Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0011116

Physical Location & Seq

Genomic Coordinates Reverse (-)

6493359 .. 6496717

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1845 bp

ATGGCGTCCCAAATGGCGATCCTTTGCCGGACCCGATCCCTGGCCAAAACCCTAAACGCAAACCCCACCTTCTTCAAAACCATCACCACCTTCTCATTTCTCTCTCAGGAGCCCCAATTCGCCGCCGAGCCAACTCAGCCGGCGGCCCCCGAGGTCCCGCTCCCTCCCAACCCAACCTCATACCCCGAAAACTGGCGCACTCCGCCGTCCTCCGCGGCGTCGGTTCAGTCTCTGCTCCCCCTAGGGTTCCTCCAGCAATCCCCGAGCTTCCAAATCCAGTCCCTCTCGCAAGACCTGGACTCGCAGGGACTGCTCAACGTCTTCGCCGATTGGATGACGTCACAGAAGTGGACGCAGATGAAGCAGTTGTTTGAGCTCTGGATAAGGTCGCTGGACAAGAACGGCAAGCCCAATAAGCCCGATGTGAGCTCTTATAATCACTACCTCAGGGCCACTCTCATGAGCGGAGCCTCGCCGGCGGAGATGCTGGATCTGGTGGCCAGTATGGAGGACCACGGCGTCGAGCCCAACACGGCGTCGTTTAATCTGGTCCTCAAGGCTATGCACGCCGGCAAAGAGTCCGAAGCCGCCGAGAAATTGCTCCAACGGATGTTGCAGACAGGCAATGTATCACCGCCTGACGATGAGTCCTACAACATAGTTGTGAGCTTGCTCTTGCAATCGCACAGAGTTGATGCGGCTTTGAAGTATATAGATTTGACTTTGAAGTCTGGTTATATGGTGTCAATGCAAGTGTTCAAAGATTGTGTACAGGGATGCGTCAATACGGGGAGGCTAGATAGTTTGGTTTCGATAATTGACAAGTGCAAGTCAATGGATCAGAACAAAGCTCTTTGTCCGCCCTGGAACTTGTGCAACTATATTGCGGACGTGGCTTTGCAAGCGGATAATAGCAAGTTGGCAGTTCATGCCCTGAAATTTATGGCCAATTGGATTGCTCGAGGTGAGCAATCAAGGCCGGCAATTTATCTTTCTGTAGATGAAGGATTGCTTCTGTCAGCACTTGCAACTGCTGGCAGGACATATAGTAGTACTTTAGTGGATGCATCATGGGCAATCTTACTACGCTCATTGCGACAAAAGAAGGTCCCTAATCCTGAATCTTACCTTGCAAAGATATCTGCCCTTGCGTCGCTGGGGGAGCTGGAGAGAGCTTTTATTACTCTTCGTGAATTTGAGACTACTTATGCTAATTCCAGTAAAGAAGTAGAAGAGGAACTGTTCTCTCCATTCACCTCTTTATATCCATTGGTTGTGGCATGCTCCAAGACTGGTTTTGAAACTTTGGACTTGGTGTATTTTCAATTAGAGAGTTTGAGCCGTGCAGACCCTCCTTACAAGTCTGTTGCTGCTTTGAATTGTATTGTATTAGGTTGTGCAAATATCTGGGACCTTGACCGTGCTTATCAAACTTTCGAGGCAATTAGTTCCACCTTTGGATTGACCCCTGATATTCATTCATACAATGCTCTTATGCATGCTTTTGGGAAGCTGAAGAAGACTTCGGAAGCTGCAAGAGTATTTGAACACTTGGTGAGTTTGGGTGTCAGACCCAATGCAATGTCATATTCGTTACTTGTAGATGCTCATCTCATCAACAGAGATCCAAAAGCTGCCCTCTCCGTAATCAAGGAAATGGTAAATTCTGGGTTTGAACCTTCAAAAGAAACACTAAAAAAGGTCAAGAGACGATGTATGCGAGAGATGGACTATGAGAGTGATGATCTCGTGGAAGATTTTGCCAAAAGGTTCAACCTTCGAATGGATGGAGAGGCTCGCAGAAACAGATTGTTTGAACTTAATTATAGCACTGGATATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

615

Amino Acids

68.42

Weight (kDa)

6.08

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	490 - 536	5.2e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26460
fragaria_vesca	FvH4_4g30160 FvH4_4g30160
malus_domestica	MD13G1063400.v1.1 MD16G1061800.v1.1
prunus_persica	Prupe.1G286100_v2.0.a1
pyrus_communis	pycom13g05570 pycom16g05390
rosa_chinensis	RchiOBHm_Chr4g0438491
rosa_laevigata	RLG00000006359
rosa_multiflora	Rmu_sc0002327.1_g000019 Rmu_sc0004398.1_g000003
rosa_roxburghii	Rroxscaffold_5G00379500
rosa_rugosa	Rorug04G0310300
rosa_samantha	Rh4AG361100 Rh4BG372400 Rh4CG386400 Rh4DG367200
rosa_wichuraiana	Rw0G006590 Rw0G016540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AasI	GACNNNNNNGTC	2 cut(s)	518, 727
AatII	GACGTC	1 cut(s)	341
AccBSI	CCGCTC	2 cut(s)	160, 465
AccII	CGCG	1 cut(s)	215
AclWI	GGATC	5 cut(s)	13, 30, 498, 846, 1619
AcoI	YGGCCR	3 cut(s)	42, 498, 945
AcsI	RAATTY	3 cut(s)	938, 1193, 1663
AcuI	CTGAAG	1 cut(s)	1535
AcyI	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
AdeI	CACNNNGTG	1 cut(s)	1555
AfaI	GTAC	2 cut(s)	771, 1054
AfiI	CCNNNNNNNGG	3 cut(s)	40, 192, 1783
AhdI	GACNNNNNGTC	1 cut(s)	646
AjiI	CACGTC	1 cut(s)	892
AjnI	CCWGG	3 cut(s)	39, 294, 863
AleI	CACNNNNGTG	1 cut(s)	346
Alw21I	GWGCWC	2 cut(s)	378, 431
Alw26I	GTCTC	3 cut(s)	234, 1193, 1702
AlwI	GGATC	5 cut(s)	13, 30, 498, 846, 1619
AlwNI	CAGNNNCTG	2 cut(s)	232, 310
Ama87I	CYCGRG	3 cut(s)	149, 262, 960
AoxI	GGCC	6 cut(s)	42, 144, 450, 498, 945, 977
ApeKI	GCWGC	3 cut(s)	1370, 1532, 1634
ApoI	RAATTY	3 cut(s)	938, 1193, 1663
AspA2I	CCTAGG	1 cut(s)	241
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	8 cut(s)	30, 145, 154, 450, 511, 550, 1108, 1411
AsuHPI	GGTGA	5 cut(s)	76, 624, 977, 1246, 1567
AsuII	TTCGAA	1 cut(s)	1780
AvaI	CYCGRG	3 cut(s)	149, 262, 960
AvaII	GGWCC	6 cut(s)	30, 154, 511, 550, 1108, 1411
AvrII	CCTAGG	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	446
BalI	TGGCCA	3 cut(s)	44, 500, 947
BanII	GRGCYC	4 cut(s)	114, 378, 431, 528
BauI	CACGAG	1 cut(s)	1748
BbsI	GAAGAC	2 cut(s)	313, 1526
Bbv12I	GWGCWC	2 cut(s)	378, 431
BbvI	GCAGC	3 cut(s)	1357, 1519, 1621
BccI	CCATC	3 cut(s)	89, 1720, 1781
BceAI	ACGGC	5 cut(s)	190, 418, 532, 549, 1326
BciT130I	CCWGG	3 cut(s)	41, 296, 865
BcoDI	GTCTC	3 cut(s)	234, 1193, 1702
BfaI	CTAG	2 cut(s)	242, 797
BfmI	CTRYAG	1 cut(s)	996
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	8 cut(s)	123, 144, 216, 588, 699, 1371, 1533, 1635
BlnI	CCTAGG	1 cut(s)	241
BlsI	GCNGC	8 cut(s)	124, 145, 217, 589, 700, 1372, 1534, 1636
BmcAI	AGTACT	1 cut(s)	1054
Bme1390I	CCNGG	3 cut(s)	41, 296, 865
Bme18I	GGWCC	6 cut(s)	30, 154, 511, 550, 1108, 1411
BmeRI	GACNNNNNGTC	1 cut(s)	646
BmeT110I	CYCGRG	3 cut(s)	149, 262, 960
BmgBI	CACGTC	1 cut(s)	892
BmgT120I	GGNCC	8 cut(s)	30, 145, 154, 450, 511, 550, 1108, 1411
BmiI	GGNNCC	8 cut(s)	32, 111, 147, 156, 248, 469, 1110, 1412
BmrFI	CCNGG	3 cut(s)	41, 296, 865
BmsI	GCATC	6 cut(s)	474, 685, 767, 1054, 1076, 1594
BpiI	GAAGAC	2 cut(s)	313, 1526
BpmI	CTGGAG	2 cut(s)	236, 1187
Bpu14I	TTCGAA	1 cut(s)	1780
BpuEI	CTTGAG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	1608
BsaHI	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
BsaJI	CCNNGG	6 cut(s)	39, 150, 213, 241, 514, 863
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 192, 1783
Bse118I	RCCGGY	4 cut(s)	139, 475, 569, 979
Bse1I	ACTGG	6 cut(s)	197, 277, 501, 1218, 1297, 1837
Bse21I	CCTNAGG	1 cut(s)	446
Bse3DI	GCAATG	3 cut(s)	631, 1091, 1587
Bse8I	GATNNNNATC	1 cut(s)	1608
BseBI	CCWGG	3 cut(s)	41, 296, 865
BseDI	CCNNGG	6 cut(s)	39, 150, 213, 241, 514, 863
BseGI	GGATG	5 cut(s)	339, 615, 782, 1069, 1792
BseJI	GATNNNNATC	1 cut(s)	1608
BseLI	CCNNNNNNNGG	3 cut(s)	40, 192, 1783
BseMI	GCAATG	3 cut(s)	631, 1091, 1587
BseMII	CTCAG	3 cut(s)	119, 149, 460
BseNI	ACTGG	6 cut(s)	197, 277, 501, 1218, 1297, 1837
BseXI	GCAGC	3 cut(s)	1357, 1519, 1621
BseYI	CCCAGC	1 cut(s)	1156
BsgI	GTGCAG	1 cut(s)	1365
Bsh1236I	CGCG	1 cut(s)	215
BshFI	GGCC	6 cut(s)	44, 146, 452, 500, 947, 979
BsiHKAI	GWGCWC	2 cut(s)	378, 431
BsiHKCI	CYCGRG	3 cut(s)	149, 262, 960
BsiSI	CCGG	5 cut(s)	28, 140, 476, 570, 980
BslFI	GGGAC	5 cut(s)	140, 265, 321, 1094, 1424
BslI	CCNNNNNNNGG	3 cut(s)	40, 192, 1783
BsmAI	GTCTC	3 cut(s)	234, 1193, 1702
BsmBI	CGTCTC	1 cut(s)	1702
BsmFI	GGGAC	5 cut(s)	140, 265, 321, 1094, 1424
BsnI	GGCC	6 cut(s)	44, 146, 452, 500, 947, 979
BsoBI	CYCGRG	3 cut(s)	149, 262, 960
Bsp119I	TTCGAA	1 cut(s)	1780
Bsp1286I	GDGCHC	4 cut(s)	114, 378, 431, 528
Bsp1407I	TGTACA	1 cut(s)	769
Bsp143I	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
BspANI	GGCC	6 cut(s)	44, 146, 452, 500, 947, 979
BspCNI	CTCAG	3 cut(s)	118, 148, 459
BspFNI	CGCG	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	459
BspLI	GGNNCC	8 cut(s)	32, 111, 147, 156, 248, 469, 1110, 1412
BspPI	GGATC	5 cut(s)	13, 30, 498, 846, 1619
BspT104I	TTCGAA	1 cut(s)	1780
BsrBI	CCGCTC	2 cut(s)	160, 465
BsrDI	GCAATG	3 cut(s)	631, 1091, 1587
BsrFI	RCCGGY	4 cut(s)	139, 475, 569, 979
BsrGI	TGTACA	1 cut(s)	769
BsrI	ACTGG	6 cut(s)	197, 277, 501, 1218, 1297, 1837
BssAI	RCCGGY	4 cut(s)	139, 475, 569, 979
BssECI	CCNNGG	6 cut(s)	39, 150, 213, 241, 514, 863
BssMI	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
BssNI	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
BssSI	CACGAG	1 cut(s)	1748
BssT1I	CCWWGG	1 cut(s)	241
Bst2BI	CACGAG	1 cut(s)	1748
Bst2UI	CCWGG	3 cut(s)	41, 296, 865
Bst4CI	ACNGT	2 cut(s)	1242, 1421
Bst6I	CTCTTC	2 cut(s)	1191, 1227
BstACI	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
BstAPI	GCANNNNNTGC	2 cut(s)	310, 929
BstAUI	TGTACA	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	1780
BstDEI	CTNAG	3 cut(s)	105, 135, 446
BstDSI	CCRYGG	2 cut(s)	213, 514
BstF5I	GGATG	5 cut(s)	339, 615, 782, 1069, 1792
BstFNI	CGCG	1 cut(s)	215
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	6 cut(s)	21, 38, 493, 841, 1627, 1747
BstMAI	GTCTC	3 cut(s)	234, 1193, 1702
BstMBI	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
BstNI	CCWGG	3 cut(s)	41, 296, 865
BstNSI	RCATGY	2 cut(s)	1284, 1502
BstSCI	CCNGG	3 cut(s)	39, 294, 863
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	3 cut(s)	1357, 1519, 1621
BstV2I	GAAGAC	2 cut(s)	313, 1526
BstX2I	RGATCY	2 cut(s)	490, 1624
BstYI	RGATCY	2 cut(s)	490, 1624
Bsu36I	CCTNAGG	1 cut(s)	446
BsuRI	GGCC	6 cut(s)	44, 146, 452, 500, 947, 979
BtgI	CCRYGG	2 cut(s)	213, 514
BtrI	CACGTC	1 cut(s)	892
BtsCI	GGATG	5 cut(s)	339, 615, 782, 1069, 1792
BtsIMutI	CAGTG	1 cut(s)	1830
CaiI	CAGNNNCTG	2 cut(s)	232, 310
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	4 cut(s)	139, 475, 569, 979
Cfr13I	GGNCC	8 cut(s)	30, 145, 154, 450, 511, 550, 1108, 1411
Cfr42I	CCGCGG	1 cut(s)	216
CseI	GACGC	6 cut(s)	207, 361, 508, 525, 769, 1140
Csp6I	GTAC	2 cut(s)	770, 1053
CviAII	CATG	5 cut(s)	460, 929, 1071, 1281, 1499
CviQI	GTAC	2 cut(s)	770, 1053
DdeI	CTNAG	3 cut(s)	105, 135, 446
DpnI	GATC	6 cut(s)	20, 37, 492, 840, 1626, 1746
DpnII	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
DraIII	CACNNNGTG	1 cut(s)	1555
DrdI	GACNNNNNNGTC	2 cut(s)	518, 727
DriI	GACNNNNNGTC	1 cut(s)	646
DseDI	GACNNNNNNGTC	2 cut(s)	518, 727
EaeI	YGGCCR	3 cut(s)	42, 498, 945
Eam1104I	CTCTTC	2 cut(s)	1191, 1227
Eam1105I	GACNNNNNGTC	1 cut(s)	646
EarI	CTCTTC	2 cut(s)	1191, 1227
EciI	GGCGGA	3 cut(s)	192, 494, 849
Ecl136II	GAGCTC	2 cut(s)	376, 429
Eco130I	CCWWGG	1 cut(s)	241
Eco24I	GRGCYC	4 cut(s)	114, 378, 431, 528
Eco32I	GATATC	1 cut(s)	1140
Eco47I	GGWCC	6 cut(s)	30, 154, 511, 550, 1108, 1411
Eco53kI	GAGCTC	2 cut(s)	376, 429
Eco57I	CTGAAG	1 cut(s)	1535
Eco81I	CCTNAGG	1 cut(s)	446
Eco88I	CYCGRG	3 cut(s)	149, 262, 960
EcoICRI	GAGCTC	2 cut(s)	376, 429
EcoO109I	RGGNCCY	3 cut(s)	154, 1108, 1411
EcoRII	CCWGG	3 cut(s)	39, 294, 863
EcoRV	GATATC	1 cut(s)	1140
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	3 cut(s)	1069, 1500, 1843
EcoT38I	GRGCYC	4 cut(s)	114, 378, 431, 528
ErhI	CCWWGG	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	1702
FaeI	CATG	5 cut(s)	463, 932, 1074, 1284, 1502
FalI	AAGNNNNNCTT	2 cut(s)	996, 1028
FaqI	GGGAC	5 cut(s)	140, 265, 321, 1094, 1424
FatI	CATG	5 cut(s)	459, 928, 1070, 1280, 1498
FauI	CCCGC	1 cut(s)	165
Fnu4HI	GCNGC	8 cut(s)	123, 144, 216, 588, 699, 1371, 1533, 1635
FokI	GGATG	5 cut(s)	346, 622, 789, 1076, 1799
FriOI	GRGCYC	4 cut(s)	114, 378, 431, 528
Fsp4HI	GCNGC	8 cut(s)	123, 144, 216, 588, 699, 1371, 1533, 1635
FspBI	CTAG	2 cut(s)	242, 797
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	8 cut(s)	123, 144, 216, 588, 699, 1371, 1533, 1635
GsaI	CCCAGC	1 cut(s)	1160
GsuI	CTGGAG	2 cut(s)	236, 1187
HaeIII	GGCC	6 cut(s)	44, 146, 452, 500, 947, 979
HapII	CCGG	5 cut(s)	28, 140, 476, 570, 980
HgaI	GACGC	6 cut(s)	207, 361, 508, 525, 769, 1140
HhaI	GCGC	1 cut(s)	198
Hin1I	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
Hin1II	CATG	5 cut(s)	463, 932, 1074, 1284, 1502
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	299, 578, 647, 1121
HpaII	CCGG	5 cut(s)	28, 140, 476, 570, 980
HphI	GGTGA	5 cut(s)	76, 624, 977, 1246, 1567
Hpy166II	GTNNAC	2 cut(s)	351, 770
Hpy188I	TCNGA	4 cut(s)	583, 843, 1528, 1571
Hpy188III	TCNNGA	6 cut(s)	107, 379, 460, 1118, 1190, 1705
Hpy8I	GTNNAC	2 cut(s)	351, 770
Hpy99I	CGWCG	4 cut(s)	223, 524, 541, 1156
HpyAV	CCTTC	6 cut(s)	79, 100, 998, 1099, 1689, 1787
HpyCH4III	ACNGT	2 cut(s)	1242, 1421
HpyCH4IV	ACGT	3 cut(s)	318, 338, 891
HpyF3I	CTNAG	3 cut(s)	105, 135, 446
HpySE526I	ACGT	3 cut(s)	318, 338, 891
Hsp92I	GRCGYC	5 cut(s)	5, 218, 338, 519, 536
Hsp92II	CATG	5 cut(s)	463, 932, 1074, 1284, 1502
HspAI	GCGC	1 cut(s)	196
KroI	GCCGGC	4 cut(s)	139, 475, 569, 979
KroNI	GCCGGC	4 cut(s)	141, 477, 571, 981
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
LmnI	GCTCC	7 cut(s)	109, 165, 240, 467, 606, 1162, 1289
Lsp1109I	GCAGC	3 cut(s)	1357, 1519, 1621
LweI	GCATC	6 cut(s)	474, 685, 767, 1054, 1076, 1594
MaeI	CTAG	2 cut(s)	242, 797
MaeII	ACGT	3 cut(s)	318, 338, 891
MaeIII	GTNAC	2 cut(s)	339, 1593
MalI	GATC	6 cut(s)	20, 37, 492, 840, 1626, 1746
MbiI	CCGCTC	2 cut(s)	160, 465
MboI	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
MboII	GAAGA	7 cut(s)	64, 313, 1178, 1244, 1528, 1531, 1766
MfeI	CAATTG	1 cut(s)	949
MflI	RGATCY	2 cut(s)	490, 1624
MhlI	GDGCHC	4 cut(s)	114, 378, 431, 528
MlsI	TGGCCA	3 cut(s)	44, 500, 947
MluNI	TGGCCA	3 cut(s)	44, 500, 947
MlyI	GAGTC	3 cut(s)	293, 587, 656
MmeI	TCCRAC	1 cut(s)	628
Mox20I	TGGCCA	3 cut(s)	44, 500, 947
Mph1103I	ATGCAT	3 cut(s)	1069, 1500, 1843
MreI	CGCCGGCG	1 cut(s)	475
MroNI	GCCGGC	4 cut(s)	139, 475, 569, 979
MscI	TGGCCA	3 cut(s)	44, 500, 947
MseI	TTAA	2 cut(s)	543, 1821
MslI	CAYNNNNRTG	3 cut(s)	346, 458, 662
Msp20I	TGGCCA	3 cut(s)	44, 500, 947
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	5 cut(s)	28, 140, 476, 570, 980
MspR9I	CCNGG	3 cut(s)	41, 296, 865
MunI	CAATTG	1 cut(s)	949
MvaI	CCWGG	3 cut(s)	41, 296, 865
MvnI	CGCG	1 cut(s)	215
NaeI	GCCGGC	4 cut(s)	141, 477, 571, 981
NdeII	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
NgoMIV	GCCGGC	4 cut(s)	139, 475, 569, 979
NlaIII	CATG	5 cut(s)	463, 932, 1074, 1284, 1502
NlaIV	GGNNCC	8 cut(s)	32, 111, 147, 156, 248, 469, 1110, 1412
NmeAIII	GCCGAG	2 cut(s)	151, 616
NmuCI	GTSAC	1 cut(s)	339
NsiI	ATGCAT	3 cut(s)	1069, 1500, 1843
NspI	RCATGY	2 cut(s)	1284, 1502
NspV	TTCGAA	1 cut(s)	1780
OliI	CACNNNNGTG	1 cut(s)	346
PaeI	GCATGC	2 cut(s)	1284, 1502
PaeR7I	CTCGAG	1 cut(s)	960
PagI	TCATGA	1 cut(s)	459
PcsI	WCGNNNNNNNCGW	3 cut(s)	324, 1093, 1717
PdiI	GCCGGC	4 cut(s)	141, 477, 571, 981
PfeI	GAWTC	1 cut(s)	1121
PkrI	GCNGC	8 cut(s)	124, 145, 217, 589, 700, 1372, 1534, 1636
PleI	GAGTC	3 cut(s)	293, 586, 655
PpsI	GAGTC	3 cut(s)	293, 586, 655
PpuMI	RGGWCCY	3 cut(s)	154, 1108, 1411
PsiI	TTATAA	1 cut(s)	435
Psp124BI	GAGCTC	2 cut(s)	378, 431
Psp5II	RGGWCCY	3 cut(s)	154, 1108, 1411
Psp6I	CCWGG	3 cut(s)	39, 294, 863
PspFI	CCCAGC	1 cut(s)	1156
PspGI	CCWGG	3 cut(s)	39, 294, 863
PspN4I	GGNNCC	8 cut(s)	32, 111, 147, 156, 248, 469, 1110, 1412
PspPI	GGNCC	8 cut(s)	30, 145, 154, 450, 511, 550, 1108, 1411
PspPPI	RGGWCCY	3 cut(s)	154, 1108, 1411
PspXI	VCTCGAGB	1 cut(s)	960
PstNI	CAGNNNCTG	2 cut(s)	232, 310
PsuI	RGATCY	2 cut(s)	490, 1624
RsaI	GTAC	2 cut(s)	771, 1054
RsaNI	GTAC	2 cut(s)	770, 1053
RseI	CAYNNNNRTG	3 cut(s)	346, 458, 662
SacI	GAGCTC	2 cut(s)	378, 431
SacII	CCGCGG	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	543, 1821
SatI	GCNGC	8 cut(s)	123, 144, 216, 588, 699, 1371, 1533, 1635
Sau3AI	GATC	6 cut(s)	18, 35, 490, 838, 1624, 1744
Sau96I	GGNCC	8 cut(s)	30, 145, 154, 450, 511, 550, 1108, 1411
ScaI	AGTACT	1 cut(s)	1054
SchI	GAGTC	3 cut(s)	293, 587, 656
ScrFI	CCNGG	3 cut(s)	41, 296, 865
SduI	GDGCHC	4 cut(s)	114, 378, 431, 528
SfaNI	GCATC	6 cut(s)	474, 685, 767, 1054, 1076, 1594
SfcI	CTRYAG	1 cut(s)	996
Sfr274I	CTCGAG	1 cut(s)	960
Sfr303I	CCGCGG	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	1780
SgrAI	CRCCGGYG	1 cut(s)	475
SgrBI	CCGCGG	1 cut(s)	216
SinI	GGWCC	6 cut(s)	30, 154, 511, 550, 1108, 1411
SlaI	CTCGAG	1 cut(s)	960
SmiMI	CAYNNNNRTG	3 cut(s)	346, 458, 662
SmlI	CTYRAG	2 cut(s)	554, 960
SmoI	CTYRAG	2 cut(s)	554, 960
SphI	GCATGC	2 cut(s)	1284, 1502
SspMI	CTAG	2 cut(s)	242, 797
SstI	GAGCTC	2 cut(s)	378, 431
StyD4I	CCNGG	3 cut(s)	39, 294, 863
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	1242, 1421
TaiI	ACGT	3 cut(s)	321, 341, 894
TaqI	TCGA	5 cut(s)	522, 812, 961, 1437, 1780
TatI	WGTACW	2 cut(s)	769, 1052
TauI	GCSGC	5 cut(s)	125, 146, 218, 590, 701
TfiI	GAWTC	1 cut(s)	1121
Tru1I	TTAA	2 cut(s)	543, 1821
Tru9I	TTAA	2 cut(s)	543, 1821
TscAI	CASTG	1 cut(s)	1837
TseFI	GTSAC	1 cut(s)	339
TseI	GCWGC	3 cut(s)	1370, 1532, 1634
Tsp45I	GTSAC	1 cut(s)	339
TspDTI	ATGAA	5 cut(s)	374, 917, 1017, 1466, 1470
TspGWI	ACGGA	2 cut(s)	622, 1633
TspRI	CASTG	1 cut(s)	1837
VpaK11BI	GGWCC	6 cut(s)	30, 154, 511, 550, 1108, 1411
XapI	RAATTY	3 cut(s)	938, 1193, 1663
XceI	RCATGY	2 cut(s)	1284, 1502
XhoI	CTCGAG	1 cut(s)	960
XmaJI	CCTAGG	1 cut(s)	241
XspI	CTAG	2 cut(s)	242, 797
ZraI	GACGTC	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	1054
Zsp2I	ATGCAT	3 cut(s)	1069, 1500, 1843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.