Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007179

Physical Location & Seq

Genomic Coordinates Forward (+)

4293839 .. 4295497

Gene Structure 1659 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCCGAAAGGAAGCTTAGAGAATCATCTGTTTAGAAGAGGGCCGCAACCACTTTCATGGGCAACAAGAATGAAAGTAGCCATAGGTGCTGCAAGGGGGCTTAGTTTTCTTCACGAGGCGGAATCACAAGTCATATATCGTGATTTTAAGGCTTCCAATATTTTACTAGATTCGGAATTCAATGCGAAGCTTTCTGATTTTGGCTTGGCCAAGGCTGGTCCCACTGGCGACAGGACTCATGTGTCTACTCAAGTCATGGGTACTCATGGCTATGCAGCACCCGAATATGTTGCTACAGGTAGATTGACCGCTAAAAGTGACGTCTATAGTTTTGGGGTTGTACTGCTGGAACTATTGTCTGGAAGGCGAGCTGTTGATAAAACGAAAGTTGGTGTGGAGCAGAATCTGGTAGACTGGACAAAACCATATTTAGGTGACAGAAGAAAACTATTTCGGATTATGGACACCAAGCTGGAGGGCCAATATCCCCAGAAAGCAGCTTATACAGCTGCTACTCTTGCTTCACAATGCCTATGCGTTGAATCTAAACTCAGGCCTACAATGTCAGTGGTATTAGCCACGCTGGAACAACTTGAATCCCCAAAGACTGCAGCCAGAAATTCTCAATCAGAACAGCAGACACTTCCTGTTCCTCAGAAGTCGCCAATGCGACAACACCATTCTCCTCTCAATATGCCACCAAATGCATCCCCATTGGCATCCCAAAGGCAATCTGTACGTGTTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0030957 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

250

Amino Acids

27.49

Weight (kDa)

9.85

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007179)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14370 AT1G26970 AT1G26970 AT1G69790 AT1G69790 AT2G02800 AT2G02800
fragaria_vesca	FvH4_4g31680 FvH4_4g31680 FvH4_4g31680
malus_domestica	MD13G1076100.v1.1 MD16G1076300.v1.1
prunus_persica	Prupe.1G270700_v2.0.a1 Prupe.1G270700_v2.0.a1
pyrus_communis	pycom16g06630
rosa_chinensis	RchiOBHm_Chr4g0440191
rosa_laevigata	RLG00000006197
rosa_multiflora	Rmu_sc0001685.1_g000027
rosa_roxburghii	Rroxscaffold_5G00381120
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375900 Rh4BG388900 Rh4CG403400 Rh4DG382600
rosa_wichuraiana	Rw4G032170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	241
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	2 cut(s)	245, 411
AciI	CCGC	3 cut(s)	44, 119, 309
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	2 cut(s)	176, 619
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	3 cut(s)	262, 342, 738
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	739
AgsI	TTSAA	3 cut(s)	181, 542, 596
AluBI	AGCT	6 cut(s)	15, 190, 371, 472, 500, 509
AluI	AGCT	6 cut(s)	15, 190, 371, 472, 500, 509
AlwNI	CAGNNNCTG	1 cut(s)	406
AoxI	GGCC	4 cut(s)	41, 207, 478, 554
ApeKI	GCWGC	5 cut(s)	89, 275, 497, 509, 611
ApoI	RAATTY	2 cut(s)	176, 619
AspS9I	GGNCC	3 cut(s)	41, 218, 478
AsuHPI	GGTGA	1 cut(s)	446
AvaII	GGWCC	1 cut(s)	218
BalI	TGGCCA	1 cut(s)	209
BauI	CACGAG	1 cut(s)	113
BbvI	GCAGC	5 cut(s)	76, 287, 496, 509, 623
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	3 cut(s)	294, 325, 609
BisI	GCNGC	6 cut(s)	44, 90, 276, 498, 510, 612
BlsI	GCNGC	6 cut(s)	45, 91, 277, 499, 511, 613
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	3 cut(s)	41, 218, 478
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	2 cut(s)	716, 728
BpmI	CTGGAG	1 cut(s)	494
BpuEI	CTTGAG	1 cut(s)	234
BsaAI	YACGTR	1 cut(s)	740
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	229, 419
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	707, 719
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	2 cut(s)	565, 668
BseNI	ACTGG	2 cut(s)	229, 419
BseRI	GAGGAG	1 cut(s)	675
BseXI	GCAGC	5 cut(s)	76, 287, 496, 509, 623
BshFI	GGCC	4 cut(s)	43, 209, 480, 556
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	43, 209, 480, 556
BspACI	CCGC	3 cut(s)	44, 119, 309
BspANI	GGCC	4 cut(s)	43, 209, 480, 556
BspCNI	CTCAG	2 cut(s)	564, 667
BspLI	GGNNCC	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	613
BsrI	ACTGG	2 cut(s)	229, 419
BssECI	CCNNGG	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	113
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	31
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	1 cut(s)	740
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	4 cut(s)	16, 101, 551, 654
BstF5I	GGATG	2 cut(s)	707, 719
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 506, 518
BstSFI	CTRYAG	3 cut(s)	294, 325, 609
BstV1I	GCAGC	5 cut(s)	76, 287, 496, 509, 623
BstXI	CCANNNNNNTGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	43, 209, 480, 556
BtsCI	GGATG	2 cut(s)	707, 719
BtsIMutI	CAGTG	2 cut(s)	222, 573
Cac8I	GCNNGC	1 cut(s)	369
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	41, 218, 478
Csp6I	GTAC	3 cut(s)	261, 341, 737
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	4 cut(s)	57, 239, 256, 266
CviQI	GTAC	3 cut(s)	261, 341, 737
DdeI	CTNAG	4 cut(s)	16, 101, 551, 654
DrdI	GACNNNNNNGTC	1 cut(s)	241
DseDI	GACNNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	210
Eco147I	AGGCCT	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	60, 242, 259, 269
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	4 cut(s)	56, 238, 255, 265
FblI	GTMKAC	2 cut(s)	245, 411
Fnu4HI	GCNGC	6 cut(s)	44, 90, 276, 498, 510, 612
FokI	GGATG	2 cut(s)	694, 706
Fsp4HI	GCNGC	6 cut(s)	44, 90, 276, 498, 510, 612
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	6 cut(s)	44, 90, 276, 498, 510, 612
GsuI	CTGGAG	1 cut(s)	494
HaeIII	GGCC	4 cut(s)	43, 209, 480, 556
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	4 cut(s)	60, 242, 259, 269
HindIII	AAGCTT	2 cut(s)	13, 188
HinfI	GANTC	7 cut(s)	22, 122, 170, 235, 403, 542, 596
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	2 cut(s)	246, 412
Hpy188I	TCNGA	5 cut(s)	175, 196, 456, 631, 657
Hpy188III	TCNNGA	3 cut(s)	113, 140, 360
Hpy8I	GTNNAC	2 cut(s)	246, 412
HpyAV	CCTTC	1 cut(s)	357
HpyCH4IV	ACGT	2 cut(s)	321, 739
HpyCH4V	TGCA	4 cut(s)	92, 275, 611, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 506, 518
HpyF3I	CTNAG	4 cut(s)	16, 101, 551, 654
HpySE526I	ACGT	2 cut(s)	321, 739
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	4 cut(s)	60, 242, 259, 269
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	5 cut(s)	76, 287, 496, 509, 623
LweI	GCATC	2 cut(s)	716, 728
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	321, 739
MaeIII	GTNAC	2 cut(s)	317, 434
MboII	GAAGA	3 cut(s)	48, 101, 453
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	2 cut(s)	176, 619
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	32, 109, 469, 663, 696
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	709
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	2 cut(s)	147, 748
MslI	CAYNNNNRTG	2 cut(s)	55, 270
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	509
MwoI	GCNNNNNNNGC	3 cut(s)	86, 506, 518
NlaIII	CATG	4 cut(s)	60, 242, 259, 269
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	317, 434
NsiI	ATGCAT	1 cut(s)	709
PceI	AGGCCT	1 cut(s)	556
PfeI	GAWTC	6 cut(s)	22, 122, 170, 403, 542, 596
PkrI	GCNGC	6 cut(s)	45, 91, 277, 499, 511, 613
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	740
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	3 cut(s)	41, 218, 478
PstI	CTGCAG	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	509
RsaI	GTAC	3 cut(s)	262, 342, 738
RsaNI	GTAC	3 cut(s)	261, 341, 737
RseI	CAYNNNNRTG	2 cut(s)	55, 270
SaqAI	TTAA	2 cut(s)	147, 748
SatI	GCNGC	6 cut(s)	44, 90, 276, 498, 510, 612
Sau96I	GGNCC	3 cut(s)	41, 218, 478
SchI	GAGTC	1 cut(s)	229
SfaNI	GCATC	2 cut(s)	716, 728
SfcI	CTRYAG	3 cut(s)	294, 325, 609
SinI	GGWCC	1 cut(s)	218
SmiMI	CAYNNNNRTG	2 cut(s)	55, 270
SmlI	CTYRAG	1 cut(s)	249
SmoI	CTYRAG	1 cut(s)	249
Sse9I	AATT	2 cut(s)	176, 619
SseBI	AGGCCT	1 cut(s)	556
SsiI	CCGC	3 cut(s)	44, 119, 309
SspI	AATATT	1 cut(s)	160
SspMI	CTAG	1 cut(s)	167
StuI	AGGCCT	1 cut(s)	556
StyI	CCWWGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	324, 742
TasI	AATT	2 cut(s)	176, 619
TatI	WGTACW	1 cut(s)	340
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	6 cut(s)	22, 122, 170, 403, 542, 596
Tru1I	TTAA	2 cut(s)	147, 748
Tru9I	TTAA	2 cut(s)	147, 748
TscAI	CASTG	2 cut(s)	229, 573
TseFI	GTSAC	2 cut(s)	317, 434
TseI	GCWGC	5 cut(s)	89, 275, 497, 509, 611
Tsp45I	GTSAC	2 cut(s)	317, 434
TspDTI	ATGAA	2 cut(s)	45, 86
TspRI	CASTG	2 cut(s)	229, 573
VpaK11BI	GGWCC	1 cut(s)	218
XapI	RAATTY	2 cut(s)	176, 619
XmiI	GTMKAC	2 cut(s)	245, 411
XspI	CTAG	1 cut(s)	167
ZraI	GACGTC	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.