MD16G1076300.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
5368653 .. 5372676
4024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1076300.v1.1.491

Sequence Viewer

Length: 1260 bp
ATGGGCAACTGTTTAGATTCTTCTGCTAAAGTCGACACCGCACAGAGCTCCCTTGGAACTTGGGGATCAGGGGCTTCCAAAGTTTCCAACAAAACTAGCCCTTCCTCAGCTCCCTCCACTTTGACCGTCCCGTCATATAATGGAAGGAGCAGTGGTTCAAGTCTTCCTACCCCAAGGACTGAAGGAGAAATATTGTCATCTCCAAATTTGAAAGCCTTCTCATTCAATGAGCTAAAGAATGCCACCCGAAACTTCCGCCCTGACAGTCTTCTCGGTGAAGGAGGATTTGGTTATGTTTTCAAAGGATGGATTAATGAGAACACGTGGACAGCTGCAAAACCAGGGTCCGGAATGGTTGTTGCTGTCAAGAAGCTCAAACCTGAGGGTTTCCAAGGCCACAAGGAGTGGTTGACAGAAGTAAATTATCTTGGTCAACTCCATCATCCAAATCTGGTTAAGCTTATCGGGTACTGCTTGGAGGGTGAGAACCGCCTTTTGGTGTATGAGTTCATGCCGAAAGGAAGCTTAGAGAATCATCTGTTTAGAAGAGGGCCGCAACCACTTTCATGGGCAACAAGAATGAAAGTAGCCATAGGCGCTGCAAGGGGGCTCAGTTTTCTTCACGAGGCGGAATCACAAGTCATATATCGTGATTTTAAGGCTTCCAATATTTTACTAGATTCGGAATTCAACGCGAAGCTTTCTGATTTTGGCTTGGCCAAGGCTGGTCCCACTGGTGACAGGACTCATGTGTCTACTCAAGTCATGGGTACTCAAGGCTATGCTGCACCCGAATATGTAGCTACAGGTAGGTTGACTGCTAAAAGTGATGTCTATAGTTTTGGGGTTGTACTGCTGGAACTATTGTCTGGAAGGCGAGCTGTTGATAAAACAAAAGTTGGTGTGGAGCAGAATCTGGTAGATTGGACGAAACCATATTTGGGTGATAAAAGAAAACTATTTCGGATTATGGATACCAAGTTGGAGGGCCAATATCCCCAGAAAGCAGCTTATACAGCTGCTACTCTTGCTTCACAATGCCTATGCACCGAATCTAAACTCAGGCCTACAATGTCAGTGGTATTAGCCACGCTGGAACAACTTGAATCCCCAAAGACTGCAGCCAGAAACTCTCAATCAGAACAGCACACACTTCCTGTTCCTCGGAAGTCGCCAATGCGACAACACCATTCTCCTCTCAATATGCCACCAAATGCATCCCCATTGGCATCCCAAAGGCAATCTGTACGTGTTCGTTAA

Protein Analysis

420

Amino Acids

45.81

Weight (kDa)

9.62

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 88 - 362 7.8e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 89 - 363 5.3e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 130, 751
AccI GTMKAC 2 cut(s) 33, 755
AccII CGCG 1 cut(s) 695
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 5 cut(s) 39, 256, 490, 554, 629
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 717
AcsI RAATTY 2 cut(s) 205, 686
AcuI CTGAAG 1 cut(s) 201
AcvI CACGTG 1 cut(s) 324
AfaI GTAC 4 cut(s) 470, 772, 852, 1248
AfiI CCNNNNNNNGG 3 cut(s) 347, 496, 941
AflIII ACRYGT 2 cut(s) 321, 1249
AgsI TTSAA 6 cut(s) 159, 211, 226, 301, 691, 1106
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 6 cut(s) 270, 302, 479, 511, 923, 955
AloI GAACNNNNNNTCC 2 cut(s) 139, 171
Alw21I GWGCWC 1 cut(s) 50
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 916
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 5 cut(s) 394, 551, 717, 988, 1064
ApeKI GCWGC 6 cut(s) 332, 599, 785, 1007, 1019, 1121
ApoI RAATTY 2 cut(s) 205, 686
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
AseI ATTAAT 1 cut(s) 312
Asp700I GAANNNNTTC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 599
AspS9I GGNCC 4 cut(s) 345, 551, 728, 988
AsuHPI GGTGA 4 cut(s) 287, 494, 749, 956
AvaII GGWCC 2 cut(s) 345, 728
AxyI CCTNAGG 1 cut(s) 381
BalI TGGCCA 1 cut(s) 719
BanII GRGCYC 2 cut(s) 50, 612
BauI CACGAG 1 cut(s) 623
BbrPI CACGTG 1 cut(s) 324
BbsI GAAGAC 2 cut(s) 155, 260
Bbv12I GWGCWC 1 cut(s) 50
BbvCI CCTCAGC 1 cut(s) 106
BbvI GCAGC 6 cut(s) 319, 586, 772, 1006, 1019, 1133
BccI CCATC 2 cut(s) 300, 447
BciT130I CCWGG 1 cut(s) 342
BciVI GTATCC 1 cut(s) 967
BfaI CTAG 2 cut(s) 96, 677
BfmI CTRYAG 3 cut(s) 804, 835, 1119
BfoI RGCGCY 1 cut(s) 600
BfuI GTATCC 1 cut(s) 967
BisI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
BlsI GCNGC 7 cut(s) 334, 555, 601, 787, 1009, 1021, 1123
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 2 cut(s) 345, 728
BmgT120I GGNCC 4 cut(s) 345, 551, 728, 988
BmiI GGNNCC 2 cut(s) 346, 730
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 2 cut(s) 1226, 1238
BpiI GAAGAC 2 cut(s) 155, 260
Bpu10I CCTNAGC 1 cut(s) 106
BpuEI CTTGAG 2 cut(s) 744, 759
BsaAI YACGTR 2 cut(s) 324, 1250
BsaJI CCNNGG 6 cut(s) 52, 173, 341, 391, 720, 1163
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 347, 496, 941
Bse1I ACTGG 1 cut(s) 739
Bse21I CCTNAGG 1 cut(s) 381
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 6 cut(s) 52, 173, 341, 391, 720, 1163
BseGI GGATG 4 cut(s) 311, 442, 1217, 1229
BseLI CCNNNNNNNGG 3 cut(s) 347, 496, 941
BseMII CTCAG 4 cut(s) 120, 372, 625, 1075
BseNI ACTGG 1 cut(s) 739
BseRI GAGGAG 1 cut(s) 1185
BseXI GCAGC 6 cut(s) 319, 586, 772, 1006, 1019, 1133
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 695
BshFI GGCC 5 cut(s) 396, 553, 719, 990, 1066
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 348
BslFI GGGAC 2 cut(s) 113, 714
BslI CCNNNNNNNGG 3 cut(s) 347, 496, 941
BsmFI GGGAC 2 cut(s) 113, 714
BsmI GAATGC 1 cut(s) 244
BsnI GGCC 5 cut(s) 396, 553, 719, 990, 1066
Bsp1286I GDGCHC 2 cut(s) 50, 612
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 1 cut(s) 65
BspACI CCGC 5 cut(s) 39, 256, 490, 554, 629
BspANI GGCC 5 cut(s) 396, 553, 719, 990, 1066
BspCNI CTCAG 4 cut(s) 119, 373, 624, 1074
BspEI TCCGGA 1 cut(s) 347
BspFNI CGCG 1 cut(s) 695
BspLI GGNNCC 2 cut(s) 346, 730
BspMAI CTGCAG 1 cut(s) 1123
BspPI GGATC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 739
BssECI CCNNGG 6 cut(s) 52, 173, 341, 391, 720, 1163
BssMI GATC 1 cut(s) 65
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 4 cut(s) 52, 173, 391, 720
Bst2BI CACGAG 1 cut(s) 623
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 3 cut(s) 11, 127, 266
Bst6I CTCTTC 1 cut(s) 541
BstBAI YACGTR 2 cut(s) 324, 1250
BstC8I GCNNGC 1 cut(s) 879
BstDEI CTNAG 5 cut(s) 106, 381, 526, 611, 1061
BstF5I GGATG 4 cut(s) 311, 442, 1217, 1229
BstFNI CGCG 1 cut(s) 695
BstH2I RGCGCY 1 cut(s) 600
BstHHI GCGC 1 cut(s) 599
BstKTI GATC 1 cut(s) 68
BstMBI GATC 1 cut(s) 65
BstMWI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 3 cut(s) 804, 835, 1119
BstUI CGCG 1 cut(s) 695
BstV1I GCAGC 6 cut(s) 319, 586, 772, 1006, 1019, 1133
BstV2I GAAGAC 2 cut(s) 155, 260
BstXI CCANNNNNNTGG 1 cut(s) 567
Bsu36I CCTNAGG 1 cut(s) 381
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 5 cut(s) 396, 553, 719, 990, 1066
BtsCI GGATG 4 cut(s) 311, 442, 1217, 1229
BtsI GCAGTG 1 cut(s) 157
BtsIMutI CAGTG 3 cut(s) 157, 732, 1083
Cac8I GCNNGC 1 cut(s) 879
CaiI CAGNNNCTG 1 cut(s) 916
CfoI GCGC 1 cut(s) 599
Cfr13I GGNCC 4 cut(s) 345, 551, 728, 988
Csp6I GTAC 4 cut(s) 469, 771, 851, 1247
CspCI CAANNNNNGTGG 2 cut(s) 1059, 1094
CviAII CATG 4 cut(s) 511, 567, 749, 766
CviQI GTAC 4 cut(s) 469, 771, 851, 1247
DdeI CTNAG 5 cut(s) 106, 381, 526, 611, 1061
DpnI GATC 1 cut(s) 67
DpnII GATC 1 cut(s) 65
DrdI GACNNNNNNGTC 2 cut(s) 130, 751
DseDI GACNNNNNNGTC 2 cut(s) 130, 751
EaeI YGGCCR 1 cut(s) 717
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 2 cut(s) 245, 644
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 4 cut(s) 52, 173, 391, 720
Eco147I AGGCCT 1 cut(s) 1066
Eco24I GRGCYC 2 cut(s) 50, 612
Eco47I GGWCC 2 cut(s) 345, 728
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 201
Eco72I CACGTG 1 cut(s) 324
Eco81I CCTNAGG 1 cut(s) 381
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 4 cut(s) 52, 173, 391, 720
EcoT22I ATGCAT 1 cut(s) 1219
EcoT38I GRGCYC 2 cut(s) 50, 612
ErhI CCWWGG 4 cut(s) 52, 173, 391, 720
FaeI CATG 4 cut(s) 514, 570, 752, 769
FaqI GGGAC 2 cut(s) 113, 714
FatI CATG 4 cut(s) 510, 566, 748, 765
FblI GTMKAC 2 cut(s) 33, 755
Fnu4HI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
FokI GGATG 4 cut(s) 318, 429, 1204, 1216
FriOI GRGCYC 2 cut(s) 50, 612
Fsp4HI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
FspBI CTAG 2 cut(s) 96, 677
GlaI GCGC 1 cut(s) 598
GluI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
HaeII RGCGCY 1 cut(s) 600
HaeIII GGCC 5 cut(s) 396, 553, 719, 990, 1066
HapII CCGG 1 cut(s) 348
HhaI GCGC 1 cut(s) 599
Hin1II CATG 4 cut(s) 514, 570, 752, 769
Hin6I GCGC 1 cut(s) 597
HinP1I GCGC 1 cut(s) 597
HincII GTYRAC 4 cut(s) 34, 411, 434, 816
HindII GTYRAC 4 cut(s) 34, 411, 434, 816
HindIII AAGCTT 3 cut(s) 458, 523, 698
HinfI GANTC 8 cut(s) 17, 532, 632, 680, 745, 913, 1052, 1106
HpaII CCGG 1 cut(s) 348
HphI GGTGA 4 cut(s) 287, 494, 749, 956
Hpy166II GTNNAC 6 cut(s) 34, 327, 411, 434, 756, 816
Hpy188I TCNGA 5 cut(s) 685, 706, 966, 1141, 1167
Hpy188III TCNNGA 5 cut(s) 348, 367, 623, 650, 870
Hpy8I GTNNAC 6 cut(s) 34, 327, 411, 434, 756, 816
HpyAV CCTTC 6 cut(s) 111, 138, 176, 226, 272, 867
HpyCH4III ACNGT 3 cut(s) 11, 127, 266
HpyCH4IV ACGT 2 cut(s) 323, 1249
HpyCH4V TGCA 6 cut(s) 335, 602, 788, 1047, 1121, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
HpyF3I CTNAG 5 cut(s) 106, 381, 526, 611, 1061
HpySE526I ACGT 2 cut(s) 323, 1249
Hsp92II CATG 4 cut(s) 514, 570, 752, 769
HspAI GCGC 1 cut(s) 597
Kpn2I TCCGGA 1 cut(s) 347
Kzo9I GATC 1 cut(s) 65
LmnI GCTCC 4 cut(s) 53, 115, 147, 907
Lsp1109I GCAGC 6 cut(s) 319, 586, 772, 1006, 1019, 1133
LweI GCATC 2 cut(s) 1226, 1238
MaeI CTAG 2 cut(s) 96, 677
MaeII ACGT 2 cut(s) 323, 1249
MaeIII GTNAC 1 cut(s) 737
MalI GATC 1 cut(s) 67
MboI GATC 1 cut(s) 65
MboII GAAGA 5 cut(s) 12, 155, 260, 558, 611
MhlI GDGCHC 2 cut(s) 50, 612
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 3 cut(s) 205, 421, 686
MluNI TGGCCA 1 cut(s) 719
MlyI GAGTC 1 cut(s) 739
MmeI TCCRAC 2 cut(s) 111, 963
Mox20I TGGCCA 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 1219
MroI TCCGGA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 215
MscI TGGCCA 1 cut(s) 719
MseI TTAA 4 cut(s) 312, 456, 657, 1258
MslI CAYNNNNRTG 1 cut(s) 565
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 2 cut(s) 332, 1019
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 244
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 695
MwoI GCNNNNNNNGC 3 cut(s) 596, 1016, 1028
NdeII GATC 1 cut(s) 65
NlaIII CATG 4 cut(s) 514, 570, 752, 769
NlaIV GGNNCC 2 cut(s) 346, 730
NmuCI GTSAC 1 cut(s) 737
NsiI ATGCAT 1 cut(s) 1219
PceI AGGCCT 1 cut(s) 1066
PctI GAATGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 7 cut(s) 17, 532, 632, 680, 913, 1052, 1106
PkrI GCNGC 7 cut(s) 334, 555, 601, 787, 1009, 1021, 1123
PleI GAGTC 1 cut(s) 739
PmaCI CACGTG 1 cut(s) 324
PmlI CACGTG 1 cut(s) 324
PpsI GAGTC 1 cut(s) 739
Ppu21I YACGTR 2 cut(s) 324, 1250
PshBI ATTAAT 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 340
PspCI CACGTG 1 cut(s) 324
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 2 cut(s) 346, 730
PspPI GGNCC 4 cut(s) 345, 551, 728, 988
PstI CTGCAG 1 cut(s) 1123
PstNI CAGNNNCTG 1 cut(s) 916
PvuII CAGCTG 2 cut(s) 332, 1019
RsaI GTAC 4 cut(s) 470, 772, 852, 1248
RsaNI GTAC 4 cut(s) 469, 771, 851, 1247
RseI CAYNNNNRTG 1 cut(s) 565
SacI GAGCTC 1 cut(s) 50
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 4 cut(s) 312, 456, 657, 1258
SatI GCNGC 7 cut(s) 333, 554, 600, 786, 1008, 1020, 1122
Sau3AI GATC 1 cut(s) 65
Sau96I GGNCC 4 cut(s) 345, 551, 728, 988
SchI GAGTC 1 cut(s) 739
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 2 cut(s) 50, 612
SfaNI GCATC 2 cut(s) 1226, 1238
SfcI CTRYAG 3 cut(s) 804, 835, 1119
SinI GGWCC 2 cut(s) 345, 728
SmiMI CAYNNNNRTG 1 cut(s) 565
SmlI CTYRAG 2 cut(s) 759, 774
SmoI CTYRAG 2 cut(s) 759, 774
Sse9I AATT 3 cut(s) 205, 421, 686
SseBI AGGCCT 1 cut(s) 1066
SsiI CCGC 5 cut(s) 39, 256, 490, 554, 629
SspI AATATT 2 cut(s) 192, 670
SspMI CTAG 2 cut(s) 96, 677
SstI GAGCTC 1 cut(s) 50
StuI AGGCCT 1 cut(s) 1066
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 4 cut(s) 52, 173, 391, 720
TaaI ACNGT 3 cut(s) 11, 127, 266
TaiI ACGT 2 cut(s) 326, 1252
TaqI TCGA 1 cut(s) 33
TasI AATT 3 cut(s) 205, 421, 686
TatI WGTACW 1 cut(s) 850
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 7 cut(s) 17, 532, 632, 680, 913, 1052, 1106
Tru1I TTAA 4 cut(s) 312, 456, 657, 1258
Tru9I TTAA 4 cut(s) 312, 456, 657, 1258
TscAI CASTG 3 cut(s) 157, 739, 1083
TseFI GTSAC 1 cut(s) 737
TseI GCWGC 6 cut(s) 332, 599, 785, 1007, 1019, 1121
Tsp45I GTSAC 1 cut(s) 737
TspDTI ATGAA 3 cut(s) 499, 555, 596
TspRI CASTG 3 cut(s) 157, 739, 1083
VpaK11BI GGWCC 2 cut(s) 345, 728
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 205, 686
XmiI GTMKAC 2 cut(s) 33, 755
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 2 cut(s) 96, 677
Zsp2I ATGCAT 1 cut(s) 1219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.