Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0006527

Physical Location & Seq

Genomic Coordinates Reverse (-)

7228211 .. 7235250

Gene Structure 7040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1101700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2766 bp

ATGGATTCGTACCAAGCGCAGCAGCGGTACCTGAGACCGCCCCCGCCGCCGCAACCACCTTCCACGTCGGATCCCTATCACTACCAGCAGCAGCCGAGGCCACAGTGGTACCCCAATCAGTACCAGTACCCACCACCTCCACCACCACCTTACGCCGAGCATCTCCCTCCTCCGGGCTCTTATCCTCCGCCCCCTCACCCTTATCCTGCACATCCCCCAAATCACGCCCACTTCCCTCCTCCCCCTGCCGCTCCTCCTCATCAATCTCACCCTCACCTGCCTCCCCCTCCGCCCCGCCCTCCTCCCCATTCTTATCCTCAACACACCCAGGAGTGGGGAGCCGCTCCTCCGAGTTGGCCGAATTACGCAGCCCAAAATAATCAAGATTGGGAAGCCAAGGCTAAGGCATGGGCAGATGCCAGAACAATGGAGAATCAACATCAACAGGTGCAGTTTCCACCGGCGGGGAGATTAGAAGAACAAAGTCATTATCACGAACAGTATCCCCACAATGTTGACCCGCATTATTCTGGAAGTCACCATCAGTCATTTTCTACATCTAGCTATCAACAGGTTCCAGTTTCAGGCGCTCCAACACACTACCCACCGGGAATTCGTTCCCAGGAGACTTCATCTGTCGGCTCTGAACTATCTTCTTATGCTCATCACACTGTTGGAGATGGAACGCTAGCTGGGGACGCGAATGCTGTGTTTCACCATCAAGGAAGCCTATCTACAAGTTCATCTGTCCATCAGCAGGAGGTACCTTATAGTTATTCTTCTGTTACAGGCAATGAAGGGACTGCAGCTCAGGAAGGACAACATCACATACAGCCATCGCAGCCCTTTCCTTTTGCCTATGACAGTCAGTCTGCTGATCCAACAACCAATGTTGCTGACCAGCCTTTAGAATTTGCACCCGGGTTTAGCTCTGATCATGGTCCACACATGCAATCCAGCTATGCTTATACTGATTCACATGGAACTATAAGAGGTGTCGACCCAGCGACCACAGCACCCTCCATGAATACCTGGCCTAGTTCTGTTGCACCTGGTGTAGGTTATCCTCATAATGTTCCAGTTCCACTACAGCATGATCCCTCTAATGCAATACCCTCTCCTGTTCCTGGGCATGCTCCACATTCGTTTGGAAGTTTCCCATCTGCTGCAATGCCCTTTGCTCTCACTGCAGGAACCATCCCTGGTGATGCATATGGAGTTTCCACAGTTACTGAGCGCCCCAAAAAGGCTCCAGTGCCTAGTTGGCTTAGAGACGAAATTAAGAAAGCAGTCATCACAAGTACGTCTATGGGCCATCCTAAGGAGGAAACTCAATCTGTTGAGGATGAAGGTTTTGATAGATCTTCTGTGAAAGGTGATCAAGCAGACAGCAAGAGCATCAATTCTTCTAAATCAACAGAAGAAGAGGATGATGAGGATCAAGTGGAAGCTGCTAGGACTGTAGCAATTAACCAAGAAATAAAGCATATCCTAACTGAAGTTTTCCTGAAGGTTACTGATGAGCTGTTTGATGAAATTGCTACAAAAGTTCTTACTGAAGATGATCTGACAGTTGAAGTTGAACAGAGCACACCCACTTCAAACCATAAGGTATTGCCATCTCCGCCAGCAGTTACAGCTCCCAAGGCTTCTGCAAAAGTTCTAATTGGGGCCAAGTCTAAGGAATATGAGACTGAAGATGTCAAATCCAGTCCTACTTTACCTGGTGATGTATTGGGTCTTGCAGATTATGCTACAGATGATGAGGATGAAGATAGTGATATTCAGAGTTCTGGCATGCCAAATTCTGGGAAAGATGCTATGCTTCAGCAGTCATCTGTCAAAAAGCCTTCAAATGATAGGCATGATGCCACTGTAAATGACCGTTCTTCTGTAGAGCTTCAGGAGCATAGTAAAAGTCAGACAATTTTGGAGAGTGGACGGGGCAAAACCAGTTCACTTGAGTCCTATAATAGACACAAGCATGATGATAGTAATGGTGATAGAAATCTGCCAGATGGAACTACTGCCTCTAGGTTGAATGATACCGTAGGAATATTCAAACCTGAACTACCCAAAGAAAATGTCAATGTGAAAACCACACCAAAAGATGACCCACAAGTTATGGAGTCCAGGATGAAACCCGATAAGCATGATCGAGATGAGAGTAAAAAGAGTTTTGTGAAAGACATCAATAAGGAGGTAGAAAGTGGTAAGATTAGGACAGATGATAAGGGTGATGAGAATCGTAAGGGACAGTATCCTAGAAAGGAAAGGGCAGATGATCGGAATGGCTCACAAGTAAAGGTGAAAGAGCAAAGTGTGAAGGAATCTGAGTCAAGAAAAAGGTCTTCCCATGCTGATGCCAAGGAGGGTAGAAGAGAAACAGAGCGACTCCATAGGGCAGGTGCTAAAGAAGATAAGGACAGGAAAAGAGAACGGACAAAGGATAAGGAGGGCGATAGATCAAGACATAAACATTCTACTGACTCAAGCAGGCACAAGAGAAGGCGCTCCTCTTCTGTTGGCAGTAGAGGAAGAAACAGCAAGGATGATTCAAGTGATGAAGCTTCTGATGATTCTAAAAGGAAGCGGCATTCAAGGAGACGTAACTTATCACCATCACCCGTCAGGTCAAGGAGAAGACAAGTTTCGCGGTCTCCACATAGCAAGCATTCTCAGCGCAGGCATTCTCCTTATTCTTCTCTTGAGACGAGCAGGGGAAGAAGGTCAAGATCCAGATCACCTGTGCGGCGGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0035250 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228 Nucleotid_trans PNISR

Protein Analysis

922

Amino Acids

102.19

Weight (kDa)

6.71

Isoelectric Point (pI)

74.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620
fragaria_vesca	FvH4_4g25541
malus_domestica	MD13G1101700.v1.1 MD16G1102300.v1.1
prunus_persica	Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1
pyrus_communis	pycom13g08880 pycom16g08690
rosa_chinensis	RchiOBHm_Chr4g0432951
rosa_multiflora	Rmu_sc0001762.1_g000045
rosa_rugosa	Rorug04G0264300
rosa_samantha	Rh4AG318100 Rh4BG326200 Rh4CG341500 Rh4DG321400
rosa_wichuraiana	Rw4G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	285, 2396
Acc36I	ACCTGC	2 cut(s)	285, 2396
Acc65I	GGTACC	3 cut(s)	27, 108, 763
AccB1I	GGYRCC	3 cut(s)	27, 108, 763
AccB7I	CCANNNNNTGG	1 cut(s)	1808
AccBSI	CCGCTC	2 cut(s)	251, 344
AccI	GTMKAC	1 cut(s)	999
AccII	CGCG	2 cut(s)	701, 2656
AclWI	GGATC	6 cut(s)	65, 78, 872, 1091, 1446, 2730
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	3 cut(s)	612, 911, 1804
AcuI	CTGAAG	6 cut(s)	1518, 1529, 1578, 1716, 1811, 1886
AdeI	CACNNNGTG	1 cut(s)	1055
AfaI	GTAC	7 cut(s)	11, 29, 110, 122, 128, 765, 1303
AgsI	TTSAA	8 cut(s)	1577, 1583, 1602, 1854, 2041, 2062, 2559, 2601
AhdI	GACNNNNNGTC	1 cut(s)	868
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	8 cut(s)	327, 621, 1031, 1051, 1126, 1201, 1723, 2132
Alw21I	GWGCWC	1 cut(s)	1592
Alw26I	GTCTC	7 cut(s)	28, 620, 1266, 1685, 2599, 2664, 2705
AlwI	GGATC	6 cut(s)	65, 78, 872, 1091, 1446, 2730
AlwNI	CAGNNNCTG	1 cut(s)	1232
Ama87I	CYCGRG	1 cut(s)	920
AoxI	GGCC	5 cut(s)	98, 356, 1034, 1312, 1671
ApeKI	GCWGC	9 cut(s)	19, 22, 88, 91, 368, 806, 841, 1166, 1451
ApoI	RAATTY	3 cut(s)	612, 911, 1804
ArsI	GACNNNNNNTTYG	2 cut(s)	2070, 2102
Asp700I	GAANNNNTTC	1 cut(s)	616
Asp718I	GGTACC	3 cut(s)	27, 108, 763
AspLEI	GCGC	5 cut(s)	19, 590, 1239, 2514, 2685
AspS9I	GGNCC	3 cut(s)	941, 1312, 1671
AsuC2I	CCSGG	4 cut(s)	174, 609, 921, 922
AsuNHI	GCTAGC	1 cut(s)	688
AvaI	CYCGRG	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	941
AxyI	CCTNAGG	1 cut(s)	1320
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BamHI	GGATCC	1 cut(s)	70
BanI	GGYRCC	3 cut(s)	27, 108, 763
BanII	GRGCYC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BbsI	GAAGAC	2 cut(s)	2343, 2650
Bbv12I	GWGCWC	1 cut(s)	1592
BbvI	GCAGC	9 cut(s)	31, 34, 100, 103, 380, 818, 853, 1153, 1438
BciT130I	CCWGG	8 cut(s)	329, 623, 1033, 1053, 1128, 1203, 1725, 2134
BciVI	GTATCC	2 cut(s)	513, 2271
BclI	TGATCA	2 cut(s)	934, 1378
BcnI	CCSGG	4 cut(s)	174, 609, 921, 922
BcoDI	GTCTC	7 cut(s)	28, 620, 1266, 1685, 2599, 2664, 2705
BfaI	CTAG	7 cut(s)	561, 689, 1038, 1260, 1455, 2034, 2265
BfmI	CTRYAG	6 cut(s)	804, 1088, 1188, 1461, 1755, 1893
BfoI	RGCGCY	3 cut(s)	591, 1240, 2515
BfuAI	ACCTGC	2 cut(s)	285, 2396
BfuI	GTATCC	2 cut(s)	513, 2271
BglI	GCCNNNNNGGC	1 cut(s)	1264
BglII	AGATCT	1 cut(s)	1361
Bme18I	GGWCC	1 cut(s)	941
BmeRI	GACNNNNNGTC	1 cut(s)	868
BmeT110I	CYCGRG	1 cut(s)	920
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	3 cut(s)	941, 1312, 1671
BmiI	GGNNCC	9 cut(s)	29, 72, 110, 340, 576, 765, 1195, 1251, 1672
BmsI	GCATC	7 cut(s)	169, 406, 1198, 1407, 1807, 1858, 2353
BmtI	GCTAGC	1 cut(s)	692
BpiI	GAAGAC	2 cut(s)	2343, 2650
BpmI	CTGGAG	1 cut(s)	1236
Bpu10I	CCTNAGC	2 cut(s)	402, 810
BpuEI	CTTGAG	3 cut(s)	1982, 2476, 2729
BpuMI	CCSGG	4 cut(s)	174, 609, 921, 922
BsaBI	GATNNNNATC	5 cut(s)	75, 1437, 2007, 2244, 2740
BsaI	GGTCTC	2 cut(s)	28, 2664
BsaJI	CCNNGG	9 cut(s)	95, 327, 396, 621, 920, 1127, 1201, 1644, 2367
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	6 cut(s)	124, 578, 1079, 1253, 1710, 1953
Bse21I	CCTNAGG	1 cut(s)	1320
Bse3DI	GCAATG	2 cut(s)	799, 1176
Bse8I	GATNNNNATC	5 cut(s)	75, 1437, 2007, 2244, 2740
BseBI	CCWGG	8 cut(s)	329, 623, 1033, 1053, 1128, 1203, 1725, 2134
BseDI	CCNNGG	9 cut(s)	95, 327, 396, 621, 920, 1127, 1201, 1644, 2367
BseGI	GGATG	8 cut(s)	211, 1197, 1315, 1351, 1435, 1774, 2142, 2557
BseJI	GATNNNNATC	5 cut(s)	75, 1437, 2007, 2244, 2740
BseMI	GCAATG	2 cut(s)	799, 1176
BseMII	CTCAG	5 cut(s)	23, 824, 1224, 2325, 2693
BseNI	ACTGG	6 cut(s)	124, 578, 1079, 1253, 1710, 1953
BseRI	GAGGAG	7 cut(s)	159, 228, 243, 246, 291, 336, 2506
BseXI	GCAGC	9 cut(s)	31, 34, 100, 103, 380, 818, 853, 1153, 1438
BseYI	CCCAGC	2 cut(s)	692, 1003
BsgI	GTGCAG	2 cut(s)	192, 470
Bsh1236I	CGCG	2 cut(s)	701, 2656
BshFI	GGCC	5 cut(s)	100, 358, 1036, 1314, 1673
BshNI	GGYRCC	3 cut(s)	27, 108, 763
BsiHKAI	GWGCWC	1 cut(s)	1592
BsiHKCI	CYCGRG	1 cut(s)	920
BsiSI	CCGG	4 cut(s)	173, 461, 608, 921
BslFI	GGGAC	3 cut(s)	710, 814, 2268
BsmAI	GTCTC	7 cut(s)	28, 620, 1266, 1685, 2599, 2664, 2705
BsmBI	CGTCTC	3 cut(s)	1266, 2599, 2705
BsmFI	GGGAC	3 cut(s)	710, 814, 2268
BsmI	GAATGC	4 cut(s)	709, 2596, 2674, 2689
BsnI	GGCC	5 cut(s)	100, 358, 1036, 1314, 1673
Bso31I	GGTCTC	2 cut(s)	28, 2664
BsoBI	CYCGRG	1 cut(s)	920
Bsp1286I	GDGCHC	2 cut(s)	179, 1592
BspANI	GGCC	5 cut(s)	100, 358, 1036, 1314, 1673
BspCNI	CTCAG	5 cut(s)	24, 823, 1225, 2326, 2692
BspFNI	CGCG	2 cut(s)	701, 2656
BspLI	GGNNCC	9 cut(s)	29, 72, 110, 340, 576, 765, 1195, 1251, 1672
BspMAI	CTGCAG	2 cut(s)	808, 1192
BspMI	ACCTGC	2 cut(s)	285, 2396
BspOI	GCTAGC	1 cut(s)	692
BspPI	GGATC	6 cut(s)	65, 78, 872, 1091, 1446, 2730
BspT107I	GGYRCC	3 cut(s)	27, 108, 763
BspTNI	GGTCTC	2 cut(s)	28, 2664
BsrBI	CCGCTC	2 cut(s)	251, 344
BsrDI	GCAATG	2 cut(s)	799, 1176
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	6 cut(s)	124, 578, 1079, 1253, 1710, 1953
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	9 cut(s)	95, 327, 396, 621, 920, 1127, 1201, 1644, 2367
BssT1I	CCWWGG	3 cut(s)	396, 1644, 2367
Bst2UI	CCWGG	8 cut(s)	329, 623, 1033, 1053, 1128, 1203, 1725, 2134
Bst6I	CTCTTC	3 cut(s)	1419, 2374, 2524
BstAPI	GCANNNNNTGC	1 cut(s)	1751
BstC8I	GCNNGC	7 cut(s)	690, 1134, 1629, 1799, 2498, 2672, 2687
BstDEI	CTNAG	9 cut(s)	32, 402, 810, 1233, 1268, 1320, 1680, 2334, 2679
BstENI	CCTNNNNNAGG	1 cut(s)	1056
BstF5I	GGATG	8 cut(s)	211, 1197, 1315, 1351, 1435, 1774, 2142, 2557
BstFNI	CGCG	2 cut(s)	701, 2656
BstH2I	RGCGCY	3 cut(s)	591, 1240, 2515
BstHHI	GCGC	5 cut(s)	19, 590, 1239, 2514, 2685
BstMAI	GTCTC	7 cut(s)	28, 620, 1266, 1685, 2599, 2664, 2705
BstNI	CCWGG	8 cut(s)	329, 623, 1033, 1053, 1128, 1203, 1725, 2134
BstNSI	RCATGY	3 cut(s)	952, 1136, 1801
BstSFI	CTRYAG	6 cut(s)	804, 1088, 1188, 1461, 1755, 1893
BstUI	CGCG	2 cut(s)	701, 2656
BstV1I	GCAGC	9 cut(s)	31, 34, 100, 103, 380, 818, 853, 1153, 1438
BstV2I	GAAGAC	2 cut(s)	2343, 2650
BstX2I	RGATCY	3 cut(s)	70, 1361, 2735
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	3 cut(s)	70, 1361, 2735
Bsu36I	CCTNAGG	1 cut(s)	1320
BsuI	GTATCC	2 cut(s)	513, 2271
BsuRI	GGCC	5 cut(s)	100, 358, 1036, 1314, 1673
BtgZI	GCGATG	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	66
BtsCI	GGATG	8 cut(s)	211, 1197, 1315, 1351, 1435, 1774, 2142, 2557
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	5 cut(s)	110, 669, 1185, 1260, 1872
BveI	ACCTGC	2 cut(s)	285, 2396
Cac8I	GCNNGC	7 cut(s)	690, 1134, 1629, 1799, 2498, 2672, 2687
CaiI	CAGNNNCTG	1 cut(s)	1232
CfoI	GCGC	5 cut(s)	19, 590, 1239, 2514, 2685
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	3 cut(s)	941, 1312, 1671
Cfr9I	CCCGGG	1 cut(s)	920
CseI	GACGC	1 cut(s)	707
CsiI	ACCWGGT	2 cut(s)	1051, 1723
Csp6I	GTAC	7 cut(s)	10, 28, 109, 121, 127, 764, 1302
CviQI	GTAC	7 cut(s)	10, 28, 109, 121, 127, 764, 1302
DdeI	CTNAG	9 cut(s)	32, 402, 810, 1233, 1268, 1320, 1680, 2334, 2679
DraIII	CACNNNGTG	1 cut(s)	1055
DriI	GACNNNNNGTC	1 cut(s)	868
EaeI	YGGCCR	1 cut(s)	356
Eam1104I	CTCTTC	3 cut(s)	1419, 2374, 2524
Eam1105I	GACNNNNNGTC	1 cut(s)	868
EarI	CTCTTC	3 cut(s)	1419, 2374, 2524
EciI	GGCGGA	3 cut(s)	177, 279, 1614
Eco130I	CCWWGG	3 cut(s)	396, 1644, 2367
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	2 cut(s)	28, 2664
Eco47I	GGWCC	1 cut(s)	941
Eco57I	CTGAAG	6 cut(s)	1518, 1529, 1578, 1716, 1811, 1886
Eco81I	CCTNAGG	1 cut(s)	1320
Eco88I	CYCGRG	1 cut(s)	920
EcoNI	CCTNNNNNAGG	1 cut(s)	1056
EcoRI	GAATTC	1 cut(s)	612
EcoRII	CCWGG	8 cut(s)	327, 621, 1031, 1051, 1126, 1201, 1723, 2132
EcoT14I	CCWWGG	3 cut(s)	396, 1644, 2367
EcoT22I	ATGCAT	1 cut(s)	1213
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	3 cut(s)	396, 1644, 2367
Esp3I	CGTCTC	3 cut(s)	1266, 2599, 2705
FaqI	GGGAC	3 cut(s)	710, 814, 2268
FauI	CCCGC	4 cut(s)	51, 302, 457, 528
FauNDI	CATATG	1 cut(s)	1213
FbaI	TGATCA	2 cut(s)	934, 1378
FblI	GTMKAC	1 cut(s)	999
FokI	GGATG	8 cut(s)	198, 1184, 1302, 1358, 1442, 1781, 2149, 2564
FriOI	GRGCYC	1 cut(s)	179
FspBI	CTAG	7 cut(s)	561, 689, 1038, 1260, 1455, 2034, 2265
GlaI	GCGC	5 cut(s)	18, 589, 1238, 2513, 2684
GsaI	CCCAGC	2 cut(s)	696, 1007
GsuI	CTGGAG	1 cut(s)	1236
HaeII	RGCGCY	3 cut(s)	591, 1240, 2515
HaeIII	GGCC	5 cut(s)	100, 358, 1036, 1314, 1673
HapII	CCGG	4 cut(s)	173, 461, 608, 921
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	5 cut(s)	19, 590, 1239, 2514, 2685
Hin6I	GCGC	5 cut(s)	17, 588, 1237, 2512, 2683
HinP1I	GCGC	5 cut(s)	17, 588, 1237, 2512, 2683
HincII	GTYRAC	2 cut(s)	517, 1000
HindII	GTYRAC	2 cut(s)	517, 1000
HindIII	AAGCTT	1 cut(s)	2568
HpaII	CCGG	4 cut(s)	173, 461, 608, 921
Hpy166II	GTNNAC	5 cut(s)	517, 944, 1000, 1940, 1958
Hpy8I	GTNNAC	5 cut(s)	517, 944, 1000, 1940, 1958
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	9 cut(s)	69, 791, 809, 1343, 1504, 1860, 2320, 2502, 2721
HpyCH4IV	ACGT	3 cut(s)	65, 1304, 2608
HpyF3I	CTNAG	9 cut(s)	32, 402, 810, 1233, 1268, 1320, 1680, 2334, 2679
HpySE526I	ACGT	3 cut(s)	65, 1304, 2608
HspAI	GCGC	5 cut(s)	17, 588, 1237, 2512, 2683
KpnI	GGTACC	3 cut(s)	31, 112, 767
Ksp22I	TGATCA	2 cut(s)	934, 1378
LmnI	GCTCC	9 cut(s)	256, 338, 349, 595, 1141, 1255, 1645, 1906, 2519
Lsp1109I	GCAGC	9 cut(s)	31, 34, 100, 103, 380, 818, 853, 1153, 1438
LweI	GCATC	7 cut(s)	169, 406, 1198, 1407, 1807, 1858, 2353
MabI	ACCWGGT	2 cut(s)	1051, 1723
MaeI	CTAG	7 cut(s)	561, 689, 1038, 1260, 1455, 2034, 2265
MaeII	ACGT	3 cut(s)	65, 1304, 2608
MaeIII	GTNAC	6 cut(s)	536, 784, 1228, 1513, 1633, 2609
MbiI	CCGCTC	2 cut(s)	251, 344
MflI	RGATCY	3 cut(s)	70, 1361, 2735
MhlI	GDGCHC	2 cut(s)	179, 1592
MlyI	GAGTC	5 cut(s)	1973, 2138, 2345, 2388, 2483
MmeI	TCCRAC	4 cut(s)	48, 617, 655, 905
Mph1103I	ATGCAT	1 cut(s)	1213
MroXI	GAANNNNTTC	1 cut(s)	616
MseI	TTAA	2 cut(s)	1281, 1470
MslI	CAYNNNNRTG	2 cut(s)	1983, 2361
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	4 cut(s)	173, 461, 608, 921
Mva1269I	GAATGC	4 cut(s)	709, 2596, 2674, 2689
MvaI	CCWGG	8 cut(s)	329, 623, 1033, 1053, 1128, 1203, 1725, 2134
MvnI	CGCG	2 cut(s)	701, 2656
NciI	CCSGG	4 cut(s)	174, 609, 921, 922
NdeI	CATATG	1 cut(s)	1213
NheI	GCTAGC	1 cut(s)	688
NlaIV	GGNNCC	9 cut(s)	29, 72, 110, 340, 576, 765, 1195, 1251, 1672
NmeAIII	GCCGAG	2 cut(s)	120, 181
NmuCI	GTSAC	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	1213
NspI	RCATGY	3 cut(s)	952, 1136, 1801
PaeI	GCATGC	2 cut(s)	1136, 1801
PaqCI	CACCTGC	2 cut(s)	285, 2396
PctI	GAATGC	4 cut(s)	709, 2596, 2674, 2689
PdmI	GAANNNNTTC	1 cut(s)	616
PfeI	GAWTC	7 cut(s)	5, 433, 974, 2245, 2330, 2555, 2579
PflMI	CCANNNNNTGG	1 cut(s)	1808
PfoI	TCCNGGA	1 cut(s)	2132
PleI	GAGTC	5 cut(s)	1972, 2137, 2344, 2388, 2483
PpsI	GAGTC	5 cut(s)	1972, 2137, 2344, 2388, 2483
Psp6I	CCWGG	8 cut(s)	327, 621, 1031, 1051, 1126, 1201, 1723, 2132
PspFI	CCCAGC	2 cut(s)	692, 1003
PspGI	CCWGG	8 cut(s)	327, 621, 1031, 1051, 1126, 1201, 1723, 2132
PspN4I	GGNNCC	9 cut(s)	29, 72, 110, 340, 576, 765, 1195, 1251, 1672
PspPI	GGNCC	3 cut(s)	941, 1312, 1671
PstI	CTGCAG	2 cut(s)	808, 1192
PstNI	CAGNNNCTG	1 cut(s)	1232
PsuI	RGATCY	3 cut(s)	70, 1361, 2735
RsaI	GTAC	7 cut(s)	11, 29, 110, 122, 128, 765, 1303
RsaNI	GTAC	7 cut(s)	10, 28, 109, 121, 127, 764, 1302
RseI	CAYNNNNRTG	2 cut(s)	1983, 2361
SalI	GTCGAC	1 cut(s)	998
SaqAI	TTAA	2 cut(s)	1281, 1470
Sau96I	GGNCC	3 cut(s)	941, 1312, 1671
SchI	GAGTC	5 cut(s)	1973, 2138, 2345, 2388, 2483
SduI	GDGCHC	2 cut(s)	179, 1592
SexAI	ACCWGGT	2 cut(s)	1051, 1723
SfaNI	GCATC	7 cut(s)	169, 406, 1198, 1407, 1807, 1858, 2353
SfcI	CTRYAG	6 cut(s)	804, 1088, 1188, 1461, 1755, 1893
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	941
SmaI	CCCGGG	1 cut(s)	922
SmiMI	CAYNNNNRTG	2 cut(s)	1983, 2361
SmlI	CTYRAG	3 cut(s)	1961, 2491, 2708
SmoI	CTYRAG	3 cut(s)	1961, 2491, 2708
SphI	GCATGC	2 cut(s)	1136, 1801
SspI	AATATT	1 cut(s)	2058
SspMI	CTAG	7 cut(s)	561, 689, 1038, 1260, 1455, 2034, 2265
StyI	CCWWGG	3 cut(s)	396, 1644, 2367
TaiI	ACGT	3 cut(s)	68, 1307, 2611
TaqI	TCGA	2 cut(s)	999, 2158
TauI	GCSGC	7 cut(s)	49, 52, 251, 344, 2596, 2755, 2758
TfiI	GAWTC	7 cut(s)	5, 433, 974, 2245, 2330, 2555, 2579
Tru1I	TTAA	2 cut(s)	1281, 1470
Tru9I	TTAA	2 cut(s)	1281, 1470
TscAI	CASTG	5 cut(s)	110, 676, 1192, 1260, 1879
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	9 cut(s)	19, 22, 88, 91, 368, 806, 841, 1166, 1451
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	9 cut(s)	621, 732, 810, 1040, 1362, 1548, 1785, 2153, 2580
TspGWI	ACGGA	1 cut(s)	2455
TspMI	CCCGGG	1 cut(s)	920
TspRI	CASTG	5 cut(s)	110, 676, 1192, 1260, 1879
Van91I	CCANNNNNTGG	1 cut(s)	1808
VpaK11BI	GGWCC	1 cut(s)	941
XagI	CCTNNNNNAGG	1 cut(s)	1056
XapI	RAATTY	3 cut(s)	612, 911, 1804
XceI	RCATGY	3 cut(s)	952, 1136, 1801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1260
XmaI	CCCGGG	1 cut(s)	920
XmiI	GTMKAC	1 cut(s)	999
XmnI	GAANNNNTTC	1 cut(s)	616
XspI	CTAG	7 cut(s)	561, 689, 1038, 1260, 1455, 2034, 2265
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.