Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0007903

Physical Location & Seq

Genomic Coordinates Reverse (-)

4581996 .. 4588068

Gene Structure 6073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1066200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3093 bp

ATGCCCGGGTTTTACTCAGTGAGGGATCTTAACGAGGATCCAAACAATTGTAGCTGGCCCTTATATTATGGAGATAAAACCTTGTCAAACAGGCAGTATTGCAATGGTTTCTTGCCGAGGGCCACGAGTGATGCTTTTCCAGGGTATGATAAGGATGTAGTCAAGCAGACCATGCTTGAGCACGAGGCCACATTTAAGAAGCAGGTGAGTGAACTTCACCGGCTGTACAGAATTCAAAGGGACTTGATGGATGAAATAAAAAGGAAAGAACTTCATAGAAACCAGATACCCATGGAAACATCATTGTCGTCAAGTCCCTTAGCATCTCAAATTACATCTGAAGATGCTCGGAAATGGCATGATTCCAGCTTTCCTTTGGTAAACTCTGTTAATGCTGGACCATTGGTTCCAGGTGTTGAAGGTACCCATTCTCCATCTAGTGCTGTCAAAGGAAACAACCAAAAAATTGGTTTGTTTCCATACCAAAATGGGATTAGTTCGAAAGATGTTGAGGTGATGGAGTTGAGACCCACAAAAGTGAGGAAAAAAATGTTTGATCTTCAACTTCCAGCTGATGTGTACGATGATTCTGACGAAGGGGAGCAGTTCACTGATGAGAAAGTTTCTGGCACACCTAGTTGTCAGCCGAATAAAAATTGTAAAACTGAACTCGAGGGTAGTGCAAAGCTCTTTTTTGGTGAAGGTGCGAAGACAGATTGCAAAGGACGTGTTTCAAGATCTGATACATGTTTGAGGAGCACAAATGGTTTGGCTGACTTGAATGAGCCTATTCAAGTTGAAGAAACAAATGCTTCAGAATACGCTTATCCTCTGGGCCATGACTCTTATCAAGGAAAGATTCAGGGCCCCTATCAGGCTGCTAAGTCGAGGTCGCAGCTTTCAGGTTTGCCAAAGGAAATATCACTCAACTCTCATCATGTAAGTGATAAGGTGATCCTGAACAACATACATTTGGGGAACGGAAGTGTAAAAGGGTGGTTTTCCCATGTTCTTGAAGCAGGGCAAAGTAAAAGCAACCTTAAAACTGTTTCCCAATGTCTCCAAACAGAAAGGTTGCCGATATCGTCCCAGCCAATGCAAGGTTCTATTAACAATGTTCATGAAACTGCTTTCTATCTGACTGATAAAAGCAAGGTGGACTTGTGGAGAGAGAGGACAGTTTGTGGTGTGGAGGATTCGGAAAGAAATCATGAAATTTCCAATAATAAGCATCCGAACAATTTTGTGGCTTCTCATATGCCAAGTCCATATCATCCCATTCTTCCTTCCTCGGATGTGGCCAGGTCGTGGACTCGCTCGGTTCCATCGTCGGAAAAGCCAGGCAGTGGCGTAAGCCAAAAGCCGTTATCAGTTCAAACTCACCCGTGTTTTCCCTCATCTGCTATCTTGAGCAAGAGTTCCCAGTCATCAGTTCAGAGCAATGGGATTTTTGGAGATAGGTGGTATCTCAACAGCAATTCTAGTTCTAACCATGGTTCTGGAAGTGAAGTACCATACCAAAATGGGTTTCACCGTGGTTCATCTTCGGGATCTAAGGAACTAGTTCGCTTCCCGTCTCTCAGCTACGACTATCAGAGCAGCAGTAACGATCACAATGGAGGATCTGAGCACTTGAGGAGTCAGGGTTCAGCAGTGCACTACAAGGGTTCAACTTGCAAGGATGTGAAGTTTGCAAAGGAAGTAAACTTAAATGTAGTGCTTTCAAATAGCTCATCCGATGAGGAAATACCCCAAGCCAAGCCTTCTTCTAAGAATGAGTTTGCCAATGCAGGCAGAGTTTCAAAGACTGGTGTGCACGATTTAAATCAAACTTTTGCTCAGGACATAGAATCAGTTCCTTGTGAGAATGACATTGAGGCCAGAAGGACCGAACTTGGTGACAGCCCGTGCAAGAGAAAACTTCTTGGATTTCCTATTTTTGAAAAGCCTCATAATGCTAAGAACGAGTCCTATTCTCTTACCTCCCCGTCTGTGGAAAATAATAAGAGATACAGAGGACTGGATATCAACTTGCCCTGCGATCCTTCAGCTCCTGACTTGGCCACACAGAATGTATCAGAAATTGTAGTTGTGGAAGAGAGAATAGATATGAAGGTTGCAAGTGTCAGACATGTCATCGATTTGAACTCGTGTGTCAGTGATGATGAAGAATCTTTGAAATCTTCTGCTCCAAGCACCAGTGTGAAGATCACAGTTGGATTAGATTTGGAAGCCCCCATTGTTCCGGAGGCTGATGATAGTGTCAGCCTTGTGGAAGCATCTGCTGAAAAGCAGAAAGCAATGCCTTTAGCACCACTACAACACCCAGCTGAACCTCCTCAAGAGGAACTTGTGAGAGTAGCAGCGGAGGCAATAGTTGCCATCTCATCAACTGGTCCCCACAATCATACTGATGAATCCTCTTGCAGTCCACCCGAAGCTTCTTCAACTGACCCCCTTCTGTGGTTTGTGGAGATAGCTTCTACTTGTGGGAATGATCTTGAGAGCAAGTTTGACATTGTTGCGAGAGGCAAAGATGGCGATGATAATGATGAATCTTTATCAGACGCGTTTGATTACTTTGAATTTGTGACTTTGAAACTGAGAGAGACCAGGGAAGAAGATTACATGCCTAAGCCTCTGGTTCCAGAAAACTTGAAGCTGGAAGAAACAGGAAACACATTACTACCAAATCCACCCAGAAAAGGCCAGTCAAGGAGAGGGAGGCAGCGGAGGGACTTCCAAAGGGATATCCTTCCTGGTCTTGCTTCCTTGTCAAGGCACGAAGTGACTGAAGATCTCCAGACATTTGGAGGGTTAATGCGGGCAACAGGCCATTCATGGCAGTCAGGACTAACCAGGAGAAACTCAACAAGAAACGGTGGTGGTAGGGGCAGGCGACGAGCAGTGGTGAATCCCTCTCCCCCTGTGGAAACTATCCCAGCTTGCGCTCCGCTGGTACAGCAGCTTAATAATACCGAAATGGGACTGGAAGATAGAAGCCTAACCGGTTGGGGTAAAACGACCAGAAGGCCCCGTAGACAGAGATGCGCGGCAGGTAATAATCTCGCATCATCCGTTCCTTTAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF863

Protein Analysis

1031

Amino Acids

113.45

Weight (kDa)

5.99

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF863	PF05904	134 - 587	7.6e-142	Plant protein of unknown function (DUF863)
DUF863	PF05904	603 - 1017	1.1e-172	Plant protein of unknown function (DUF863)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007903)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26620 AT1G69360
fragaria_vesca	FvH4_4g30520 FvH4_4g30520 FvH4_4g30520
malus_domestica	MD13G1066200.v1.1 MD16G1065200.v1.1
prunus_persica	Prupe.1G281700_v2.0.a1
pyrus_communis	pycom13g05860 pycom16g05700
rosa_chinensis	RchiOBHm_Chr4g0438891
rosa_laevigata	RLG00000006321
rosa_multiflora	Rmu_sc0002505.1_g000023
rosa_roxburghii	Rroxscaffold_5G00379920
rosa_rugosa	Rorug04G0314100 Rorug04G0314100 Rorug04G0314100 Rorug04G0314200
rosa_samantha	Rh4AG364900 Rh4BG376000 Rh4CG390100 Rh4DG370700
rosa_wichuraiana	Rw0G007300 Rw0G016850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	193, 3047
Acc65I	GGTACC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	2 cut(s)	1308, 1346
AccI	GTMKAC	1 cut(s)	3040
AccII	CGCG	2 cut(s)	2570, 3053
AccIII	TCCGGA	1 cut(s)	2245
AciI	CCGC	5 cut(s)	2366, 2731, 2824, 2954, 3053
AclWI	GGATC	7 cut(s)	32, 33, 45, 949, 1558, 1630, 2036
AcoI	YGGCCR	2 cut(s)	1299, 2061
AcsI	RAATTY	3 cut(s)	231, 1215, 2585
AcuI	CTGAAG	4 cut(s)	360, 798, 2031, 2814
AdeI	CACNNNGTG	1 cut(s)	2788
AfaI	GTAC	5 cut(s)	227, 424, 581, 1512, 2961
AfiI	CCNNNNNNNGG	8 cut(s)	874, 1100, 1308, 1346, 1993, 2463, 2705, 2778
AflIII	ACRYGT	4 cut(s)	727, 746, 2131, 2568
AgeI	ACCGGT	1 cut(s)	3008
AhlI	ACTAGT	1 cut(s)	1561
AjiI	CACGTC	1 cut(s)	728
AjnI	CCWGG	7 cut(s)	139, 409, 1301, 1339, 2612, 2758, 2858
AjuI	GAANNNNNNNTTGG	4 cut(s)	1087, 1119, 1512, 1544
AleI	CACNNNNGTG	2 cut(s)	536, 2201
AloI	GAACNNNNNNTCC	4 cut(s)	390, 422, 1630, 1662
Alw21I	GWGCWC	5 cut(s)	183, 761, 1632, 1659, 1818
Alw26I	GTCTC	4 cut(s)	520, 1064, 1581, 2603
Alw44I	GTGCAC	2 cut(s)	1655, 1814
AlwI	GGATC	7 cut(s)	32, 33, 45, 949, 1558, 1630, 2036
AlwNI	CAGNNNCTG	1 cut(s)	2054
Ama87I	CYCGRG	2 cut(s)	5, 671
Aor13HI	TCCGGA	1 cut(s)	2245
ApaI	GGGCCC	1 cut(s)	869
ApaLI	GTGCAC	2 cut(s)	1655, 1814
ApeKI	GCWGC	6 cut(s)	878, 895, 1599, 2363, 2728, 2965
ApoI	RAATTY	3 cut(s)	231, 1215, 2585
AsiGI	ACCGGT	1 cut(s)	3008
Asp700I	GAANNNNTTC	2 cut(s)	1563, 1854
Asp718I	GGTACC	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	2951, 3053
AspS9I	GGNCC	9 cut(s)	57, 120, 398, 835, 865, 866, 1887, 2396, 3033
AsuC2I	CCSGG	2 cut(s)	6, 7
AsuHPI	GGTGA	9 cut(s)	209, 217, 526, 710, 964, 1373, 1523, 1910, 2923
AsuII	TTCGAA	1 cut(s)	500
AvaI	CYCGRG	2 cut(s)	5, 671
AvaII	GGWCC	3 cut(s)	398, 1887, 2396
BaeGI	GKGCMC	3 cut(s)	869, 1659, 1818
BalI	TGGCCA	2 cut(s)	1301, 2063
BamHI	GGATCC	1 cut(s)	37
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	869
BauI	CACGAG	3 cut(s)	124, 182, 2149
BbsI	GAAGAC	1 cut(s)	716
Bbv12I	GWGCWC	5 cut(s)	183, 761, 1632, 1659, 1818
BbvI	GCAGC	6 cut(s)	865, 907, 1611, 2375, 2740, 2977
BccI	CCATC	6 cut(s)	241, 442, 511, 1333, 2390, 2531
BceAI	ACGGC	1 cut(s)	1348
BcgI	CGANNNNNNTGC	2 cut(s)	662, 696
BciT130I	CCWGG	7 cut(s)	141, 411, 1303, 1341, 2614, 2760, 2860
BcnI	CCSGG	2 cut(s)	6, 7
BcoDI	GTCTC	4 cut(s)	520, 1064, 1581, 2603
BcuI	ACTAGT	1 cut(s)	1561
BfaI	CTAG	4 cut(s)	438, 636, 1482, 1562
BfuAI	ACCTGC	2 cut(s)	193, 3047
BglII	AGATCT	2 cut(s)	737, 2797
BisI	GCNGC	7 cut(s)	879, 896, 1600, 2364, 2729, 2966, 3054
BlsI	GCNGC	7 cut(s)	880, 897, 1601, 2365, 2730, 2967, 3055
Bme1390I	CCNGG	9 cut(s)	6, 7, 141, 411, 1303, 1341, 2614, 2760, 2860
Bme18I	GGWCC	3 cut(s)	398, 1887, 2396
BmeT110I	CYCGRG	2 cut(s)	5, 671
BmgBI	CACGTC	1 cut(s)	728
BmgT120I	GGNCC	9 cut(s)	57, 120, 398, 835, 865, 866, 1887, 2396, 3033
BmiI	GGNNCC	9 cut(s)	39, 408, 424, 867, 868, 1323, 2398, 2646, 3035
BmrFI	CCNGG	9 cut(s)	6, 7, 141, 411, 1303, 1341, 2614, 2760, 2860
BmrI	ACTGGG	1 cut(s)	1417
BmsI	GCATC	7 cut(s)	121, 332, 334, 1240, 2288, 3038, 3080
BmuI	ACTGGG	1 cut(s)	1417
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	2786
Bpu10I	CCTNAGC	3 cut(s)	319, 1839, 2634
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	5 cut(s)	197, 1429, 1654, 2325, 2522
BpuMI	CCSGG	2 cut(s)	6, 7
Bsa29I	ATCGAT	1 cut(s)	2139
BsaBI	GATNNNNATC	1 cut(s)	1824
BsaI	GGTCTC	2 cut(s)	520, 2603
BsaJI	CCNNGG	8 cut(s)	5, 116, 140, 291, 1290, 1492, 1534, 2613
BsaWI	WCCGGW	2 cut(s)	2245, 3008
BsaXI	ACNNNNNCTCC	4 cut(s)	415, 445, 1630, 1660
Bsc4I	CCNNNNNNNGG	8 cut(s)	874, 1100, 1308, 1346, 1993, 2463, 2705, 2778
Bse118I	RCCGGY	2 cut(s)	219, 3008
Bse1I	ACTGG	7 cut(s)	1423, 1813, 2025, 2199, 2398, 2710, 2994
Bse3DI	GCAATG	3 cut(s)	109, 1447, 2307
Bse8I	GATNNNNATC	1 cut(s)	1824
BseAI	TCCGGA	1 cut(s)	2245
BseBI	CCWGG	7 cut(s)	141, 411, 1303, 1341, 2614, 2760, 2860
BseCI	ATCGAT	1 cut(s)	2139
BseDI	CCNNGG	8 cut(s)	5, 116, 140, 291, 1290, 1492, 1534, 2613
BseGI	GGATG	8 cut(s)	160, 256, 1231, 1273, 1300, 1687, 1733, 3074
BseJI	GATNNNNATC	1 cut(s)	1824
BseLI	CCNNNNNNNGG	8 cut(s)	874, 1100, 1308, 1346, 1993, 2463, 2705, 2778
BseMI	GCAATG	3 cut(s)	109, 1447, 2307
BseMII	CTCAG	5 cut(s)	30, 1594, 1617, 1853, 2594
BseNI	ACTGG	7 cut(s)	1423, 1813, 2025, 2199, 2398, 2710, 2994
BseRI	GAGGAG	3 cut(s)	769, 1651, 2328
BseSI	GKGCMC	3 cut(s)	869, 1659, 1818
BseXI	GCAGC	6 cut(s)	865, 907, 1611, 2375, 2740, 2977
BseYI	CCCAGC	3 cut(s)	1089, 2326, 2941
Bsh1236I	CGCG	2 cut(s)	2570, 3053
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	3008
BshVI	ATCGAT	1 cut(s)	2139
BsiHKAI	GWGCWC	5 cut(s)	183, 761, 1632, 1659, 1818
BsiHKCI	CYCGRG	2 cut(s)	5, 671
BsiSI	CCGG	4 cut(s)	6, 220, 2246, 3009
BslFI	GGGAC	6 cut(s)	254, 300, 1072, 2382, 2750, 3000
BslI	CCNNNNNNNGG	8 cut(s)	874, 1100, 1308, 1346, 1993, 2463, 2705, 2778
BsmAI	GTCTC	4 cut(s)	520, 1064, 1581, 2603
BsmBI	CGTCTC	1 cut(s)	1581
BsmFI	GGGAC	6 cut(s)	254, 300, 1072, 2382, 2750, 3000
Bso31I	GGTCTC	2 cut(s)	520, 2603
BsoBI	CYCGRG	2 cut(s)	5, 671
Bsp119I	TTCGAA	1 cut(s)	500
Bsp120I	GGGCCC	1 cut(s)	865
Bsp1286I	GDGCHC	6 cut(s)	183, 761, 869, 1632, 1659, 1818
Bsp13I	TCCGGA	1 cut(s)	2245
Bsp1407I	TGTACA	1 cut(s)	225
Bsp19I	CCATGG	2 cut(s)	291, 1492
BspACI	CCGC	5 cut(s)	2366, 2731, 2824, 2954, 3053
BspCNI	CTCAG	5 cut(s)	29, 1593, 1618, 1852, 2595
BspDI	ATCGAT	1 cut(s)	2139
BspEI	TCCGGA	1 cut(s)	2245
BspFNI	CGCG	2 cut(s)	2570, 3053
BspHI	TCATGA	2 cut(s)	1120, 1210
BspLI	GGNNCC	9 cut(s)	39, 408, 424, 867, 868, 1323, 2398, 2646, 3035
BspMI	ACCTGC	2 cut(s)	193, 3047
BspPI	GGATC	7 cut(s)	32, 33, 45, 949, 1558, 1630, 2036
BspT104I	TTCGAA	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	2 cut(s)	520, 2603
BsrDI	GCAATG	3 cut(s)	109, 1447, 2307
BsrFI	RCCGGY	2 cut(s)	219, 3008
BsrGI	TGTACA	1 cut(s)	225
BsrI	ACTGG	7 cut(s)	1423, 1813, 2025, 2199, 2398, 2710, 2994
BssAI	RCCGGY	2 cut(s)	219, 3008
BssECI	CCNNGG	8 cut(s)	5, 116, 140, 291, 1290, 1492, 1534, 2613
BssSI	CACGAG	3 cut(s)	124, 182, 2149
BssT1I	CCWWGG	2 cut(s)	291, 1492
Bst2BI	CACGAG	3 cut(s)	124, 182, 2149
Bst2UI	CCWGG	7 cut(s)	141, 411, 1303, 1341, 2614, 2760, 2860
Bst4CI	ACNGT	5 cut(s)	1048, 1180, 1535, 2215, 2882
Bst6I	CTCTTC	1 cut(s)	2091
BstAPI	GCANNNNNTGC	2 cut(s)	172, 2378
BstAUI	TGTACA	1 cut(s)	225
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	5 cut(s)	56, 1792, 2826, 2897, 2947
BstDSI	CCRYGG	3 cut(s)	291, 1492, 1534
BstENI	CCTNNNNNAGG	1 cut(s)	2776
BstF5I	GGATG	8 cut(s)	160, 256, 1231, 1273, 1300, 1687, 1733, 3074
BstFNI	CGCG	2 cut(s)	2570, 3053
BstHHI	GCGC	2 cut(s)	2951, 3053
BstMAI	GTCTC	4 cut(s)	520, 1064, 1581, 2603
BstMWI	GCNNNNNNNGC	5 cut(s)	172, 2369, 2378, 2538, 2962
BstNI	CCWGG	7 cut(s)	141, 411, 1303, 1341, 2614, 2760, 2860
BstNSI	RCATGY	3 cut(s)	750, 2135, 2632
BstSCI	CCNGG	9 cut(s)	4, 5, 139, 409, 1301, 1339, 2612, 2758, 2858
BstSLI	GKGCMC	3 cut(s)	869, 1659, 1818
BstUI	CGCG	2 cut(s)	2570, 3053
BstV1I	GCAGC	6 cut(s)	865, 907, 1611, 2375, 2740, 2977
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	6 cut(s)	25, 37, 737, 1550, 1622, 2797
BstXI	CCANNNNNNTGG	3 cut(s)	467, 1499, 2810
BstYI	RGATCY	6 cut(s)	25, 37, 737, 1550, 1622, 2797
Bsu15I	ATCGAT	1 cut(s)	2139
BsuTUI	ATCGAT	1 cut(s)	2139
BtgI	CCRYGG	3 cut(s)	291, 1492, 1534
BtgZI	GCGATG	1 cut(s)	2556
BtrI	CACGTC	1 cut(s)	728
BtsCI	GGATG	8 cut(s)	160, 256, 1231, 1273, 1300, 1687, 1733, 3074
BtsI	GCAGTG	3 cut(s)	1351, 1659, 2913
BtsIMutI	CAGTG	7 cut(s)	24, 609, 1351, 1659, 2164, 2206, 2913
BveI	ACCTGC	2 cut(s)	193, 3047
Cac8I	GCNNGC	5 cut(s)	56, 1792, 2826, 2897, 2947
CaiI	CAGNNNCTG	1 cut(s)	2054
CciI	TCATGA	2 cut(s)	1120, 1210
CfoI	GCGC	2 cut(s)	2951, 3053
Cfr10I	RCCGGY	2 cut(s)	219, 3008
Cfr13I	GGNCC	9 cut(s)	57, 120, 398, 835, 865, 866, 1887, 2396, 3033
Cfr9I	CCCGGG	1 cut(s)	5
ClaI	ATCGAT	1 cut(s)	2139
CseI	GACGC	1 cut(s)	2576
Csp6I	GTAC	5 cut(s)	226, 423, 580, 1511, 2960
CspAI	ACCGGT	1 cut(s)	3008
CviQI	GTAC	5 cut(s)	226, 423, 580, 1511, 2960
DraI	TTTAAA	1 cut(s)	1824
DraIII	CACNNNGTG	1 cut(s)	2788
EaeI	YGGCCR	2 cut(s)	1299, 2061
Eam1104I	CTCTTC	1 cut(s)	2091
EarI	CTCTTC	1 cut(s)	2091
Eco130I	CCWWGG	2 cut(s)	291, 1492
Eco24I	GRGCYC	1 cut(s)	869
Eco31I	GGTCTC	2 cut(s)	520, 2603
Eco32I	GATATC	3 cut(s)	1083, 2026, 2752
Eco47I	GGWCC	3 cut(s)	398, 1887, 2396
Eco57I	CTGAAG	4 cut(s)	360, 798, 2031, 2814
Eco88I	CYCGRG	2 cut(s)	5, 671
EcoNI	CCTNNNNNAGG	1 cut(s)	2776
EcoO109I	RGGNCCY	3 cut(s)	865, 866, 3033
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	7 cut(s)	139, 409, 1301, 1339, 2612, 2758, 2858
EcoRV	GATATC	3 cut(s)	1083, 2026, 2752
EcoT14I	CCWWGG	2 cut(s)	291, 1492
EcoT38I	GRGCYC	1 cut(s)	869
ErhI	CCWWGG	2 cut(s)	291, 1492
Esp3I	CGTCTC	1 cut(s)	1581
FalI	AAGNNNNNCTT	4 cut(s)	1145, 1177, 2334, 2366
FaqI	GGGAC	6 cut(s)	254, 300, 1072, 2382, 2750, 3000
FauI	CCCGC	1 cut(s)	2817
FauNDI	CATATG	1 cut(s)	1257
FblI	GTMKAC	1 cut(s)	3040
Fnu4HI	GCNGC	7 cut(s)	879, 896, 1600, 2364, 2729, 2966, 3054
FokI	GGATG	8 cut(s)	167, 263, 1218, 1260, 1307, 1694, 1720, 3061
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	7 cut(s)	879, 896, 1600, 2364, 2729, 2966, 3054
FspBI	CTAG	4 cut(s)	438, 636, 1482, 1562
GlaI	GCGC	2 cut(s)	2950, 3052
GluI	GCNGC	7 cut(s)	879, 896, 1600, 2364, 2729, 2966, 3054
GsaI	CCCAGC	3 cut(s)	1093, 2330, 2945
GsuI	CTGGAG	1 cut(s)	2786
HapII	CCGG	4 cut(s)	6, 220, 2246, 3009
HgaI	GACGC	1 cut(s)	2576
HhaI	GCGC	2 cut(s)	2951, 3053
Hin6I	GCGC	2 cut(s)	2949, 3051
HinP1I	GCGC	2 cut(s)	2949, 3051
HindIII	AAGCTT	1 cut(s)	2439
HpaII	CCGG	4 cut(s)	6, 220, 2246, 3009
HphI	GGTGA	9 cut(s)	209, 217, 526, 710, 964, 1373, 1523, 1910, 2923
Hpy99I	CGWCG	2 cut(s)	1333, 2904
HpyCH4III	ACNGT	5 cut(s)	1048, 1180, 1535, 2215, 2882
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	5 cut(s)	172, 2369, 2378, 2538, 2962
HpySE526I	ACGT	1 cut(s)	727
HspAI	GCGC	2 cut(s)	2949, 3051
Kpn2I	TCCGGA	1 cut(s)	2245
KpnI	GGTACC	1 cut(s)	426
LmnI	GCTCC	5 cut(s)	601, 756, 2056, 2194, 2956
Lsp1109I	GCAGC	6 cut(s)	865, 907, 1611, 2375, 2740, 2977
LweI	GCATC	7 cut(s)	121, 332, 334, 1240, 2288, 3038, 3080
MaeI	CTAG	4 cut(s)	438, 636, 1482, 1562
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	4 cut(s)	1604, 1898, 2590, 2788
MfeI	CAATTG	1 cut(s)	46
MflI	RGATCY	6 cut(s)	25, 37, 737, 1550, 1622, 2797
MhlI	GDGCHC	6 cut(s)	183, 761, 869, 1632, 1659, 1818
MlsI	TGGCCA	2 cut(s)	1301, 2063
MluI	ACGCGT	1 cut(s)	2568
MluNI	TGGCCA	2 cut(s)	1301, 2063
MlyI	GAGTC	4 cut(s)	836, 1306, 1648, 1976
MmeI	TCCRAC	2 cut(s)	1311, 2197
Mox20I	TGGCCA	2 cut(s)	1301, 2063
MroI	TCCGGA	1 cut(s)	2245
MroXI	GAANNNNTTC	2 cut(s)	1563, 1854
MscI	TGGCCA	2 cut(s)	1301, 2063
MslI	CAYNNNNRTG	4 cut(s)	536, 942, 2201, 2412
Msp20I	TGGCCA	2 cut(s)	1301, 2063
MspA1I	CMGCKG	5 cut(s)	572, 2330, 2366, 2731, 2956
MspI	CCGG	4 cut(s)	6, 220, 2246, 3009
MspR9I	CCNGG	9 cut(s)	6, 7, 141, 411, 1303, 1341, 2614, 2760, 2860
MunI	CAATTG	1 cut(s)	46
MvaI	CCWGG	7 cut(s)	141, 411, 1303, 1341, 2614, 2760, 2860
MvnI	CGCG	2 cut(s)	2570, 3053
MwoI	GCNNNNNNNGC	5 cut(s)	172, 2369, 2378, 2538, 2962
NciI	CCSGG	2 cut(s)	6, 7
NcoI	CCATGG	2 cut(s)	291, 1492
NdeI	CATATG	1 cut(s)	1257
NlaIV	GGNNCC	9 cut(s)	39, 408, 424, 867, 868, 1323, 2398, 2646, 3035
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	3 cut(s)	1898, 2590, 2788
NspI	RCATGY	3 cut(s)	750, 2135, 2632
NspV	TTCGAA	1 cut(s)	500
OliI	CACNNNNGTG	2 cut(s)	536, 2201
PaeR7I	CTCGAG	1 cut(s)	671
PagI	TCATGA	2 cut(s)	1120, 1210
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	2 cut(s)	746, 2131
PcsI	WCGNNNNNNNCGW	2 cut(s)	1325, 3075
PdmI	GAANNNNTTC	2 cut(s)	1563, 1854
PfeI	GAWTC	9 cut(s)	362, 587, 859, 1196, 1850, 2171, 2417, 2555, 2914
PflMI	CCANNNNNTGG	2 cut(s)	1308, 1346
PinAI	ACCGGT	1 cut(s)	3008
PkrI	GCNGC	7 cut(s)	880, 897, 1601, 2365, 2730, 2967, 3055
PleI	GAGTC	4 cut(s)	836, 1306, 1647, 1975
PpsI	GAGTC	4 cut(s)	836, 1306, 1647, 1975
PscI	ACATGT	2 cut(s)	746, 2131
Psp6I	CCWGG	7 cut(s)	139, 409, 1301, 1339, 2612, 2758, 2858
PspFI	CCCAGC	3 cut(s)	1089, 2326, 2941
PspGI	CCWGG	7 cut(s)	139, 409, 1301, 1339, 2612, 2758, 2858
PspN4I	GGNNCC	9 cut(s)	39, 408, 424, 867, 868, 1323, 2398, 2646, 3035
PspOMI	GGGCCC	1 cut(s)	865
PspPI	GGNCC	9 cut(s)	57, 120, 398, 835, 865, 866, 1887, 2396, 3033
PspXI	VCTCGAGB	1 cut(s)	671
PstNI	CAGNNNCTG	1 cut(s)	2054
PsuI	RGATCY	6 cut(s)	25, 37, 737, 1550, 1622, 2797
PvuII	CAGCTG	2 cut(s)	572, 2330
RsaI	GTAC	5 cut(s)	227, 424, 581, 1512, 2961
RsaNI	GTAC	5 cut(s)	226, 423, 580, 1511, 2960
RseI	CAYNNNNRTG	4 cut(s)	536, 942, 2201, 2412
SatI	GCNGC	7 cut(s)	879, 896, 1600, 2364, 2729, 2966, 3054
Sau96I	GGNCC	9 cut(s)	57, 120, 398, 835, 865, 866, 1887, 2396, 3033
SchI	GAGTC	4 cut(s)	836, 1306, 1648, 1976
ScrFI	CCNGG	9 cut(s)	6, 7, 141, 411, 1303, 1341, 2614, 2760, 2860
SduI	GDGCHC	6 cut(s)	183, 761, 869, 1632, 1659, 1818
SfaNI	GCATC	7 cut(s)	121, 332, 334, 1240, 2288, 3038, 3080
Sfr274I	CTCGAG	1 cut(s)	671
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	3 cut(s)	398, 1887, 2396
SlaI	CTCGAG	1 cut(s)	671
SmaI	CCCGGG	1 cut(s)	7
SmiI	ATTTAAAT	1 cut(s)	1824
SmiMI	CAYNNNNRTG	4 cut(s)	536, 942, 2201, 2412
SmlI	CTYRAG	6 cut(s)	176, 671, 1408, 1633, 2340, 2501
SmoI	CTYRAG	6 cut(s)	176, 671, 1408, 1633, 2340, 2501
SpeI	ACTAGT	1 cut(s)	1561
SsiI	CCGC	5 cut(s)	2366, 2731, 2824, 2954, 3053
SspMI	CTAG	4 cut(s)	438, 636, 1482, 1562
StyD4I	CCNGG	9 cut(s)	4, 5, 139, 409, 1301, 1339, 2612, 2758, 2858
StyI	CCWWGG	2 cut(s)	291, 1492
SwaI	ATTTAAAT	1 cut(s)	1824
TaaI	ACNGT	5 cut(s)	1048, 1180, 1535, 2215, 2882
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	4 cut(s)	500, 672, 887, 2139
TaqII	GACCGA	1 cut(s)	1904
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	3056
TfiI	GAWTC	9 cut(s)	362, 587, 859, 1196, 1850, 2171, 2417, 2555, 2914
TscAI	CASTG	7 cut(s)	24, 616, 1351, 1659, 2164, 2206, 2913
TseFI	GTSAC	3 cut(s)	1898, 2590, 2788
TseI	GCWGC	6 cut(s)	878, 895, 1599, 2363, 2728, 2965
Tsp45I	GTSAC	3 cut(s)	1898, 2590, 2788
TspGWI	ACGGA	2 cut(s)	996, 3067
TspMI	CCCGGG	1 cut(s)	5
TspRI	CASTG	7 cut(s)	24, 616, 1351, 1659, 2164, 2206, 2913
Van91I	CCANNNNNTGG	2 cut(s)	1308, 1346
VneI	GTGCAC	2 cut(s)	1655, 1814
VpaK11BI	GGWCC	3 cut(s)	398, 1887, 2396
XagI	CCTNNNNNAGG	1 cut(s)	2776
XapI	RAATTY	3 cut(s)	231, 1215, 2585
XceI	RCATGY	3 cut(s)	750, 2135, 2632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	671
XmaI	CCCGGG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	3040
XmnI	GAANNNNTTC	2 cut(s)	1563, 1854
XspI	CTAG	4 cut(s)	438, 636, 1482, 1562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.