Rorug04G0314100

Plant protein of unknown function (DUF863)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007903
Physical Location & Seq
Reverse (-)
48879123 .. 48884317
5195 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0314100.1

Sequence Viewer

Length: 1104 bp
ATGGGAAAAAGACGAGGCAAGCGTCTAAGCAAAAGAGGCCTAACTAGAGATCATGACGGTAGGATTAGGAAGAGTTTTACAAAGGAAAAGAAGAAATCTAAGAAGATAACCGAATCTTCCTTGCCTGAGACTGCAGCTGAGCTTAGTAGTAGTGCCAATTCTGCTTCCAATAAAGCAACTTCTTCTAGTCATGCTAATCAAGCTACTAGAGGGAAGGGTAGTGGGCAATCACATTCTGGTTTTATCTTTATGTGTAATGGAAAGACTAAACCCGAATGTTATCAGTATCGCGTTTTTGGGCTACCAATGGCAAAAGTAGAAGTTGTGAAGACAATCAAACAGGGTACACATCTATTTTTATATGACTTTGACTTGAAGCTCCTTTATGGCACATACAGCGCAACTTCGGATGGAGCATTAGATTTGGAGCCAATTGCGTTCAAGGGAAAATTTCCTGCACAGGTCAGGTTTAAGATTTCCAAGGATTGTTTACCGCTTCACGAAAGTTCTTTTAAAACAGCCATAAGAGACAATTACCAGGGTGGTGGTAAGTTTAAACAAGAGCTGAATAACAAACAGGTGCGTGCTCTGATCTCATTGTTCCGCCCAATCACTGCATCAATGCCTACTTCTGCTGCCCATCACCGAGATGTGGCAAGAACAGGCTCATATCCATCTCCTATTAGGGAAGAAGGATTTCATCCAACAGCAAGGCCGTCTCTTCAAGAGGGCTTATATTTATCTAGTGTACAACGTGCTCATGCATTGCCACTTCTTAATACGCAATCCATACAGGTTGTTCCATATCCACATTTTACAAAATATGAAGCAGAAAGATGTGTGGCACGTGTTCAGCCTCCCATAGAGCCTCGAGATGTTGTTCAGCATCAGCCAGATTCGTATTATCTAGCAGCGGCCCATGAGCCATACGTGCCTGAAAAACCTTTCTTGTCCTCTCATGATGCATATAGAAGGCATGGGGTCACACTTCCACAGGAGATGGTTCCTAGGGATCAAGATGTTTCATATGGAAGTGTGTATCGCTTGTCACAGTTGCTGAAGGAGAGAGAGAGATATTGTTTCCCATTCCGATTATATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF863

Protein Analysis

367

Amino Acids

41.45

Weight (kDa)

9.74

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dev_Cell_Death PF10539 80 - 201 1.3e-49 Development and cell death domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 291
AciI CCGC 3 cut(s) 494, 604, 914
AclWI GGATC 1 cut(s) 1020
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 1 cut(s) 1079
AcvI CACGTG 1 cut(s) 848
AfaI GTAC 2 cut(s) 346, 750
AfiI CCNNNNNNNGG 1 cut(s) 652
AflIII ACRYGT 1 cut(s) 847
AgsI TTSAA 3 cut(s) 376, 442, 725
AjnI CCWGG 1 cut(s) 537
AluBI AGCT 5 cut(s) 137, 142, 203, 379, 565
AluI AGCT 5 cut(s) 137, 142, 203, 379, 565
Alw21I GWGCWC 2 cut(s) 589, 760
Alw26I GTCTC 3 cut(s) 122, 522, 723
AlwI GGATC 1 cut(s) 1020
AlwNI CAGNNNCTG 1 cut(s) 1057
Ama87I CYCGRG 1 cut(s) 870
AoxI GGCC 3 cut(s) 37, 713, 915
ApeKI GCWGC 3 cut(s) 134, 635, 911
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 1 cut(s) 696
AspA2I CCTAGG 1 cut(s) 1007
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 916
AsuHPI GGTGA 1 cut(s) 635
AvaI CYCGRG 1 cut(s) 870
AvrII CCTAGG 1 cut(s) 1007
BbrPI CACGTG 1 cut(s) 848
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 2 cut(s) 589, 760
BbvI GCAGC 3 cut(s) 146, 622, 923
BccI CCATC 4 cut(s) 404, 648, 682, 994
BceAI ACGGC 1 cut(s) 700
BcgI CGANNNNNNTGC 1 cut(s) 1080
BciT130I CCWGG 1 cut(s) 539
BcoDI GTCTC 3 cut(s) 122, 522, 723
BfaI CTAG 6 cut(s) 45, 186, 207, 744, 908, 1008
BfmI CTRYAG 1 cut(s) 132
BisI GCNGC 4 cut(s) 135, 636, 912, 915
BlnI CCTAGG 1 cut(s) 1007
BlpI GCTNAGC 1 cut(s) 138
BlsI GCNGC 4 cut(s) 136, 637, 913, 916
Bme1390I CCNGG 1 cut(s) 539
BmeT110I CYCGRG 1 cut(s) 870
BmgT120I GGNCC 1 cut(s) 916
BmiI GGNNCC 2 cut(s) 429, 1005
BmrFI CCNGG 1 cut(s) 539
BmsI GCATC 3 cut(s) 626, 895, 952
BpiI GAAGAC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 138
BsaAI YACGTR 2 cut(s) 848, 931
BsaJI CCNNGG 3 cut(s) 480, 538, 1007
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse3DI GCAATG 1 cut(s) 764
BseBI CCWGG 1 cut(s) 539
BseDI CCNNGG 3 cut(s) 480, 538, 1007
BseGI GGATG 2 cut(s) 415, 700
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 764
BseMII CTCAG 2 cut(s) 117, 129
BseXI GCAGC 3 cut(s) 146, 622, 923
BsgI GTGCAG 1 cut(s) 441
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 3 cut(s) 39, 715, 917
BsiHKAI GWGCWC 2 cut(s) 589, 760
BsiHKCI CYCGRG 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 3 cut(s) 122, 522, 723
BsmBI CGTCTC 1 cut(s) 723
BsnI GGCC 3 cut(s) 39, 715, 917
BsoBI CYCGRG 1 cut(s) 870
Bsp1286I GDGCHC 2 cut(s) 589, 760
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 3 cut(s) 49, 591, 1012
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 3 cut(s) 494, 604, 914
BspANI GGCC 3 cut(s) 39, 715, 917
BspCNI CTCAG 2 cut(s) 118, 130
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 2 cut(s) 52, 958
BspLI GGNNCC 2 cut(s) 429, 1005
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 1020
BsrDI GCAATG 1 cut(s) 764
BsrGI TGTACA 1 cut(s) 748
BssECI CCNNGG 3 cut(s) 480, 538, 1007
BssMI GATC 3 cut(s) 49, 591, 1012
BssT1I CCWWGG 2 cut(s) 480, 1007
Bst2UI CCWGG 1 cut(s) 539
Bst4CI ACNGT 2 cut(s) 59, 1053
Bst6I CTCTTC 2 cut(s) 65, 726
BstAUI TGTACA 1 cut(s) 748
BstBAI YACGTR 2 cut(s) 848, 931
BstC8I GCNNGC 2 cut(s) 20, 585
BstDEI CTNAG 5 cut(s) 26, 99, 126, 138, 143
BstF5I GGATG 2 cut(s) 415, 700
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 52, 594, 1015
BstMAI GTCTC 3 cut(s) 122, 522, 723
BstMBI GATC 3 cut(s) 49, 591, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 36, 161, 200, 396, 931
BstNI CCWGG 1 cut(s) 539
BstSCI CCNGG 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 132
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 3 cut(s) 146, 622, 923
BstV2I GAAGAC 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 545
BsuRI GGCC 3 cut(s) 39, 715, 917
BtsCI GGATG 2 cut(s) 415, 700
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 2 cut(s) 20, 585
CaiI CAGNNNCTG 1 cut(s) 1057
CciI TCATGA 2 cut(s) 52, 958
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 916
CseI GACGC 1 cut(s) 11
Csp6I GTAC 2 cut(s) 345, 749
CviAII CATG 6 cut(s) 53, 191, 761, 920, 959, 977
CviQI GTAC 2 cut(s) 345, 749
DdeI CTNAG 5 cut(s) 26, 99, 126, 138, 143
DpnI GATC 3 cut(s) 51, 593, 1014
DpnII GATC 3 cut(s) 49, 591, 1012
DraI TTTAAA 2 cut(s) 514, 556
Eam1104I CTCTTC 2 cut(s) 65, 726
EarI CTCTTC 2 cut(s) 65, 726
EciI GGCGGA 1 cut(s) 593
Eco130I CCWWGG 2 cut(s) 480, 1007
Eco147I AGGCCT 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 1079
Eco72I CACGTG 1 cut(s) 848
Eco88I CYCGRG 1 cut(s) 870
EcoRII CCWGG 1 cut(s) 537
EcoT14I CCWWGG 2 cut(s) 480, 1007
EcoT22I ATGCAT 2 cut(s) 766, 967
ErhI CCWWGG 2 cut(s) 480, 1007
Esp3I CGTCTC 1 cut(s) 723
FaeI CATG 6 cut(s) 56, 194, 764, 923, 962, 980
FatI CATG 6 cut(s) 52, 190, 760, 919, 958, 976
FauNDI CATATG 1 cut(s) 1027
Fnu4HI GCNGC 4 cut(s) 135, 636, 912, 915
FokI GGATG 2 cut(s) 422, 687
Fsp4HI GCNGC 4 cut(s) 135, 636, 912, 915
FspBI CTAG 6 cut(s) 45, 186, 207, 744, 908, 1008
GlaI GCGC 1 cut(s) 400
GluI GCNGC 4 cut(s) 135, 636, 912, 915
HaeIII GGCC 3 cut(s) 39, 715, 917
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 401
Hin1II CATG 6 cut(s) 56, 194, 764, 923, 962, 980
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HinfI GANTC 2 cut(s) 113, 896
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 3 cut(s) 347, 491, 749
Hpy188I TCNGA 3 cut(s) 409, 591, 1091
Hpy188III TCNNGA 6 cut(s) 53, 500, 725, 872, 959, 1016
Hpy8I GTNNAC 3 cut(s) 347, 491, 749
HpyAV CCTTC 4 cut(s) 208, 686, 966, 1054
HpyCH4III ACNGT 2 cut(s) 59, 1053
HpyCH4IV ACGT 3 cut(s) 754, 847, 930
HpyCH4V TGCA 5 cut(s) 134, 458, 617, 764, 965
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 161, 200, 396, 931
HpyF3I CTNAG 5 cut(s) 26, 99, 126, 138, 143
HpySE526I ACGT 3 cut(s) 754, 847, 930
Hsp92II CATG 6 cut(s) 56, 194, 764, 923, 962, 980
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 3 cut(s) 49, 591, 1012
LmnI GCTCC 3 cut(s) 384, 413, 427
Lsp1109I GCAGC 3 cut(s) 146, 622, 923
LweI GCATC 3 cut(s) 626, 895, 952
MaeI CTAG 6 cut(s) 45, 186, 207, 744, 908, 1008
MaeII ACGT 3 cut(s) 754, 847, 930
MaeIII GTNAC 2 cut(s) 982, 1047
MalI GATC 3 cut(s) 51, 593, 1014
MboI GATC 3 cut(s) 49, 591, 1012
MboII GAAGA 8 cut(s) 82, 103, 108, 115, 174, 340, 701, 713
MfeI CAATTG 1 cut(s) 432
MhlI GDGCHC 2 cut(s) 589, 760
MluCI AATT 4 cut(s) 157, 432, 449, 532
MmeI TCCRAC 1 cut(s) 728
MnlI CCTC 7 cut(s) 8, 29, 203, 721, 867, 879, 964
Mph1103I ATGCAT 2 cut(s) 766, 967
MroXI GAANNNNTTC 1 cut(s) 696
MseI TTAA 4 cut(s) 471, 513, 555, 777
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 137, 914
MspR9I CCNGG 1 cut(s) 539
MssI GTTTAAAC 1 cut(s) 556
MunI CAATTG 1 cut(s) 432
MvaI CCWGG 1 cut(s) 539
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 36, 161, 200, 396, 931
NdeI CATATG 1 cut(s) 1027
NdeII GATC 3 cut(s) 49, 591, 1012
NlaIII CATG 6 cut(s) 56, 194, 764, 923, 962, 980
NlaIV GGNNCC 2 cut(s) 429, 1005
NmuCI GTSAC 2 cut(s) 982, 1047
NsiI ATGCAT 2 cut(s) 766, 967
PaeR7I CTCGAG 1 cut(s) 870
PagI TCATGA 2 cut(s) 52, 958
PceI AGGCCT 1 cut(s) 39
PcsI WCGNNNNNNNCGW 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 696
PfeI GAWTC 2 cut(s) 113, 896
PkrI GCNGC 4 cut(s) 136, 637, 913, 916
PmaCI CACGTG 1 cut(s) 848
PmeI GTTTAAAC 1 cut(s) 556
PmlI CACGTG 1 cut(s) 848
Ppu21I YACGTR 2 cut(s) 848, 931
Psp6I CCWGG 1 cut(s) 537
PspCI CACGTG 1 cut(s) 848
PspGI CCWGG 1 cut(s) 537
PspN4I GGNNCC 2 cut(s) 429, 1005
PspPI GGNCC 1 cut(s) 916
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 1057
PvuII CAGCTG 1 cut(s) 137
RsaI GTAC 2 cut(s) 346, 750
RsaNI GTAC 2 cut(s) 345, 749
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 4 cut(s) 471, 513, 555, 777
SatI GCNGC 4 cut(s) 135, 636, 912, 915
Sau3AI GATC 3 cut(s) 49, 591, 1012
Sau96I GGNCC 1 cut(s) 916
ScrFI CCNGG 1 cut(s) 539
SduI GDGCHC 2 cut(s) 589, 760
SfaNI GCATC 3 cut(s) 626, 895, 952
SfcI CTRYAG 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 870
SlaI CTCGAG 1 cut(s) 870
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 4 cut(s) 157, 432, 449, 532
SseBI AGGCCT 1 cut(s) 39
SsiI CCGC 3 cut(s) 494, 604, 914
SspMI CTAG 6 cut(s) 45, 186, 207, 744, 908, 1008
StuI AGGCCT 1 cut(s) 39
StyD4I CCNGG 1 cut(s) 537
StyI CCWWGG 2 cut(s) 480, 1007
TaaI ACNGT 2 cut(s) 59, 1053
TaiI ACGT 3 cut(s) 757, 850, 933
TaqI TCGA 1 cut(s) 871
TasI AATT 4 cut(s) 157, 432, 449, 532
TatI WGTACW 1 cut(s) 748
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 2 cut(s) 113, 896
Tru1I TTAA 4 cut(s) 471, 513, 555, 777
Tru9I TTAA 4 cut(s) 471, 513, 555, 777
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 2 cut(s) 982, 1047
TseI GCWGC 3 cut(s) 134, 635, 911
Tsp45I GTSAC 2 cut(s) 982, 1047
TspDTI ATGAA 3 cut(s) 689, 840, 1014
TspRI CASTG 1 cut(s) 619
XapI RAATTY 1 cut(s) 449
XhoI CTCGAG 1 cut(s) 870
XmaJI CCTAGG 1 cut(s) 1007
XmnI GAANNNNTTC 1 cut(s) 696
XspI CTAG 6 cut(s) 45, 186, 207, 744, 908, 1008
Zsp2I ATGCAT 2 cut(s) 766, 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.