAATCGGAGATGGTGTTCTTACTCCATGCATTTCAGTTCTTTCAGCGGTGAGCGGGTTGCAGAACGGGATCAAGTCACTAGACCAAAGAGCTGTTGTGGGGATTTCTATAGCAATCTTGATCCTTCTTTTCGCCGTTCAACAGTTTGGGACTGATAAAGTGGGCTTCACTTTTGCTCCTATTATCTTGTTGTGGTTTCTGTTCCTGACTGGGATTGGACTTTACAACTTGATCACTTACGACATTACTGTATTGAAAGCTTTCAATCCAATGTACATCGTGACATATTTTCAGAGAAATGGAAAAGCTGCTTGGGTTTCCCTTGGGGGAGCAGTTCTCTGCATAACCGGGACTGAAGCCATGTTTGCTGATCTGGGTCACTTCAGTGTTCGAGCAATCCAAATCAGTTTCACTTGTTTCACATTTCCCACAATAGTCATCGCTTATCTTGGGCAATCGGCATACCTCGCCAAGCACCCAGGAGATGTGGCAACCACTTTCTACGCCTCAATACCAAAACCTCTATACTGGCCAACATTCGTTGTAGCCGTACTTGCTGCCATCATTGCGAGCCAAGCTTTGATTACTGGAACATTCTCAATCATCGCACAGTCCTTGGGCTTGGGTTGCTTCCCTAGAGTCAAGATTGTTCACACCTCTGCCAAGAACGAGGGCCAAGTCTACATTCCTGAGATTAACTACCTGCTCATGATCGCCTGCGTGATCATCACCGCCTATTTCAAAACCACTGAGAAAATCGGTAATGCTTATGGAATCGCGGTGGTCAGTGTCATGATAATCACAACGTGTATGATCACTCTAATCATGTTAGTCATATGGAAGACCAGCATCTTTCTGATTGCCATCTTCTTCGTGGTGTTCATTGCAATCGAAGGGGTTTACCTATCTTCGGTCCTCTTCAAATTCGTGGATGGAGGTTACCTTCCTTTGTTATTCTCTGCGGTTCTCATGGTGATCATGGCAATTTGGCATTACGTGCACAAAGAAAGTTACATGTTTGAGGTCAAGAATAAGGTCTCTACCGAATACATGAAGCAATTGGCCTCAAACCCCGACATACACCGCATCCCTGGAATGGGGTTTTTGTATTCGGATCTCGTTCAGGGCGTTCCTCCCATATTTTCTCACTTTGTTTCCAACATACCTTCAGTACACTCTGTTGTGGTTATAGTGACCATCAAGCCGCTCCCGGTGAGCAAAGTCTTAGCAGAGGAGAGGTTCATTTTTAGACAGTTGGAGCCGAAGGAGTACAGAATGTTCCGTTGCGTTGCGAGGTATGGCTACAATGACTTGGTGGAGGGACCAAAAGAGTTCGAGCAGCTGCTGGTGGAGAATCTGAAGGAGTTCATCAGAATGAAAGGTGTGATGAGCGAAGGAAATTCGACAAACAGTTATGAGGAGGAAATGCAATTCGTTCAAGAGGCGATGGACAAAGGGGTTGTTTATCTGATGGGGGAGGCACAAGTAGTGGCAGAAGAGAAGTCCACTTGGTTCAAGAAGATTGTTGTCAACTACATCTACGATTTCTTGAGGAAAAACTTTAGGCAAAGTGACAAGATCTTGGCAATCCCTCGAACCAAGCTTCTTAGGGTTGGAATGACCTATGACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

731

Amino Acids

81.55

Weight (kDa)

8.67

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K_trans	PF02705	51 - 537	5e-166	K+ potassium transporter integral membrane domain
K_trans_C	PF22776	551 - 731	1.4e-27	K+ potassium transporter C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26460
fragaria_vesca	FvH4_4g30160 FvH4_4g30160
malus_domestica	MD13G1063400.v1.1 MD16G1061800.v1.1
prunus_persica	Prupe.1G286100_v2.0.a1
pyrus_communis	pycom13g05570 pycom16g05390
rosa_chinensis	RchiOBHm_Chr4g0438491
rosa_laevigata	RLG00000006359
rosa_multiflora	Rmu_sc0002327.1_g000019 Rmu_sc0004398.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379500
rosa_rugosa	Rorug04G0310300
rosa_samantha	Rh4AG361100 Rh4BG372400 Rh4CG386400 Rh4DG367200
rosa_wichuraiana	Rw0G006590 Rw0G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1272
AccB1I	GGYRCC	1 cut(s)	295
AccBSI	CCGCTC	2 cut(s)	615, 1768
AccI	GTMKAC	3 cut(s)	69, 511, 1242
AccII	CGCG	1 cut(s)	1340
AciI	CCGC	7 cut(s)	608, 615, 1293, 1340, 1523, 1645, 1766
AclWI	GGATC	3 cut(s)	638, 676, 1683
AcoI	YGGCCR	1 cut(s)	1091
AcsI	RAATTY	2 cut(s)	1484, 1960
AcuI	CTGAAG	4 cut(s)	928, 936, 1713, 1940
AdeI	CACNNNGTG	1 cut(s)	1368
AfaI	GTAC	5 cut(s)	212, 836, 1113, 1734, 1832
AfiI	CCNNNNNNNGG	4 cut(s)	421, 1471, 1657, 1658
AflIII	ACRYGT	2 cut(s)	1367, 1575
AgsI	TTSAA	8 cut(s)	472, 701, 817, 826, 1303, 1483, 2000, 2077
AhdI	GACNNNNNGTC	1 cut(s)	457
AjnI	CCWGG	2 cut(s)	1039, 1651
AjuI	GAANNNNNNNTTGG	4 cut(s)	856, 888, 1230, 1262
AleI	CACNNNNGTG	1 cut(s)	945
AloI	GAACNNNNNNTCC	2 cut(s)	561, 593
AluBI	AGCT	8 cut(s)	399, 499, 653, 821, 869, 1139, 1903, 2164
AluI	AGCT	8 cut(s)	399, 499, 653, 821, 869, 1139, 1903, 2164
Alw21I	GWGCWC	2 cut(s)	221, 1563
Alw26I	GTCTC	1 cut(s)	1603
Alw44I	GTGCAC	1 cut(s)	1559
AlwI	GGATC	3 cut(s)	638, 676, 1683
AlwNI	CAGNNNCTG	1 cut(s)	1906
Ama87I	CYCGRG	1 cut(s)	214
AoxI	GGCC	5 cut(s)	87, 330, 1091, 1234, 1623
ApaLI	GTGCAC	1 cut(s)	1559
ApeKI	GCWGC	4 cut(s)	869, 1118, 1900, 1903
ApoI	RAATTY	2 cut(s)	1484, 1960
Asp700I	GAANNNNTTC	3 cut(s)	97, 821, 1925
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	4 cut(s)	330, 1234, 1474, 1883
AsuC2I	CCSGG	3 cut(s)	65, 910, 1772
AsuHPI	GGTGA	7 cut(s)	274, 406, 532, 622, 1282, 1546, 1786
AvaI	CYCGRG	1 cut(s)	214
AvaII	GGWCC	2 cut(s)	1474, 1883
BaeGI	GKGCMC	1 cut(s)	1563
BalI	TGGCCA	1 cut(s)	1093
BanI	GGYRCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	481
BbsI	GAAGAC	3 cut(s)	143, 307, 1409
Bbv12I	GWGCWC	2 cut(s)	221, 1563
BbvI	GCAGC	4 cut(s)	856, 1105, 1890, 1912
BccI	CCATC	9 cut(s)	224, 494, 566, 1130, 1433, 1487, 1766, 2002, 2026
BceAI	ACGGC	2 cut(s)	680, 1094
BciT130I	CCWGG	2 cut(s)	1041, 1653
BclI	TGATCA	4 cut(s)	792, 1284, 1374, 1536
BcnI	CCSGG	3 cut(s)	65, 910, 1772
BcoDI	GTCTC	1 cut(s)	1603
BfaI	CTAG	3 cut(s)	257, 641, 1197
BfmI	CTRYAG	1 cut(s)	669
BfuAI	ACCTGC	1 cut(s)	1272
BglII	AGATCT	1 cut(s)	2139
BisI	GCNGC	5 cut(s)	870, 1119, 1766, 1901, 1904
BlsI	GCNGC	5 cut(s)	871, 1120, 1767, 1902, 1905
Bme1390I	CCNGG	5 cut(s)	65, 910, 1041, 1653, 1772
Bme18I	GGWCC	2 cut(s)	1474, 1883
BmeRI	GACNNNNNGTC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	214
BmgT120I	GGNCC	4 cut(s)	330, 1234, 1474, 1883
BmiI	GGNNCC	3 cut(s)	297, 1821, 1884
BmrFI	CCNGG	5 cut(s)	65, 910, 1041, 1653, 1772
BmrI	ACTGGG	1 cut(s)	780
BmsI	GCATC	3 cut(s)	48, 1419, 1656
BmuI	ACTGGG	1 cut(s)	780
BpiI	GAAGAC	3 cut(s)	143, 307, 1409
BplI	GAGNNNNNCTC	2 cut(s)	882, 914
BpmI	CTGGAG	2 cut(s)	60, 521
BpuEI	CTTGAG	2 cut(s)	290, 2131
BpuMI	CCSGG	3 cut(s)	65, 910, 1772
BsaAI	YACGTR	1 cut(s)	1558
BsaBI	GATNNNNATC	2 cut(s)	269, 1424
BsaI	GGTCTC	1 cut(s)	1603
BsaJI	CCNNGG	5 cut(s)	558, 883, 1039, 1176, 1651
BsaWI	WCCGGW	2 cut(s)	101, 548
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 721, 751
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 1471, 1657, 1658
Bse118I	RCCGGY	1 cut(s)	381
Bse1I	ACTGG	5 cut(s)	43, 520, 775, 1094, 1153
Bse3DI	GCAATG	3 cut(s)	369, 1125, 1443
Bse8I	GATNNNNATC	2 cut(s)	269, 1424
BseBI	CCWGG	2 cut(s)	1041, 1653
BseDI	CCNNGG	5 cut(s)	558, 883, 1039, 1176, 1651
BseGI	GGATG	4 cut(s)	34, 253, 1498, 1647
BseJI	GATNNNNATC	2 cut(s)	269, 1424
BseLI	CCNNNNNNNGG	4 cut(s)	421, 1471, 1657, 1658
BseMI	GCAATG	3 cut(s)	369, 1125, 1443
BseMII	CTCAG	2 cut(s)	1242, 1302
BseNI	ACTGG	5 cut(s)	43, 520, 775, 1094, 1153
BseRI	GAGGAG	2 cut(s)	1808, 1994
BseSI	GKGCMC	1 cut(s)	1563
BseXI	GCAGC	4 cut(s)	856, 1105, 1890, 1912
Bsh1236I	CGCG	1 cut(s)	1340
BshFI	GGCC	5 cut(s)	89, 332, 1093, 1236, 1625
BshNI	GGYRCC	1 cut(s)	295
BsiHKAI	GWGCWC	2 cut(s)	221, 1563
BsiHKCI	CYCGRG	1 cut(s)	214
BsiSI	CCGG	7 cut(s)	64, 90, 102, 382, 549, 909, 1772
BslFI	GGGAC	7 cut(s)	49, 197, 205, 389, 724, 925, 1896
BslI	CCNNNNNNNGG	4 cut(s)	421, 1471, 1657, 1658
BsmAI	GTCTC	1 cut(s)	1603
BsmFI	GGGAC	7 cut(s)	49, 197, 205, 389, 724, 925, 1896
BsnI	GGCC	5 cut(s)	89, 332, 1093, 1236, 1625
Bso31I	GGTCTC	1 cut(s)	1603
BsoBI	CYCGRG	1 cut(s)	214
Bsp1286I	GDGCHC	3 cut(s)	221, 481, 1563
Bsp1407I	TGTACA	1 cut(s)	834
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	7 cut(s)	608, 615, 1293, 1340, 1523, 1645, 1766
BspANI	GGCC	5 cut(s)	89, 332, 1093, 1236, 1625
BspCNI	CTCAG	2 cut(s)	1243, 1303
BspFNI	CGCG	1 cut(s)	1340
BspHI	TCATGA	2 cut(s)	1269, 1353
BspLI	GGNNCC	3 cut(s)	297, 1821, 1884
BspMI	ACCTGC	1 cut(s)	1272
BspPI	GGATC	3 cut(s)	638, 676, 1683
BspT107I	GGYRCC	1 cut(s)	295
BspTNI	GGTCTC	1 cut(s)	1603
BsrBI	CCGCTC	2 cut(s)	615, 1768
BsrDI	GCAATG	3 cut(s)	369, 1125, 1443
BsrFI	RCCGGY	1 cut(s)	381
BsrGI	TGTACA	1 cut(s)	834
BsrI	ACTGG	5 cut(s)	43, 520, 775, 1094, 1153
BssAI	RCCGGY	1 cut(s)	381
BssECI	CCNNGG	5 cut(s)	558, 883, 1039, 1176, 1651
BssT1I	CCWWGG	3 cut(s)	558, 883, 1176
Bst2UI	CCWGG	2 cut(s)	1041, 1653
Bst4CI	ACNGT	7 cut(s)	16, 459, 705, 811, 1173, 1815, 1973
Bst6I	CTCTTC	2 cut(s)	1484, 2052
BstAPI	GCANNNNNTGC	1 cut(s)	1558
BstAUI	TGTACA	1 cut(s)	834
BstBAI	YACGTR	1 cut(s)	1558
BstC8I	GCNNGC	4 cut(s)	383, 387, 1132, 1279
BstDEI	CTNAG	5 cut(s)	400, 1251, 1311, 1786, 2168
BstDSI	CCRYGG	1 cut(s)	558
BstEII	GGTNACC	1 cut(s)	1499
BstF5I	GGATG	4 cut(s)	34, 253, 1498, 1647
BstFNI	CGCG	1 cut(s)	1340
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	1603
BstMWI	GCNNNNNNNGC	7 cut(s)	926, 1028, 1115, 1127, 1136, 1188, 1558
BstNI	CCWGG	2 cut(s)	1041, 1653
BstNSI	RCATGY	2 cut(s)	389, 1579
BstPI	GGTNACC	1 cut(s)	1499
BstSCI	CCNGG	5 cut(s)	63, 908, 1039, 1651, 1770
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	1 cut(s)	1563
BstUI	CGCG	1 cut(s)	1340
BstV1I	GCAGC	4 cut(s)	856, 1105, 1890, 1912
BstV2I	GAAGAC	3 cut(s)	143, 307, 1409
BstX2I	RGATCY	2 cut(s)	1675, 2139
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	2 cut(s)	1675, 2139
BsuRI	GGCC	5 cut(s)	89, 332, 1093, 1236, 1625
BtgI	CCRYGG	1 cut(s)	558
BtgZI	GCGATG	3 cut(s)	985, 1150, 2021
BtsCI	GGATG	4 cut(s)	34, 253, 1498, 1647
BtsIMutI	CAGTG	4 cut(s)	21, 952, 1308, 1354
BveI	ACCTGC	1 cut(s)	1272
Cac8I	GCNNGC	4 cut(s)	383, 387, 1132, 1279
CaiI	CAGNNNCTG	1 cut(s)	1906
CciI	TCATGA	2 cut(s)	1269, 1353
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	381
Cfr13I	GGNCC	4 cut(s)	330, 1234, 1474, 1883
Csp6I	GTAC	5 cut(s)	211, 835, 1112, 1733, 1831
CviQI	GTAC	5 cut(s)	211, 835, 1112, 1733, 1831
DdeI	CTNAG	5 cut(s)	400, 1251, 1311, 1786, 2168
DraIII	CACNNNGTG	1 cut(s)	1368
DriI	GACNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	1091
Eam1104I	CTCTTC	2 cut(s)	1484, 2052
Eam1105I	GACNNNNNGTC	1 cut(s)	457
EarI	CTCTTC	2 cut(s)	1484, 2052
Eco130I	CCWWGG	3 cut(s)	558, 883, 1176
Eco24I	GRGCYC	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	1603
Eco32I	GATATC	1 cut(s)	435
Eco47I	GGWCC	2 cut(s)	1474, 1883
Eco57I	CTGAAG	4 cut(s)	928, 936, 1713, 1940
Eco88I	CYCGRG	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	1499
EcoO65I	GGTNACC	1 cut(s)	1499
EcoRII	CCWGG	2 cut(s)	1039, 1651
EcoRV	GATATC	1 cut(s)	435
EcoT14I	CCWWGG	3 cut(s)	558, 883, 1176
EcoT22I	ATGCAT	1 cut(s)	593
EcoT38I	GRGCYC	1 cut(s)	481
ErhI	CCWWGG	3 cut(s)	558, 883, 1176
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 383, 415
FaqI	GGGAC	7 cut(s)	49, 197, 205, 389, 724, 925, 1896
FauI	CCCGC	1 cut(s)	608
FauNDI	CATATG	1 cut(s)	1397
FbaI	TGATCA	4 cut(s)	792, 1284, 1374, 1536
FblI	GTMKAC	3 cut(s)	69, 511, 1242
Fnu4HI	GCNGC	5 cut(s)	870, 1119, 1766, 1901, 1904
FokI	GGATG	4 cut(s)	41, 260, 1505, 1634
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	5 cut(s)	870, 1119, 1766, 1901, 1904
FspBI	CTAG	3 cut(s)	257, 641, 1197
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	5 cut(s)	870, 1119, 1766, 1901, 1904
GsuI	CTGGAG	2 cut(s)	60, 521
HaeIII	GGCC	5 cut(s)	89, 332, 1093, 1236, 1625
HapII	CCGG	7 cut(s)	64, 90, 102, 382, 549, 909, 1772
HhaI	GCGC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	2092
HindII	GTYRAC	1 cut(s)	2092
HindIII	AAGCTT	3 cut(s)	819, 1137, 2162
HinfI	GANTC	4 cut(s)	71, 1200, 1335, 1915
HpaII	CCGG	7 cut(s)	64, 90, 102, 382, 549, 909, 1772
HphI	GGTGA	7 cut(s)	274, 406, 532, 622, 1282, 1546, 1786
Hpy188I	TCNGA	7 cut(s)	569, 855, 1419, 1675, 1920, 1934, 2031
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	8 cut(s)	341, 695, 1448, 1514, 1737, 1819, 1915, 1949
HpyCH4III	ACNGT	7 cut(s)	16, 459, 705, 811, 1173, 1815, 1973
HpyCH4IV	ACGT	3 cut(s)	143, 1367, 1557
HpyCH4V	TGCA	8 cut(s)	362, 389, 591, 622, 903, 1448, 1561, 1990
HpyF10VI	GCNNNNNNNGC	7 cut(s)	926, 1028, 1115, 1127, 1136, 1188, 1558
HpyF3I	CTNAG	5 cut(s)	400, 1251, 1311, 1786, 2168
HpySE526I	ACGT	3 cut(s)	143, 1367, 1557
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	381
KroNI	GCCGGC	1 cut(s)	383
Ksp22I	TGATCA	4 cut(s)	792, 1284, 1374, 1536
LmnI	GCTCC	5 cut(s)	119, 742, 890, 1773, 1819
Lsp1109I	GCAGC	4 cut(s)	856, 1105, 1890, 1912
LweI	GCATC	3 cut(s)	48, 1419, 1656
MaeI	CTAG	3 cut(s)	257, 641, 1197
MaeII	ACGT	3 cut(s)	143, 1367, 1557
MaeIII	GTNAC	7 cut(s)	636, 841, 938, 1499, 1571, 1753, 2132
MbiI	CCGCTC	2 cut(s)	615, 1768
MfeI	CAATTG	1 cut(s)	1619
MflI	RGATCY	2 cut(s)	1675, 2139
MhlI	GDGCHC	3 cut(s)	221, 481, 1563
MlsI	TGGCCA	1 cut(s)	1093
MluCI	AATT	5 cut(s)	1484, 1545, 1619, 1960, 1991
MluNI	TGGCCA	1 cut(s)	1093
MlyI	GAGTC	2 cut(s)	65, 1209
MmeI	TCCRAC	5 cut(s)	113, 462, 1743, 1797, 2155
Mox20I	TGGCCA	1 cut(s)	1093
Mph1103I	ATGCAT	1 cut(s)	593
MroNI	GCCGGC	1 cut(s)	381
MroXI	GAANNNNTTC	3 cut(s)	97, 821, 1925
MscI	TGGCCA	1 cut(s)	1093
MseI	TTAA	2 cut(s)	237, 1257
MslI	CAYNNNNRTG	2 cut(s)	945, 1934
Msp20I	TGGCCA	1 cut(s)	1093
MspA1I	CMGCKG	2 cut(s)	608, 1903
MspI	CCGG	7 cut(s)	64, 90, 102, 382, 549, 909, 1772
MspR9I	CCNGG	5 cut(s)	65, 910, 1041, 1653, 1772
MunI	CAATTG	1 cut(s)	1619
MvaI	CCWGG	2 cut(s)	1041, 1653
MvnI	CGCG	1 cut(s)	1340
MwoI	GCNNNNNNNGC	7 cut(s)	926, 1028, 1115, 1127, 1136, 1188, 1558
NaeI	GCCGGC	1 cut(s)	383
NciI	CCSGG	3 cut(s)	65, 910, 1772
NcoI	CCATGG	1 cut(s)	558
NdeI	CATATG	1 cut(s)	1397
NgoMIV	GCCGGC	1 cut(s)	381
NlaIV	GGNNCC	3 cut(s)	297, 1821, 1884
NmuCI	GTSAC	5 cut(s)	636, 841, 938, 1753, 2132
NsiI	ATGCAT	1 cut(s)	593
NspI	RCATGY	2 cut(s)	389, 1579
OliI	CACNNNNGTG	1 cut(s)	945
PaeI	GCATGC	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	214
PagI	TCATGA	2 cut(s)	1269, 1353
PciI	ACATGT	1 cut(s)	1575
PcsI	WCGNNNNNNNCGW	2 cut(s)	1107, 1686
PdiI	GCCGGC	1 cut(s)	383
PdmI	GAANNNNTTC	3 cut(s)	97, 821, 1925
PfeI	GAWTC	2 cut(s)	1335, 1915
PkrI	GCNGC	5 cut(s)	871, 1120, 1767, 1902, 1905
PleI	GAGTC	2 cut(s)	65, 1208
PpsI	GAGTC	2 cut(s)	65, 1208
Ppu21I	YACGTR	1 cut(s)	1558
PscI	ACATGT	1 cut(s)	1575
Psp6I	CCWGG	2 cut(s)	1039, 1651
PspEI	GGTNACC	1 cut(s)	1499
PspGI	CCWGG	2 cut(s)	1039, 1651
PspN4I	GGNNCC	3 cut(s)	297, 1821, 1884
PspPI	GGNCC	4 cut(s)	330, 1234, 1474, 1883
PspXI	VCTCGAGB	1 cut(s)	214
PsrI	GAACNNNNNNTAC	2 cut(s)	1823, 1855
PstNI	CAGNNNCTG	1 cut(s)	1906
PsuI	RGATCY	2 cut(s)	1675, 2139
PvuII	CAGCTG	1 cut(s)	1903
RsaI	GTAC	5 cut(s)	212, 836, 1113, 1734, 1832
RsaNI	GTAC	5 cut(s)	211, 835, 1112, 1733, 1831
RseI	CAYNNNNRTG	2 cut(s)	945, 1934
SaqAI	TTAA	2 cut(s)	237, 1257
SatI	GCNGC	5 cut(s)	870, 1119, 1766, 1901, 1904
Sau96I	GGNCC	4 cut(s)	330, 1234, 1474, 1883
SchI	GAGTC	2 cut(s)	65, 1209
ScrFI	CCNGG	5 cut(s)	65, 910, 1041, 1653, 1772
SduI	GDGCHC	3 cut(s)	221, 481, 1563
SfaNI	GCATC	3 cut(s)	48, 1419, 1656
SfcI	CTRYAG	1 cut(s)	669
Sfr274I	CTCGAG	1 cut(s)	214
SinI	GGWCC	2 cut(s)	1474, 1883
SlaI	CTCGAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	2 cut(s)	945, 1934
SmlI	CTYRAG	3 cut(s)	214, 305, 2110
SmoI	CTYRAG	3 cut(s)	214, 305, 2110
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	5 cut(s)	1484, 1545, 1619, 1960, 1991
SsiI	CCGC	7 cut(s)	608, 615, 1293, 1340, 1523, 1645, 1766
SspMI	CTAG	3 cut(s)	257, 641, 1197
StyD4I	CCNGG	5 cut(s)	63, 908, 1039, 1651, 1770
StyI	CCWWGG	3 cut(s)	558, 883, 1176
TaaI	ACNGT	7 cut(s)	16, 459, 705, 811, 1173, 1815, 1973
TaiI	ACGT	3 cut(s)	146, 1370, 1560
TaqI	TCGA	9 cut(s)	84, 215, 450, 461, 952, 1452, 1896, 1964, 2155
TaqII	GACCGA	1 cut(s)	1462
TasI	AATT	5 cut(s)	1484, 1545, 1619, 1960, 1991
TatI	WGTACW	4 cut(s)	210, 834, 1732, 1830
TauI	GCSGC	1 cut(s)	1768
TfiI	GAWTC	2 cut(s)	1335, 1915
Tru1I	TTAA	2 cut(s)	237, 1257
Tru9I	TTAA	2 cut(s)	237, 1257
TscAI	CASTG	4 cut(s)	21, 952, 1315, 1354
TseFI	GTSAC	5 cut(s)	636, 841, 938, 1753, 2132
TseI	GCWGC	4 cut(s)	869, 1118, 1900, 1903
Tsp45I	GTSAC	5 cut(s)	636, 841, 938, 1753, 2132
TspDTI	ATGAA	6 cut(s)	307, 1432, 1628, 1792, 1918, 1952
TspGWI	ACGGA	2 cut(s)	38, 1832
TspRI	CASTG	4 cut(s)	21, 952, 1315, 1354
VneI	GTGCAC	1 cut(s)	1559
VpaK11BI	GGWCC	2 cut(s)	1474, 1883
XapI	RAATTY	2 cut(s)	1484, 1960
XceI	RCATGY	2 cut(s)	389, 1579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1432
XhoI	CTCGAG	1 cut(s)	214
XmiI	GTMKAC	3 cut(s)	69, 511, 1242
XmnI	GAANNNNTTC	3 cut(s)	97, 821, 1925
XspI	CTAG	3 cut(s)	257, 641, 1197
Zsp2I	ATGCAT	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.