Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0007179

Physical Location & Seq

Genomic Coordinates Forward (+)

54235029 .. 54242751

Gene Structure 7723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG388900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGCCCTTAATTACCCACTACTTTTTTCTCCTGTCAGCGTCGGGGACTTCCAAAAATTCCAGCAAAACCAGTCCCTCATCAGCTGCTCCCTCCACCTTGACCATTTCATCATATAGTGAAAAGAGCAATGGTTCAAGTCTTCCTACCCCAAGGACTGAAGGTGAAATATTGTCTTCTCCAAATCTAAACCCGTTCTCATTCACTGAGCTAAGGAATGCCACCAGGAACTTTCGCCCTGACAGTCTTCTCGGCGAGGGAGGATTTGGTTATGTCTTCAAAGGATGGATTAATGAAACCACATTTACAGCTGCAAAGCCAGGGTCAGGAATGGTTGTAGCGGTCAAGAAGCTCAAACCTGAAGGTTTCCAAGGTCACAAGGAGTGGTTGACAGAAGTTAATTATCTTGGCCAACTCTATCATCCAAATCTTGTTAAGCTTATTGGGTACTGCTTGGAAGGTGAAAACCGACTATTGGTGTATGAGTTCATGCCAAAAGGAAGCTTAGAGAATCATCTATTCAGAAGAGGGCCACAACCACTTTCATGGGGAATAAGAATGAAAGTCGCCATAGGTGCTGCCAGGGGGCTAAAATTTCTTCATGAAGCCGAATCACAAGTTATTTATCGTGATTTTAAGGCTTCCAATATTTTACTTGATGCGGAATTCAATGCGAAACTTTCTGATTTTGGCCTGGCCAAGGCGGGTCCCACGGGTGACAGGACCCATGTTTCTACTCAAGTCATGGGTACTCAAGGCTATGCAGCACCTGAATATGTTGCTACAGGTCGATTGACTGCTAAAAGTGACGTTTATAGTTTTGGGGTTGTATTGTTGGAACTATTGTCTGGACGGCGAGCTGTTGATAAAACAAAAGTTGGCGTGGAGCAGAATCTTGTAGACTGGACAAAACCATATTTGGGTGACAAAAGAAAACTATTTCGGATTATGGATACCAAGTTGGAGGGTCAATATCCTCAGAAATCAGCCTATACAGCTGCTACTCTGGCTTTACAGTGCCTAAGCCCAGAATCTAAACAAAGGCCTACAATGTCAACAGTTTTAGCAACACTGGAACAACTTGATGCCCCCAAAACTGCTGCCAGAATCTCTCAATCAGAGCAGCAGGGAGTTCCTCTTCATCACCACAGGTCCCCAATGCGACATCACCGTTCTCCTTTAAATTTAACACCCAGTGCATCTCCATTGCCATCGCACCGGCCGTCTGCATGTGTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030957 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

412

Amino Acids

45.32

Weight (kDa)

9.56

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	80 - 355	6.2e-44	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	81 - 356	9.4e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14370 AT1G26970 AT1G26970 AT1G69790 AT1G69790 AT2G02800 AT2G02800
fragaria_vesca	FvH4_4g31680 FvH4_4g31680 FvH4_4g31680
malus_domestica	MD13G1076100.v1.1 MD16G1076300.v1.1
prunus_persica	Prupe.1G270700_v2.0.a1 Prupe.1G270700_v2.0.a1
pyrus_communis	pycom16g06630
rosa_chinensis	RchiOBHm_Chr4g0440191
rosa_laevigata	RLG00000006197
rosa_multiflora	Rmu_sc0001685.1_g000027
rosa_roxburghii	Rroxscaffold_5G00381120
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375900 Rh4BG388900 Rh4CG403400 Rh4DG382600
rosa_wichuraiana	Rw4G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	897
AciI	CCGC	3 cut(s)	338, 659, 701
AcoI	YGGCCR	3 cut(s)	406, 693, 1217
AcsI	RAATTY	4 cut(s)	55, 590, 662, 1180
AcuI	CTGAAG	2 cut(s)	177, 378
AdeI	CACNNNGTG	1 cut(s)	1193
AfaI	GTAC	2 cut(s)	446, 748
AfiI	CCNNNNNNNGG	4 cut(s)	323, 472, 697, 917
AgsI	TTSAA	3 cut(s)	135, 277, 667
AjnI	CCWGG	4 cut(s)	221, 316, 578, 690
AluBI	AGCT	8 cut(s)	83, 208, 308, 349, 436, 501, 857, 995
AluI	AGCT	8 cut(s)	83, 208, 308, 349, 436, 501, 857, 995
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	6 cut(s)	406, 527, 688, 693, 1040, 1217
ApeKI	GCWGC	7 cut(s)	83, 308, 575, 761, 995, 1097, 1120
ApoI	RAATTY	4 cut(s)	55, 590, 662, 1180
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AseI	ATTAAT	1 cut(s)	288
AspS9I	GGNCC	4 cut(s)	527, 704, 720, 1149
AsuHPI	GGTGA	6 cut(s)	173, 470, 725, 932, 1133, 1157
AvaII	GGWCC	3 cut(s)	704, 720, 1149
BalI	TGGCCA	2 cut(s)	408, 695
BbsI	GAAGAC	4 cut(s)	131, 165, 236, 265
BbvI	GCAGC	7 cut(s)	70, 295, 562, 773, 982, 1084, 1132
BccI	CCATC	2 cut(s)	276, 1216
BceAI	ACGGC	2 cut(s)	866, 1204
BciT130I	CCWGG	4 cut(s)	223, 318, 580, 692
BciVI	GTATCC	1 cut(s)	943
BfmI	CTRYAG	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	943
BisI	GCNGC	7 cut(s)	84, 309, 576, 762, 996, 1098, 1121
BlsI	GCNGC	7 cut(s)	85, 310, 577, 763, 997, 1099, 1122
Bme1390I	CCNGG	4 cut(s)	223, 318, 580, 692
Bme18I	GGWCC	3 cut(s)	704, 720, 1149
BmgT120I	GGNCC	4 cut(s)	527, 704, 720, 1149
BmiI	GGNNCC	4 cut(s)	705, 706, 722, 1151
BmrFI	CCNGG	4 cut(s)	223, 318, 580, 692
BmrI	ACTGGG	1 cut(s)	1185
BmsI	GCATC	3 cut(s)	646, 1072, 1205
BmuI	ACTGGG	1 cut(s)	1185
BpiI	GAAGAC	4 cut(s)	131, 165, 236, 265
Bpu10I	CCTNAGC	2 cut(s)	209, 1019
BpuEI	CTTGAG	2 cut(s)	720, 735
BsaJI	CCNNGG	6 cut(s)	149, 317, 367, 579, 696, 708
Bsc4I	CCNNNNNNNGG	4 cut(s)	323, 472, 697, 917
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	4 cut(s)	69, 905, 1074, 1191
Bse3DI	GCAATG	2 cut(s)	133, 1202
BseBI	CCWGG	4 cut(s)	223, 318, 580, 692
BseDI	CCNNGG	6 cut(s)	149, 317, 367, 579, 696, 708
BseGI	GGATG	2 cut(s)	287, 418
BseLI	CCNNNNNNNGG	4 cut(s)	323, 472, 697, 917
BseMI	GCAATG	2 cut(s)	133, 1202
BseMII	CTCAG	2 cut(s)	195, 989
BseNI	ACTGG	4 cut(s)	69, 905, 1074, 1191
BseX3I	CGGCCG	1 cut(s)	1217
BseXI	GCAGC	7 cut(s)	70, 295, 562, 773, 982, 1084, 1132
Bsh1285I	CGRYCG	1 cut(s)	1220
BshFI	GGCC	6 cut(s)	408, 529, 690, 695, 1042, 1219
BsiEI	CGRYCG	1 cut(s)	1220
BsiSI	CCGG	1 cut(s)	1216
BslFI	GGGAC	4 cut(s)	57, 58, 690, 1135
BslI	CCNNNNNNNGG	4 cut(s)	323, 472, 697, 917
BsmFI	GGGAC	4 cut(s)	57, 58, 690, 1135
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	6 cut(s)	408, 529, 690, 695, 1042, 1219
BspACI	CCGC	3 cut(s)	338, 659, 701
BspANI	GGCC	6 cut(s)	408, 529, 690, 695, 1042, 1219
BspCNI	CTCAG	2 cut(s)	196, 988
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	4 cut(s)	705, 706, 722, 1151
BsrDI	GCAATG	2 cut(s)	133, 1202
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	4 cut(s)	69, 905, 1074, 1191
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	6 cut(s)	149, 317, 367, 579, 696, 708
BssT1I	CCWWGG	3 cut(s)	149, 367, 696
Bst2UI	CCWGG	4 cut(s)	223, 318, 580, 692
Bst4CI	ACNGT	4 cut(s)	242, 1014, 1057, 1169
Bst6I	CTCTTC	2 cut(s)	517, 1140
BstC8I	GCNNGC	1 cut(s)	855
BstDEI	CTNAG	5 cut(s)	204, 209, 502, 975, 1019
BstDSI	CCRYGG	1 cut(s)	708
BstENI	CCTNNNNNAGG	1 cut(s)	695
BstF5I	GGATG	2 cut(s)	287, 418
BstMCI	CGRYCG	1 cut(s)	1220
BstMWI	GCNNNNNNNGC	3 cut(s)	572, 992, 1004
BstNI	CCWGG	4 cut(s)	223, 318, 580, 692
BstNSI	RCATGY	1 cut(s)	1230
BstSCI	CCNGG	4 cut(s)	221, 316, 578, 690
BstSFI	CTRYAG	1 cut(s)	780
BstV1I	GCAGC	7 cut(s)	70, 295, 562, 773, 982, 1084, 1132
BstV2I	GAAGAC	4 cut(s)	131, 165, 236, 265
BstXI	CCANNNNNNTGG	1 cut(s)	543
BstZI	CGGCCG	1 cut(s)	1217
BsuI	GTATCC	1 cut(s)	943
BsuRI	GGCC	6 cut(s)	408, 529, 690, 695, 1042, 1219
BtgI	CCRYGG	1 cut(s)	708
BtgZI	GCGATG	1 cut(s)	1194
BtsCI	GGATG	2 cut(s)	287, 418
BtsIMutI	CAGTG	4 cut(s)	201, 1019, 1067, 1198
Cac8I	GCNNGC	1 cut(s)	855
CaiI	CAGNNNCTG	1 cut(s)	767
CciI	TCATGA	1 cut(s)	598
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	4 cut(s)	527, 704, 720, 1149
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	445, 747
CviAII	CATG	6 cut(s)	487, 543, 599, 725, 742, 1227
CviQI	GTAC	2 cut(s)	445, 747
DdeI	CTNAG	5 cut(s)	204, 209, 502, 975, 1019
DraI	TTTAAA	1 cut(s)	1179
DraIII	CACNNNGTG	1 cut(s)	1193
EaeI	YGGCCR	3 cut(s)	406, 693, 1217
EagI	CGGCCG	1 cut(s)	1217
Eam1104I	CTCTTC	2 cut(s)	517, 1140
EarI	CTCTTC	2 cut(s)	517, 1140
EclXI	CGGCCG	1 cut(s)	1217
Eco130I	CCWWGG	3 cut(s)	149, 367, 696
Eco147I	AGGCCT	1 cut(s)	1042
Eco47I	GGWCC	3 cut(s)	704, 720, 1149
Eco52I	CGGCCG	1 cut(s)	1217
Eco57I	CTGAAG	2 cut(s)	177, 378
EcoNI	CCTNNNNNAGG	1 cut(s)	695
EcoO109I	RGGNCCY	3 cut(s)	704, 720, 1149
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	4 cut(s)	221, 316, 578, 690
EcoT14I	CCWWGG	3 cut(s)	149, 367, 696
ErhI	CCWWGG	3 cut(s)	149, 367, 696
FaeI	CATG	6 cut(s)	490, 546, 602, 728, 745, 1230
FaqI	GGGAC	4 cut(s)	57, 58, 690, 1135
FatI	CATG	6 cut(s)	486, 542, 598, 724, 741, 1226
FauI	CCCGC	1 cut(s)	694
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	7 cut(s)	84, 309, 576, 762, 996, 1098, 1121
FokI	GGATG	2 cut(s)	294, 405
Fsp4HI	GCNGC	7 cut(s)	84, 309, 576, 762, 996, 1098, 1121
GluI	GCNGC	7 cut(s)	84, 309, 576, 762, 996, 1098, 1121
HaeIII	GGCC	6 cut(s)	408, 529, 690, 695, 1042, 1219
HapII	CCGG	1 cut(s)	1216
HgaI	GACGC	1 cut(s)	27
Hin1II	CATG	6 cut(s)	490, 546, 602, 728, 745, 1230
HincII	GTYRAC	2 cut(s)	387, 1053
HindII	GTYRAC	2 cut(s)	387, 1053
HindIII	AAGCTT	2 cut(s)	434, 499
HinfI	GANTC	5 cut(s)	508, 608, 889, 1028, 1104
HpaII	CCGG	1 cut(s)	1216
HphI	GGTGA	6 cut(s)	173, 470, 725, 932, 1133, 1157
Hpy166II	GTNNAC	3 cut(s)	387, 898, 1053
Hpy188I	TCNGA	5 cut(s)	521, 682, 942, 978, 1117
Hpy188III	TCNNGA	5 cut(s)	324, 343, 599, 626, 846
Hpy8I	GTNNAC	3 cut(s)	387, 898, 1053
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	152, 353, 449
HpyCH4III	ACNGT	4 cut(s)	242, 1014, 1057, 1169
HpyCH4IV	ACGT	1 cut(s)	807
HpyCH4V	TGCA	4 cut(s)	311, 761, 1196, 1226
HpyF10VI	GCNNNNNNNGC	3 cut(s)	572, 992, 1004
HpyF3I	CTNAG	5 cut(s)	204, 209, 502, 975, 1019
HpySE526I	ACGT	1 cut(s)	807
Hsp92II	CATG	6 cut(s)	490, 546, 602, 728, 745, 1230
KflI	GGGWCCC	1 cut(s)	704
LmnI	GCTCC	2 cut(s)	91, 883
Lsp1109I	GCAGC	7 cut(s)	70, 295, 562, 773, 982, 1084, 1132
LweI	GCATC	3 cut(s)	646, 1072, 1205
MaeII	ACGT	1 cut(s)	807
MaeIII	GTNAC	4 cut(s)	371, 713, 803, 920
MboII	GAAGA	7 cut(s)	131, 165, 236, 265, 534, 587, 1127
MlsI	TGGCCA	2 cut(s)	408, 695
MluCI	AATT	6 cut(s)	9, 55, 397, 590, 662, 1180
MluNI	TGGCCA	2 cut(s)	408, 695
MmeI	TCCRAC	2 cut(s)	813, 939
MnlI	CCTC	8 cut(s)	85, 100, 247, 251, 518, 955, 984, 1143
Mox20I	TGGCCA	2 cut(s)	408, 695
MscI	TGGCCA	2 cut(s)	408, 695
MseI	TTAA	7 cut(s)	8, 288, 396, 432, 633, 1178, 1184
MslI	CAYNNNNRTG	1 cut(s)	541
Msp20I	TGGCCA	2 cut(s)	408, 695
MspA1I	CMGCKG	3 cut(s)	83, 308, 995
MspI	CCGG	1 cut(s)	1216
MspR9I	CCNGG	4 cut(s)	223, 318, 580, 692
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	4 cut(s)	223, 318, 580, 692
MwoI	GCNNNNNNNGC	3 cut(s)	572, 992, 1004
NlaIII	CATG	6 cut(s)	490, 546, 602, 728, 745, 1230
NlaIV	GGNNCC	4 cut(s)	705, 706, 722, 1151
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	4 cut(s)	371, 713, 803, 920
NspI	RCATGY	1 cut(s)	1230
PagI	TCATGA	1 cut(s)	598
PceI	AGGCCT	1 cut(s)	1042
PcsI	WCGNNNNNNNCGW	1 cut(s)	1217
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	5 cut(s)	508, 608, 889, 1028, 1104
PkrI	GCNGC	7 cut(s)	85, 310, 577, 763, 997, 1099, 1122
PpuMI	RGGWCCY	3 cut(s)	704, 720, 1149
PshBI	ATTAAT	1 cut(s)	288
Psp5II	RGGWCCY	3 cut(s)	704, 720, 1149
Psp6I	CCWGG	4 cut(s)	221, 316, 578, 690
PspGI	CCWGG	4 cut(s)	221, 316, 578, 690
PspN4I	GGNNCC	4 cut(s)	705, 706, 722, 1151
PspPI	GGNCC	4 cut(s)	527, 704, 720, 1149
PspPPI	RGGWCCY	3 cut(s)	704, 720, 1149
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	3 cut(s)	83, 308, 995
RsaI	GTAC	2 cut(s)	446, 748
RsaNI	GTAC	2 cut(s)	445, 747
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	7 cut(s)	8, 288, 396, 432, 633, 1178, 1184
SatI	GCNGC	7 cut(s)	84, 309, 576, 762, 996, 1098, 1121
Sau96I	GGNCC	4 cut(s)	527, 704, 720, 1149
ScrFI	CCNGG	4 cut(s)	223, 318, 580, 692
SfaNI	GCATC	3 cut(s)	646, 1072, 1205
SfcI	CTRYAG	1 cut(s)	780
SinI	GGWCC	3 cut(s)	704, 720, 1149
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	2 cut(s)	735, 750
SmoI	CTYRAG	2 cut(s)	735, 750
Sse9I	AATT	6 cut(s)	9, 55, 397, 590, 662, 1180
SseBI	AGGCCT	1 cut(s)	1042
SsiI	CCGC	3 cut(s)	338, 659, 701
SspI	AATATT	2 cut(s)	168, 646
StuI	AGGCCT	1 cut(s)	1042
StyD4I	CCNGG	4 cut(s)	221, 316, 578, 690
StyI	CCWWGG	3 cut(s)	149, 367, 696
TaaI	ACNGT	4 cut(s)	242, 1014, 1057, 1169
TaiI	ACGT	1 cut(s)	810
TaqI	TCGA	1 cut(s)	787
TasI	AATT	6 cut(s)	9, 55, 397, 590, 662, 1180
TfiI	GAWTC	5 cut(s)	508, 608, 889, 1028, 1104
Tru1I	TTAA	7 cut(s)	8, 288, 396, 432, 633, 1178, 1184
Tru9I	TTAA	7 cut(s)	8, 288, 396, 432, 633, 1178, 1184
TscAI	CASTG	4 cut(s)	208, 1019, 1074, 1198
TseFI	GTSAC	4 cut(s)	371, 713, 803, 920
TseI	GCWGC	7 cut(s)	83, 308, 575, 761, 995, 1097, 1120
Tsp45I	GTSAC	4 cut(s)	371, 713, 803, 920
TspDTI	ATGAA	9 cut(s)	96, 306, 475, 531, 572, 587, 615, 1127, 1223
TspRI	CASTG	4 cut(s)	208, 1019, 1074, 1198
VpaK11BI	GGWCC	3 cut(s)	704, 720, 1149
VspI	ATTAAT	1 cut(s)	288
XagI	CCTNNNNNAGG	1 cut(s)	695
XapI	RAATTY	4 cut(s)	55, 590, 662, 1180
XceI	RCATGY	1 cut(s)	1230
XmiI	GTMKAC	1 cut(s)	897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.