Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0007179

Physical Location & Seq

Genomic Coordinates Forward (+)

60010215 .. 60013806

Gene Structure 3592 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG382600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGCAACTGTTTAGATTCTTCTGCTAAAGTTGACACAGCTCAGAGCTGTCTTGGTACTTCAGCATCGGGGACTTCCAAAAATTCCAGCAAAACCAGTTCCTCATCAGCTGCTCCCTCCACCTTGACCATTTCATCATATAGTGAAAAGAGCAATGGTTCAAGTCTTCCTACCCCAAGGACTGAAGGTGAAATATTGTCTTCTCCAAATCTAAACCCGTTCTCATTCATTGAGCTAAGGAATGCCACCAGGAACTTTCGCCCTGACAGTCTTCTCGGCGAGGGAGGATTTGGTTATGTCTTCAAAGGATGGATTAATGAAACCACGTTTACAGCTGCAAAGCCAGGGTCAGGAATGGTTGTAGCTGTCAAGAAGCTCAAACCTGAAGGTTTCCAAGGTCACAAGGAGTGGTTGACAGAAGTTAATTATCTTGGCCAACTCTATCATCCAAATCTTGTTAAGCTTATTGGGTACTGCTTGGAAGGTGAAAACCGACTATTGGTGTATGAGTTCATGCCAAAAGGAAGCTTAGAGAATCATCTATTCAGAAGAGGGCCACAACCACTTTCATGGGGAATAAGAATGAAAGTCGCCATAGGTGCTGCCAGGGGGCTAAAATTTCTTCATGAAGCCGAATCACAAGTTATTTATCGTGATTTTAAGGCTTCCAATATTTTACTTGATGCGGAATTCAATGCGAAACTTTCTGATTTTGGCCTGGCCAAGGCGGGTCCCACGGGTGACAGGACCCATGTTTCTACTCAAGTCATGGGTACTCAAGGCTATGCAGCACCTGAATATGTTGCTACAGGTCGATTGACTGCTAAAAGTGACGTTTATAGTTTTGGGGTTGTATTGTTGGAACTATTGTCTGGACGGCGAGCTGTTGATAAAACAAAAGTTGGCGTGGAGCAGAATCTTGTAGACTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGACACCAAGTTGGAGGGTCAATATCCTCAGAAATCAGCCTATACAGCTGCTACTCTGGCTTTACAGTGCCTAAGCCCAGAATCTAAACAAAGGCCTACAATGTCAACAGTTTTAGCAACACTGGAACAACTTGATGCCCCCAAAACTGCTGCCAGAATCTCTCAATCAGAGCAGCAGGGAGTTCCTCTTCATCACCACAGGTCCCCAATGCGACATCACCGTTCTCCTTTAAATTTAACACCCAGTGCATCTCCATTGCCATCGCACCGGTCGTCTGCATGTGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030957 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

421

Amino Acids

45.92

Weight (kDa)

9.42

Isoelectric Point (pI)

42.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	89 - 364	6.6e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	90 - 365	1e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14370 AT1G26970 AT1G26970 AT1G69790 AT1G69790 AT2G02800 AT2G02800
fragaria_vesca	FvH4_4g31680 FvH4_4g31680 FvH4_4g31680
malus_domestica	MD13G1076100.v1.1 MD16G1076300.v1.1
prunus_persica	Prupe.1G270700_v2.0.a1 Prupe.1G270700_v2.0.a1
pyrus_communis	pycom16g06630
rosa_chinensis	RchiOBHm_Chr4g0440191
rosa_laevigata	RLG00000006197
rosa_multiflora	Rmu_sc0001685.1_g000027
rosa_roxburghii	Rroxscaffold_5G00381120
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375900 Rh4BG388900 Rh4CG403400 Rh4DG382600
rosa_wichuraiana	Rw4G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	924
AciI	CCGC	2 cut(s)	686, 728
AcoI	YGGCCR	2 cut(s)	433, 720
AcsI	RAATTY	4 cut(s)	82, 617, 689, 1207
AcuI	CTGAAG	3 cut(s)	45, 204, 405
AdeI	CACNNNGTG	1 cut(s)	1220
AfaI	GTAC	3 cut(s)	58, 473, 775
AfiI	CCNNNNNNNGG	4 cut(s)	350, 499, 724, 944
AgeI	ACCGGT	1 cut(s)	1242
AgsI	TTSAA	3 cut(s)	162, 304, 694
AjnI	CCWGG	4 cut(s)	248, 343, 605, 717
AlwNI	CAGNNNCTG	1 cut(s)	794
AoxI	GGCC	5 cut(s)	433, 554, 715, 720, 1067
ApeKI	GCWGC	7 cut(s)	110, 335, 602, 788, 1022, 1124, 1147
ApoI	RAATTY	4 cut(s)	82, 617, 689, 1207
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AseI	ATTAAT	1 cut(s)	315
AsiGI	ACCGGT	1 cut(s)	1242
AspS9I	GGNCC	4 cut(s)	554, 731, 747, 1176
AsuHPI	GGTGA	6 cut(s)	200, 497, 752, 959, 1160, 1184
AvaII	GGWCC	3 cut(s)	731, 747, 1176
BalI	TGGCCA	2 cut(s)	435, 722
BbsI	GAAGAC	4 cut(s)	158, 192, 263, 292
BbvI	GCAGC	7 cut(s)	97, 322, 589, 800, 1009, 1111, 1159
BccI	CCATC	2 cut(s)	303, 1243
BceAI	ACGGC	1 cut(s)	893
BciT130I	CCWGG	4 cut(s)	250, 345, 607, 719
BfmI	CTRYAG	1 cut(s)	807
BisI	GCNGC	7 cut(s)	111, 336, 603, 789, 1023, 1125, 1148
BlsI	GCNGC	7 cut(s)	112, 337, 604, 790, 1024, 1126, 1149
Bme1390I	CCNGG	4 cut(s)	250, 345, 607, 719
Bme18I	GGWCC	3 cut(s)	731, 747, 1176
BmgT120I	GGNCC	4 cut(s)	554, 731, 747, 1176
BmiI	GGNNCC	4 cut(s)	732, 733, 749, 1178
BmrFI	CCNGG	4 cut(s)	250, 345, 607, 719
BmrI	ACTGGG	1 cut(s)	1212
BmsI	GCATC	4 cut(s)	74, 673, 1099, 1232
BmuI	ACTGGG	1 cut(s)	1212
BpiI	GAAGAC	4 cut(s)	158, 192, 263, 292
Bpu10I	CCTNAGC	2 cut(s)	236, 1046
BpuEI	CTTGAG	2 cut(s)	747, 762
BsaJI	CCNNGG	6 cut(s)	176, 344, 394, 606, 723, 735
BsaWI	WCCGGW	1 cut(s)	1242
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 499, 724, 944
Bse118I	RCCGGY	1 cut(s)	1242
Bse1I	ACTGG	4 cut(s)	96, 932, 1101, 1218
Bse3DI	GCAATG	2 cut(s)	160, 1229
BseBI	CCWGG	4 cut(s)	250, 345, 607, 719
BseDI	CCNNGG	6 cut(s)	176, 344, 394, 606, 723, 735
BseGI	GGATG	2 cut(s)	314, 445
BseLI	CCNNNNNNNGG	4 cut(s)	350, 499, 724, 944
BseMI	GCAATG	2 cut(s)	160, 1229
BseMII	CTCAG	2 cut(s)	56, 1016
BseNI	ACTGG	4 cut(s)	96, 932, 1101, 1218
BseXI	GCAGC	7 cut(s)	97, 322, 589, 800, 1009, 1111, 1159
Bsh1285I	CGRYCG	1 cut(s)	1247
BshFI	GGCC	5 cut(s)	435, 556, 717, 722, 1069
BshTI	ACCGGT	1 cut(s)	1242
BsiEI	CGRYCG	1 cut(s)	1247
BsiSI	CCGG	1 cut(s)	1243
BslFI	GGGAC	3 cut(s)	85, 717, 1162
BslI	CCNNNNNNNGG	4 cut(s)	350, 499, 724, 944
BsmFI	GGGAC	3 cut(s)	85, 717, 1162
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	5 cut(s)	435, 556, 717, 722, 1069
BspACI	CCGC	2 cut(s)	686, 728
BspANI	GGCC	5 cut(s)	435, 556, 717, 722, 1069
BspCNI	CTCAG	2 cut(s)	55, 1015
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	4 cut(s)	732, 733, 749, 1178
BsrDI	GCAATG	2 cut(s)	160, 1229
BsrFI	RCCGGY	1 cut(s)	1242
BsrI	ACTGG	4 cut(s)	96, 932, 1101, 1218
BssAI	RCCGGY	1 cut(s)	1242
BssECI	CCNNGG	6 cut(s)	176, 344, 394, 606, 723, 735
BssT1I	CCWWGG	3 cut(s)	176, 394, 723
Bst2UI	CCWGG	4 cut(s)	250, 345, 607, 719
Bst4CI	ACNGT	5 cut(s)	11, 269, 1041, 1084, 1196
Bst6I	CTCTTC	2 cut(s)	544, 1167
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	5 cut(s)	42, 236, 529, 1002, 1046
BstDSI	CCRYGG	1 cut(s)	735
BstENI	CCTNNNNNAGG	1 cut(s)	722
BstF5I	GGATG	2 cut(s)	314, 445
BstMCI	CGRYCG	1 cut(s)	1247
BstMWI	GCNNNNNNNGC	3 cut(s)	599, 1019, 1031
BstNI	CCWGG	4 cut(s)	250, 345, 607, 719
BstNSI	RCATGY	1 cut(s)	1257
BstSCI	CCNGG	4 cut(s)	248, 343, 605, 717
BstSFI	CTRYAG	1 cut(s)	807
BstV1I	GCAGC	7 cut(s)	97, 322, 589, 800, 1009, 1111, 1159
BstV2I	GAAGAC	4 cut(s)	158, 192, 263, 292
BstXI	CCANNNNNNTGG	1 cut(s)	570
BsuRI	GGCC	5 cut(s)	435, 556, 717, 722, 1069
BtgI	CCRYGG	1 cut(s)	735
BtgZI	GCGATG	1 cut(s)	1221
BtsCI	GGATG	2 cut(s)	314, 445
BtsIMutI	CAGTG	3 cut(s)	1046, 1094, 1225
Cac8I	GCNNGC	1 cut(s)	882
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	625
Cfr10I	RCCGGY	1 cut(s)	1242
Cfr13I	GGNCC	4 cut(s)	554, 731, 747, 1176
Csp6I	GTAC	3 cut(s)	57, 472, 774
CspAI	ACCGGT	1 cut(s)	1242
CviAII	CATG	6 cut(s)	514, 570, 626, 752, 769, 1254
CviQI	GTAC	3 cut(s)	57, 472, 774
DdeI	CTNAG	5 cut(s)	42, 236, 529, 1002, 1046
DraI	TTTAAA	1 cut(s)	1206
DraIII	CACNNNGTG	1 cut(s)	1220
EaeI	YGGCCR	2 cut(s)	433, 720
Eam1104I	CTCTTC	2 cut(s)	544, 1167
EarI	CTCTTC	2 cut(s)	544, 1167
Eco130I	CCWWGG	3 cut(s)	176, 394, 723
Eco147I	AGGCCT	1 cut(s)	1069
Eco47I	GGWCC	3 cut(s)	731, 747, 1176
Eco57I	CTGAAG	3 cut(s)	45, 204, 405
EcoNI	CCTNNNNNAGG	1 cut(s)	722
EcoO109I	RGGNCCY	3 cut(s)	731, 747, 1176
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	4 cut(s)	248, 343, 605, 717
EcoT14I	CCWWGG	3 cut(s)	176, 394, 723
ErhI	CCWWGG	3 cut(s)	176, 394, 723
FaeI	CATG	6 cut(s)	517, 573, 629, 755, 772, 1257
FaqI	GGGAC	3 cut(s)	85, 717, 1162
FatI	CATG	6 cut(s)	513, 569, 625, 751, 768, 1253
FauI	CCCGC	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	7 cut(s)	111, 336, 603, 789, 1023, 1125, 1148
FokI	GGATG	2 cut(s)	321, 432
Fsp4HI	GCNGC	7 cut(s)	111, 336, 603, 789, 1023, 1125, 1148
GluI	GCNGC	7 cut(s)	111, 336, 603, 789, 1023, 1125, 1148
HaeIII	GGCC	5 cut(s)	435, 556, 717, 722, 1069
HapII	CCGG	1 cut(s)	1243
Hin1II	CATG	6 cut(s)	517, 573, 629, 755, 772, 1257
HincII	GTYRAC	3 cut(s)	34, 414, 1080
HindII	GTYRAC	3 cut(s)	34, 414, 1080
HindIII	AAGCTT	2 cut(s)	461, 526
HinfI	GANTC	6 cut(s)	17, 535, 635, 916, 1055, 1131
HpaII	CCGG	1 cut(s)	1243
HphI	GGTGA	6 cut(s)	200, 497, 752, 959, 1160, 1184
Hpy166II	GTNNAC	5 cut(s)	34, 330, 414, 925, 1080
Hpy188I	TCNGA	6 cut(s)	45, 548, 709, 969, 1005, 1144
Hpy188III	TCNNGA	5 cut(s)	351, 370, 626, 653, 873
Hpy8I	GTNNAC	5 cut(s)	34, 330, 414, 925, 1080
HpyAV	CCTTC	3 cut(s)	179, 380, 476
HpyCH4III	ACNGT	5 cut(s)	11, 269, 1041, 1084, 1196
HpyCH4IV	ACGT	2 cut(s)	326, 834
HpyCH4V	TGCA	4 cut(s)	338, 788, 1223, 1253
HpyF10VI	GCNNNNNNNGC	3 cut(s)	599, 1019, 1031
HpyF3I	CTNAG	5 cut(s)	42, 236, 529, 1002, 1046
HpySE526I	ACGT	2 cut(s)	326, 834
Hsp92II	CATG	6 cut(s)	517, 573, 629, 755, 772, 1257
KflI	GGGWCCC	1 cut(s)	731
LmnI	GCTCC	2 cut(s)	118, 910
Lsp1109I	GCAGC	7 cut(s)	97, 322, 589, 800, 1009, 1111, 1159
LweI	GCATC	4 cut(s)	74, 673, 1099, 1232
MaeII	ACGT	2 cut(s)	326, 834
MaeIII	GTNAC	4 cut(s)	398, 740, 830, 947
MboII	GAAGA	8 cut(s)	12, 158, 192, 263, 292, 561, 614, 1154
MlsI	TGGCCA	2 cut(s)	435, 722
MluCI	AATT	5 cut(s)	82, 424, 617, 689, 1207
MluNI	TGGCCA	2 cut(s)	435, 722
MmeI	TCCRAC	2 cut(s)	840, 966
MnlI	CCTC	8 cut(s)	112, 127, 274, 278, 545, 982, 1011, 1170
Mox20I	TGGCCA	2 cut(s)	435, 722
MscI	TGGCCA	2 cut(s)	435, 722
MseI	TTAA	6 cut(s)	315, 423, 459, 660, 1205, 1211
MslI	CAYNNNNRTG	1 cut(s)	568
Msp20I	TGGCCA	2 cut(s)	435, 722
MspA1I	CMGCKG	3 cut(s)	110, 335, 1022
MspI	CCGG	1 cut(s)	1243
MspR9I	CCNGG	4 cut(s)	250, 345, 607, 719
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	4 cut(s)	250, 345, 607, 719
MwoI	GCNNNNNNNGC	3 cut(s)	599, 1019, 1031
NlaIII	CATG	6 cut(s)	517, 573, 629, 755, 772, 1257
NlaIV	GGNNCC	4 cut(s)	732, 733, 749, 1178
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	4 cut(s)	398, 740, 830, 947
NspI	RCATGY	1 cut(s)	1257
PagI	TCATGA	1 cut(s)	625
PceI	AGGCCT	1 cut(s)	1069
PcsI	WCGNNNNNNNCGW	1 cut(s)	1244
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	6 cut(s)	17, 535, 635, 916, 1055, 1131
PinAI	ACCGGT	1 cut(s)	1242
PkrI	GCNGC	7 cut(s)	112, 337, 604, 790, 1024, 1126, 1149
PpuMI	RGGWCCY	3 cut(s)	731, 747, 1176
PshBI	ATTAAT	1 cut(s)	315
Psp5II	RGGWCCY	3 cut(s)	731, 747, 1176
Psp6I	CCWGG	4 cut(s)	248, 343, 605, 717
PspGI	CCWGG	4 cut(s)	248, 343, 605, 717
PspN4I	GGNNCC	4 cut(s)	732, 733, 749, 1178
PspPI	GGNCC	4 cut(s)	554, 731, 747, 1176
PspPPI	RGGWCCY	3 cut(s)	731, 747, 1176
PstNI	CAGNNNCTG	1 cut(s)	794
PvuII	CAGCTG	3 cut(s)	110, 335, 1022
RsaI	GTAC	3 cut(s)	58, 473, 775
RsaNI	GTAC	3 cut(s)	57, 472, 774
RseI	CAYNNNNRTG	1 cut(s)	568
SaqAI	TTAA	6 cut(s)	315, 423, 459, 660, 1205, 1211
SatI	GCNGC	7 cut(s)	111, 336, 603, 789, 1023, 1125, 1148
Sau96I	GGNCC	4 cut(s)	554, 731, 747, 1176
ScrFI	CCNGG	4 cut(s)	250, 345, 607, 719
SfaNI	GCATC	4 cut(s)	74, 673, 1099, 1232
SfcI	CTRYAG	1 cut(s)	807
SinI	GGWCC	3 cut(s)	731, 747, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	568
SmlI	CTYRAG	2 cut(s)	762, 777
SmoI	CTYRAG	2 cut(s)	762, 777
Sse9I	AATT	5 cut(s)	82, 424, 617, 689, 1207
SseBI	AGGCCT	1 cut(s)	1069
SsiI	CCGC	2 cut(s)	686, 728
SspI	AATATT	2 cut(s)	195, 673
StuI	AGGCCT	1 cut(s)	1069
StyD4I	CCNGG	4 cut(s)	248, 343, 605, 717
StyI	CCWWGG	3 cut(s)	176, 394, 723
TaaI	ACNGT	5 cut(s)	11, 269, 1041, 1084, 1196
TaiI	ACGT	2 cut(s)	329, 837
TaqI	TCGA	1 cut(s)	814
TasI	AATT	5 cut(s)	82, 424, 617, 689, 1207
TfiI	GAWTC	6 cut(s)	17, 535, 635, 916, 1055, 1131
Tru1I	TTAA	6 cut(s)	315, 423, 459, 660, 1205, 1211
Tru9I	TTAA	6 cut(s)	315, 423, 459, 660, 1205, 1211
TscAI	CASTG	3 cut(s)	1046, 1101, 1225
TseFI	GTSAC	4 cut(s)	398, 740, 830, 947
TseI	GCWGC	7 cut(s)	110, 335, 602, 788, 1022, 1124, 1147
Tsp45I	GTSAC	4 cut(s)	398, 740, 830, 947
TspRI	CASTG	3 cut(s)	1046, 1101, 1225
VpaK11BI	GGWCC	3 cut(s)	731, 747, 1176
VspI	ATTAAT	1 cut(s)	315
XagI	CCTNNNNNAGG	1 cut(s)	722
XapI	RAATTY	4 cut(s)	82, 617, 689, 1207
XceI	RCATGY	1 cut(s)	1257
XmiI	GTMKAC	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.