MD13G1076100.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
5400078 .. 5404191
4114 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1076100.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGGCAACTGTTTAGGTTCTTCTGCTAAAGTCGATACCGCACATAGCTCCTTTGGAACTTCGGGATCAGGGGTTTCCAAAGTTTCCAGCAAAACTAACCCTTCCTCAGTTCCCTCCACTTTGACCGTCCCATCGTATAGTGGAAGGAGCAATGCTTCAAGTCTTCCTACCCCAAGGACTGAAGGCGAAATATTGTCATGTCCAAATTTGAAACCCTTCTCATTCAATGAGCTAAAGACTGCCACCAGAAACTTTCGCCCTGACAGTCTTCTCGGTGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATTAATGGGGGCACAATGACAGCTGCAAAACCGGGGTCCGGAATGGTTGTTGCTGTCAAGAAGCTCAAACCTGAAGGTTTCCAAGGCCACAAGGAGTGGTTGACAGAAGTAAATTATCTTGGTCAACTCCATCATCCAAATCTGGTTAAGCTTATCGGATACTGCTTAGAGGGTGAGAACCGCCTTCTGGTGTATGAGTTTTTGCCAAAAGGAAGCCTAGAGAATCATCTGTTTAGAAGAGGGCCGCAACCACTTTCATGGCCAACAAGAATGAAAGTAGCCATAGGTGCTGCAAAGGGGCTCAGTTTTCTTCATGAGGCAGAGTCACAAGTCATATATCGTGATTTTAAGGCTTCTAATATTTTATTAGATTCGGAATTCAACGCGAAGCTTTCTGATTTTGGCTTGGCTAAGGCTGGTCCGACTGGTGACAGGACTCACGTGTCTACTCAAGTCATGGGTACTCAAGGCTACGCAGCACCCGAATATGTTGCTACAGGTAGATTGACTGCCAAAAGTGACGTCTATAGTTTTGGGGTTGTACTGCTGGAACTACTGTCTGGAAGGCGAGCTGTTGATAAAACGAAAGTTGGTGCGGAGCAGAACCTGGTAGACTGGACAAAACCATATTTGGGTGACAGAAGAAAACTATTTCGGATTATGGACACCAAGTTGGAGGGCCAATATCCCCAGAAAGCAGCTTATACAGCTGCTACCCTTGCTTCACAATGCCTATGCCCCGAATCTAAACTCAGGCCCACAATGTCAGTGGTATTAGCAACGCTGGAACAACTTGAATCCCCAAAGACTGCAGCCAGAAACTCTCAATCAGAACAGCAGACACTTCGTATTCCTCGGAAGTCGCCAATGCGACAACACCGTTCTCCTCTCAATGTACCACCAAACGCATCCCCATTGGCATACCAAAGGCAATCTCCACGCGTGCGTTGA

Protein Analysis

420

Amino Acids

45.71

Weight (kDa)

9.74

Isoelectric Point (pI)

37.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 88 - 362 8.1e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 89 - 363 4.7e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 751
AatII GACGTC 1 cut(s) 834
AccI GTMKAC 2 cut(s) 755, 921
AccII CGCG 2 cut(s) 695, 1251
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 4 cut(s) 39, 490, 554, 905
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 569
AcsI RAATTY 2 cut(s) 205, 686
AcuI CTGAAG 2 cut(s) 201, 402
AcvI CACGTG 1 cut(s) 751
AcyI GRCGYC 1 cut(s) 831
AfaI GTAC 3 cut(s) 772, 852, 1206
AfiI CCNNNNNNNGG 3 cut(s) 347, 496, 941
AflIII ACRYGT 2 cut(s) 750, 1249
AgsI TTSAA 6 cut(s) 159, 211, 226, 301, 691, 1106
AjnI CCWGG 1 cut(s) 915
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 9 cut(s) 48, 232, 332, 373, 460, 700, 881, 1010, 1019
AluI AGCT 9 cut(s) 48, 232, 332, 373, 460, 700, 881, 1010, 1019
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 916
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 5 cut(s) 394, 551, 569, 988, 1064
ApeKI GCWGC 6 cut(s) 332, 599, 785, 1007, 1019, 1121
ApoI RAATTY 2 cut(s) 205, 686
ArsI GACNNNNNNTTYG 4 cut(s) 329, 361, 816, 848
AseI ATTAAT 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 215
AspS9I GGNCC 5 cut(s) 345, 551, 728, 988, 1065
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 4 cut(s) 287, 494, 749, 956
AvaII GGWCC 2 cut(s) 345, 728
BaeGI GKGCMC 1 cut(s) 323
BalI TGGCCA 1 cut(s) 571
BanII GRGCYC 1 cut(s) 612
BbrPI CACGTG 1 cut(s) 751
BbsI GAAGAC 2 cut(s) 155, 260
BbvI GCAGC 6 cut(s) 319, 586, 797, 1006, 1019, 1133
BccI CCATC 3 cut(s) 139, 300, 447
BcgI CGANNNNNNTGC 4 cut(s) 782, 816, 1136, 1170
BciT130I CCWGG 1 cut(s) 917
BciVI GTATCC 1 cut(s) 461
BcnI CCSGG 1 cut(s) 342
BfaI CTAG 1 cut(s) 527
BfmI CTRYAG 3 cut(s) 804, 835, 1119
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
BlsI GCNGC 7 cut(s) 334, 555, 601, 787, 1009, 1021, 1123
Bme1390I CCNGG 2 cut(s) 342, 917
Bme18I GGWCC 2 cut(s) 345, 728
BmgT120I GGNCC 5 cut(s) 345, 551, 728, 988, 1065
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 2 cut(s) 342, 917
BmsI GCATC 1 cut(s) 1226
BpiI GAAGAC 2 cut(s) 155, 260
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 744, 759
BpuMI CCSGG 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 751
BsaHI GRCGYC 1 cut(s) 831
BsaJI CCNNGG 4 cut(s) 173, 341, 391, 1163
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 496, 941
Bse1I ACTGG 2 cut(s) 739, 929
Bse3DI GCAATG 1 cut(s) 157
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 1 cut(s) 917
BseDI CCNNGG 4 cut(s) 173, 341, 391, 1163
BseGI GGATG 3 cut(s) 311, 442, 1217
BseLI CCNNNNNNNGG 3 cut(s) 347, 496, 941
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 3 cut(s) 120, 625, 1075
BseNI ACTGG 2 cut(s) 739, 929
BseRI GAGGAG 1 cut(s) 1185
BseSI GKGCMC 1 cut(s) 323
BseXI GCAGC 6 cut(s) 319, 586, 797, 1006, 1019, 1133
Bsh1236I CGCG 2 cut(s) 695, 1251
BshFI GGCC 5 cut(s) 396, 553, 571, 990, 1066
BsiSI CCGG 2 cut(s) 341, 348
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 3 cut(s) 347, 496, 941
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 5 cut(s) 396, 553, 571, 990, 1066
Bsp1286I GDGCHC 2 cut(s) 323, 612
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 4 cut(s) 39, 490, 554, 905
BspANI GGCC 5 cut(s) 396, 553, 571, 990, 1066
BspCNI CTCAG 3 cut(s) 119, 624, 1074
BspEI TCCGGA 1 cut(s) 347
BspFNI CGCG 2 cut(s) 695, 1251
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 346
BspMAI CTGCAG 1 cut(s) 1123
BspPI GGATC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 2 cut(s) 739, 929
BssECI CCNNGG 4 cut(s) 173, 341, 391, 1163
BssMI GATC 1 cut(s) 65
BssNI GRCGYC 1 cut(s) 831
BssT1I CCWWGG 2 cut(s) 173, 391
Bst2UI CCWGG 1 cut(s) 917
Bst4CI ACNGT 5 cut(s) 11, 127, 266, 867, 1190
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 831
BstBAI YACGTR 1 cut(s) 751
BstC8I GCNNGC 2 cut(s) 879, 1253
BstDEI CTNAG 5 cut(s) 106, 475, 611, 720, 1061
BstF5I GGATG 3 cut(s) 311, 442, 1217
BstFNI CGCG 2 cut(s) 695, 1251
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
BstNI CCWGG 1 cut(s) 917
BstSCI CCNGG 2 cut(s) 340, 915
BstSFI CTRYAG 3 cut(s) 804, 835, 1119
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 2 cut(s) 695, 1251
BstV1I GCAGC 6 cut(s) 319, 586, 797, 1006, 1019, 1133
BstV2I GAAGAC 2 cut(s) 155, 260
BstXI CCANNNNNNTGG 1 cut(s) 567
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 5 cut(s) 396, 553, 571, 990, 1066
BtsCI GGATG 3 cut(s) 311, 442, 1217
BtsIMutI CAGTG 1 cut(s) 1083
Cac8I GCNNGC 2 cut(s) 879, 1253
CaiI CAGNNNCTG 1 cut(s) 916
CciI TCATGA 1 cut(s) 622
Cfr13I GGNCC 5 cut(s) 345, 551, 728, 988, 1065
CsiI ACCWGGT 1 cut(s) 915
Csp6I GTAC 3 cut(s) 771, 851, 1205
CspCI CAANNNNNGTGG 2 cut(s) 1059, 1094
CviAII CATG 4 cut(s) 198, 567, 623, 766
CviQI GTAC 3 cut(s) 771, 851, 1205
DdeI CTNAG 5 cut(s) 106, 475, 611, 720, 1061
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DrdI GACNNNNNNGTC 1 cut(s) 751
DseDI GACNNNNNNGTC 1 cut(s) 751
EaeI YGGCCR 1 cut(s) 569
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 173, 391
Eco24I GRGCYC 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 345, 728
Eco57I CTGAAG 2 cut(s) 201, 402
Eco72I CACGTG 1 cut(s) 751
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 915
EcoT14I CCWWGG 2 cut(s) 173, 391
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 173, 391
FaeI CATG 4 cut(s) 201, 570, 626, 769
FaqI GGGAC 1 cut(s) 113
FatI CATG 4 cut(s) 197, 566, 622, 765
FblI GTMKAC 2 cut(s) 755, 921
Fnu4HI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
FokI GGATG 3 cut(s) 318, 429, 1204
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
FspBI CTAG 1 cut(s) 527
GluI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
HaeIII GGCC 5 cut(s) 396, 553, 571, 990, 1066
HapII CCGG 2 cut(s) 341, 348
Hin1I GRCGYC 1 cut(s) 831
Hin1II CATG 4 cut(s) 201, 570, 626, 769
HincII GTYRAC 2 cut(s) 411, 434
HindII GTYRAC 2 cut(s) 411, 434
HindIII AAGCTT 2 cut(s) 458, 698
HinfI GANTC 6 cut(s) 532, 632, 680, 745, 1052, 1106
HpaII CCGG 2 cut(s) 341, 348
HphI GGTGA 4 cut(s) 287, 494, 749, 956
Hpy166II GTNNAC 4 cut(s) 411, 434, 756, 922
Hpy188I TCNGA 7 cut(s) 467, 685, 706, 732, 966, 1141, 1167
Hpy188III TCNNGA 6 cut(s) 63, 348, 367, 623, 650, 870
Hpy8I GTNNAC 4 cut(s) 411, 434, 756, 922
HpyAV CCTTC 8 cut(s) 111, 138, 176, 226, 272, 377, 503, 867
HpyCH4III ACNGT 5 cut(s) 11, 127, 266, 867, 1190
HpyCH4IV ACGT 2 cut(s) 750, 831
HpyCH4V TGCA 3 cut(s) 335, 602, 1121
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
HpyF3I CTNAG 5 cut(s) 106, 475, 611, 720, 1061
HpySE526I ACGT 2 cut(s) 750, 831
Hsp92I GRCGYC 1 cut(s) 831
Hsp92II CATG 4 cut(s) 201, 570, 626, 769
Kpn2I TCCGGA 1 cut(s) 347
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 3 cut(s) 53, 147, 907
Lsp1109I GCAGC 6 cut(s) 319, 586, 797, 1006, 1019, 1133
LweI GCATC 1 cut(s) 1226
MabI ACCWGGT 1 cut(s) 915
MaeI CTAG 1 cut(s) 527
MaeII ACGT 2 cut(s) 750, 831
MaeIII GTNAC 4 cut(s) 633, 737, 827, 944
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 6 cut(s) 12, 155, 260, 558, 611, 963
MhlI GDGCHC 2 cut(s) 323, 612
MlsI TGGCCA 1 cut(s) 571
MluCI AATT 3 cut(s) 205, 421, 686
MluI ACGCGT 1 cut(s) 1249
MluNI TGGCCA 1 cut(s) 571
MlyI GAGTC 2 cut(s) 641, 739
MmeI TCCRAC 2 cut(s) 755, 963
MnlI CCTC 9 cut(s) 115, 124, 275, 472, 542, 619, 979, 1173, 1206
Mox20I TGGCCA 1 cut(s) 571
MroI TCCGGA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 215
MscI TGGCCA 1 cut(s) 571
MseI TTAA 3 cut(s) 312, 456, 657
MslI CAYNNNNRTG 1 cut(s) 565
Msp20I TGGCCA 1 cut(s) 571
MspA1I CMGCKG 2 cut(s) 332, 1019
MspI CCGG 2 cut(s) 341, 348
MspR9I CCNGG 2 cut(s) 342, 917
MvaI CCWGG 1 cut(s) 917
MvnI CGCG 2 cut(s) 695, 1251
MwoI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
NciI CCSGG 1 cut(s) 342
NdeII GATC 1 cut(s) 65
NlaIII CATG 4 cut(s) 201, 570, 626, 769
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 4 cut(s) 633, 737, 827, 944
PagI TCATGA 1 cut(s) 622
PcsI WCGNNNNNNNCGW 1 cut(s) 789
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 4 cut(s) 532, 680, 1052, 1106
PkrI GCNGC 7 cut(s) 334, 555, 601, 787, 1009, 1021, 1123
PleI GAGTC 2 cut(s) 640, 739
PmaCI CACGTG 1 cut(s) 751
PmlI CACGTG 1 cut(s) 751
PpsI GAGTC 2 cut(s) 640, 739
Ppu21I YACGTR 1 cut(s) 751
PshBI ATTAAT 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 915
PspCI CACGTG 1 cut(s) 751
PspGI CCWGG 1 cut(s) 915
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 5 cut(s) 345, 551, 728, 988, 1065
PstI CTGCAG 1 cut(s) 1123
PstNI CAGNNNCTG 1 cut(s) 916
PvuII CAGCTG 2 cut(s) 332, 1019
RsaI GTAC 3 cut(s) 772, 852, 1206
RsaNI GTAC 3 cut(s) 771, 851, 1205
RseI CAYNNNNRTG 1 cut(s) 565
SaqAI TTAA 3 cut(s) 312, 456, 657
SatI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 5 cut(s) 345, 551, 728, 988, 1065
SchI GAGTC 2 cut(s) 641, 739
ScrFI CCNGG 2 cut(s) 342, 917
SduI GDGCHC 2 cut(s) 323, 612
SexAI ACCWGGT 1 cut(s) 915
SfaNI GCATC 1 cut(s) 1226
SfcI CTRYAG 3 cut(s) 804, 835, 1119
SinI GGWCC 2 cut(s) 345, 728
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 2 cut(s) 759, 774
SmoI CTYRAG 2 cut(s) 759, 774
Sse9I AATT 3 cut(s) 205, 421, 686
SsiI CCGC 4 cut(s) 39, 490, 554, 905
SspI AATATT 2 cut(s) 192, 670
SspMI CTAG 1 cut(s) 527
StyD4I CCNGG 2 cut(s) 340, 915
StyI CCWWGG 2 cut(s) 173, 391
TaaI ACNGT 5 cut(s) 11, 127, 266, 867, 1190
TaiI ACGT 2 cut(s) 753, 834
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 205, 421, 686
TatI WGTACW 1 cut(s) 850
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 4 cut(s) 532, 680, 1052, 1106
Tru1I TTAA 3 cut(s) 312, 456, 657
Tru9I TTAA 3 cut(s) 312, 456, 657
TscAI CASTG 1 cut(s) 1083
TseFI GTSAC 4 cut(s) 633, 737, 827, 944
TseI GCWGC 6 cut(s) 332, 599, 785, 1007, 1019, 1121
Tsp45I GTSAC 4 cut(s) 633, 737, 827, 944
TspDTI ATGAA 3 cut(s) 555, 596, 611
TspRI CASTG 1 cut(s) 1083
VpaK11BI GGWCC 2 cut(s) 345, 728
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 205, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 1075
XmiI GTMKAC 2 cut(s) 755, 921
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 527
ZraI GACGTC 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.