Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Forward (+)

43576815 .. 43583923

Gene Structure 7109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4182 bp

ATGAGCGCCACCACACCCTCCTCACCATCTCTAACAGACTCCGATATCATCCGCTTAGCCCAATCCTGCGCCCCAATCCCCTCCTCTCTTCTCTCCACCCAATCCCACCCAACCCTCCTCTCCTACCTCACTTCCCGCTCTCAATCCTCCTCACCCTCTCAGCCCGTCTCCAATTACACACTCTCTCTCCTCTCCCTCATCTCCCAATCTCCCCAAACCCACTCTCTCTCTACCCTCCTCTCCTCTCTCCTCCTCTCCTACACCCACCTCTTCACCTCCTTTAAAATCCCACACGACCCCAACTCCCTCAAGACCCTCCAATTCTTCCACACCCTATTACCCCACGTACCCACTTCTCATCTCCCCCAAATAATCGAACCCATTTTGTCATTTTCCCCCCAAATTACCGACTCCGAAAACGCCCAGATCCTCGATCTCCTCCCCCGGTGCTTGAGCTTGATTCGAAGCTCCGACGAGGTCGAACGCGGCGGCCATGTCGTCAATTCGGTGCTCGATCAGATTCTGGAGCTCAATTGGTCCAAGGGACTGTTGATCAAGATGGTTTCGATCGTAAGGGACTTTCCTGTTCTTGATAAATTGAGGGCCAGAGAGTTTGTAGACAAGGTGTTCGATGGAATGTCTAGCTTGGACTTACAAGACTTGCCGTCGCTTGTGTATCAATTGCTCGTTTTGGCGTCGAAAGGGTTTGTTAAGAAGGATGTGATTGAAGGAATTGTGATGTTTTTCGGGTCGAAAATGGGGAGGAAGAAGGCGAGCTCTATAGTTAGGCAAGTGGAAGGGACTGTGTTGCTGCATGTTAACTTTGCCGTGAAGCAGGACCCTTCATTGGGACAAGAGGTGATGGGGCTTGTGAAGTCTGATCTTAGAGCTTTCAATCATTTCACTGTTGCTGTTTTGTTATCGGTTTCGAGGGTGAGGAGGTTTGGTGAGGCATCAATGGGGGCTTTGAAAATGGCGATTCTAACTGCATACCGTGATTACAAGTTTGCTAAAGAATGTAAATGGATACCGGATGACATGAAGGAAGAATATCTGCACAATGTCAAAGTGGTCGAGAAGGCCATGTTAAGAGCGGTTAATGAGAGCAACTATGGAAGGGAACACATTGTGCCTAGCATTTTGCAGTTTGCTTTTGTATTGCTAGAGTCGGTGGAAGAGGGAAACCATAAAGAGCTCTGCAATTTAAGTGGTTTGGTAGGCATTGAGGAGCTTGCTATTCAGATGCTAAAAGCTATATTTGTGGCCCATGATATGGCTAGAAATGAGATTATTGAGCAGTGTAAATTTCGGATCCTTTCTTTGAAGCCAGAGCAGAGCATGGTTATCATAAGACTTCTCAGTAATCTAGCTCAAAGTTATCCGTACCCCATGTTAGAACATGTCTCCCGGCTAAAGGAGTTGTTGGATTACTTCACTTTCATGCAAGGCAAGGTTGCTGCTCAACTTGTTACTGCTTTGTTGCCTCTTATCAAGTTCAGCCGTGATCTCAAGGATTACACTATTTTGGTAATGCGTAAGGCGATGTTTAGACGAGAAGATACAATTCGTCTTGCAGCAACCAATGCTGTTATTGATTTGATTCTGGCCGAAAAGCAATCCAAGAAAGGTAGCAGTCAGCAATCTGAGATACCCTACAATGTTGGGGGAGGCCTGTTTCAAGAGCTCAGTGGTCTATTGCAGAGATGTCTTTATCAACCTGCAAATGTCAAAGAAGTCATGTATCATGGACTTGTGAAGCTTGTGTTGATGGACCCATCTAGTGGGGGGGCTGTCTTTGATTTTTTGTTGCCTCACTTCCTCCATTTTTTTAAAGAGCAGGATGCAGATGTTCAATTAGGAATTAGGTGCTGCATAAAATCAGAGAGTGGCAAAGCTTATGTTGAAGAGCCCTTAGATTGCCTTCTGTCTTGTGTTTCTTGGATGTTACTTCTACAACCAAATGGAAAAACTGAGAAAGCCTTGAATTCTTCATGGGCATGTTTGGGTTTCTCCCTTTCACAAGAAAACGAGGTAGGAAGAAATTCGTCTGCTGACTCATTCTACAGTTCTTTCTTGAAGATTCGGAAGTCTCTACGAAATCAGAATATTGAAGGCATCTTTGGTCAAACTCAGGATGGAGGCTCTTCATCTTTTGAAGACAACAAAAGAAAATGCTCCGCTTTTGTTTTATCAGGAATTATTGAAGTACTCGTGAATGCTATTGCTACTGAGTTGGACAAAGCATCGGATAGAACGAAATTAGATCTTGAAAAGGAGCTTATTCAGTTTGTTGAGCTTCATCATTCACTCAATAAGGATACATGTTTCTCCAGCAAGAGTACTGCAGTAAGAAAAGGGAGTACTCGCACTCCTGCTCACGATATACTGAACAACATCAATTCAAGCCACTCTAAAGAAATGCAAGGACGGATTTCCTTCTTTGCAACTTCAAGCATATATCAGATATTGCAAACACTGTTGAGACTACTTGATACTGATTATTCTAATAATGTTGAAGCTTCCCAAATGCATAGTCAGTCTACCAGCAAGACATCCAAATGCAGCTCTGAATTTATTTCTTTTGTCTTGAATGTGTCCCTTAGTCATATAAAATCTTCCCTTCTTCTGCGACATGAAGACCCTTTGAGAACTTTAATCTATGGGGGAATCAAGATCCTGGGGTCCCCCTTGTTGAACCTAATTTCTTTGTTCAAATCAGGGCCAAAGTTGGTGATGGATCAAAAGAAAAAGGAAGCGAAGGGGAAAAAAGATGTCGGACGAAGGGAGCATCTTCATCTGGCCTTGATTTGCTTGAAGGAATTGATAATGATTTGTTCTAATTCAGACTTGACTGGTTTGCTTGAAGACGTGGTGTCAATTTCCACTCTTCAGGATGCTGATTTGGAAACTGAATGCGAAAGAGCCTCTAGAATTGAGGATCCACATATAAGGAGCAAAGAACTGTTCATTTTGAAGACATTGAAGCCTCTATTTTCTGAGCTTCTTGCAGTTTCATTATTTGGTGAAGTTGAGATTATTTGTGACCTGATATTGATGATTGGGGGAAAATTGCCATGCCAATTGAGGAACTCCCATGGAGCTTGGGCTATTAGTCTTTGCAAAAACAATGAAATAAAAAACATGAAGGTTGGAAAAAGTGTTGTGACACTTGCTATAAGTTTAAGCTCCCCTCCAAATGATCTAGCTATATCTCAAGACATGGCTAGAGAGCTGTTACAGGTTATTGGATCAGAGGGAGATACTCCAGAGGAGGTGTCCGAGATATACCCCCTCATAAACCATCAAACAAGTTTGGCAATAAATTCCTGTATACTGCACATTGTTGAAGCAGTTGTAGTTGACATGGATTGGGCCATCAAAAGATTGAAGACATTCTCTTTAGTCTCCCAAAAAGGGATTCATCTGAATCAGAACAGTGAGGAATCTCCTGAGTTGGCATTTGAGGAAAATCTCTATGCTAGGGCAGAAGCAGTGGTGAAAGTACTCTCATCTTTTGTTTCAATGAGCCTGAGTGATACGCAAGCTGAGCATGTGCTGCGACTGGCAGCAAGGTTTTACAAGCATTTAGCTCAGATGTCAAAGCTTAGGATTGCTACAAAAGGTTGTAAACAGATTTTTCCGAGCCTCAAGTTTCAGAAGCTTGTGGAGGTAACTAGCAAGGAGCTGACAGTTCCTCTGTATATCTTTGTGGAAATTATGCAAAAGAAACAACAAGAGAATGCCAATAAAAAGGGAATTATCAACAAAATAAAGAGGGAGAACAGATGCATCCCCGACCTCATATTTCAGATAGAAGATTATGAGAAATATCTCATCCAGCTTAGCAAGGTGACCAAAGTAAATTTATTAAGGCATGCCAAGCGTAGCACTGCACGAGACTTCAGAATAAAACTAAATGAGGAGAGCAGGGAAGAAGAAAATGCTCCGAGTCTTGAAGCAAACCGTGACAATATGAATGCAGTTGAAAATGAGTCTGCTGAGGATCTTGATGATAATGAAGGAAATGCATCAGATAGGGTTTTGTCACCGGATTATATTAATAGTCCTCCGGCTGTGGAGGATTCAGGCTCTGACAATGAAGATGGAGATGATCATCCTCCTAGTGCCAAGAGGCTGAAGAGAGTCAACAGAGTTGTGGAGGACTCTGAGGATGAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0035250 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228 Nucleotid_trans PNISR

Protein Analysis

1393

Amino Acids

155.86

Weight (kDa)

6.45

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FANCI_S1	PF14675	113 - 278	2.2e-18	FANCI solenoid 1
FANCI_HD1	PF14679	282 - 363	2.8e-22	FANCI helical domain 1
FANCI_S2	PF14676	376 - 530	6.3e-49	FANCI solenoid 2
FANCI_HD2	PF14680	540 - 774	7.3e-51	FANCI helical domain 2
FANCI_S4	PF14678	1072 - 1306	1.7e-72	FANCI solenoid 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1726
AccB7I	CCANNNNNTGG	2 cut(s)	1273, 1781
AccBSI	CCGCTC	2 cut(s)	138, 1094
AccI	GTMKAC	3 cut(s)	618, 2540, 3331
AccII	CGCG	1 cut(s)	486
AciI	CCGC	6 cut(s)	52, 136, 486, 489, 1094, 2178
AclWI	GGATC	9 cut(s)	421, 1306, 1319, 2668, 2745, 2933, 2946, 3256, 4011
AcoI	YGGCCR	2 cut(s)	490, 1605
AcsI	RAATTY	6 cut(s)	1304, 1984, 2041, 2570, 3322, 3862
AcuI	CTGAAG	3 cut(s)	2873, 3886, 4157
AcyI	GRCGYC	1 cut(s)	695
AdeI	CACNNNGTG	1 cut(s)	1129
AfaI	GTAC	6 cut(s)	348, 1385, 2208, 2341, 2362, 3504
AfiI	CCNNNNNNNGG	6 cut(s)	847, 848, 1273, 1414, 1781, 3414
AflIII	ACRYGT	2 cut(s)	1399, 2321
AhdI	GACNNNNNGTC	2 cut(s)	664, 2872
AjiI	CACGTC	1 cut(s)	2869
AjnI	CCWGG	1 cut(s)	2676
AjuI	GAANNNNNNNTTGG	4 cut(s)	2103, 2135, 3402, 3434
Alw21I	GWGCWC	5 cut(s)	513, 531, 779, 1197, 1686
Alw26I	GTCTC	6 cut(s)	172, 1408, 2094, 2476, 3409, 3891
AlwI	GGATC	9 cut(s)	421, 1306, 1319, 2668, 2745, 2933, 2946, 3256, 4011
AlwNI	CAGNNNCTG	2 cut(s)	523, 4091
AoxI	GGCC	9 cut(s)	490, 603, 1080, 1263, 1605, 1669, 2720, 2799, 3372
ApeKI	GCWGC	7 cut(s)	811, 1457, 1574, 1869, 2562, 3556, 3566
ApoI	RAATTY	6 cut(s)	1304, 1984, 2041, 2570, 3322, 3862
ArsI	GACNNNNNNTTYG	4 cut(s)	611, 643, 2518, 2550
AseI	ATTAAT	1 cut(s)	4059
Asp700I	GAANNNNTTC	2 cut(s)	2041, 3392
AspLEI	GCGC	2 cut(s)	8, 71
AspS9I	GGNCC	8 cut(s)	537, 603, 838, 1264, 1771, 2682, 2720, 3372
AsuC2I	CCSGG	2 cut(s)	445, 1408
AsuII	TTCGAA	1 cut(s)	463
AvaII	GGWCC	4 cut(s)	537, 838, 1771, 2682
BamHI	GGATCC	2 cut(s)	1311, 2938
BanII	GRGCYC	5 cut(s)	531, 779, 1197, 1686, 1911
BauI	CACGAG	2 cut(s)	2210, 3894
BbsI	GAAGAC	5 cut(s)	2163, 2643, 2871, 2981, 3395
Bbv12I	GWGCWC	5 cut(s)	513, 531, 779, 1197, 1686
BbvCI	CCTCAGC	1 cut(s)	3999
BbvI	GCAGC	7 cut(s)	798, 1444, 1586, 1856, 2574, 3543, 3578
BceAI	ACGGC	3 cut(s)	649, 812, 1485
BciT130I	CCWGG	1 cut(s)	2678
BciVI	GTATCC	2 cut(s)	1020, 2311
BclI	TGATCA	2 cut(s)	552, 4111
BcnI	CCSGG	2 cut(s)	445, 1408
BcoDI	GTCTC	6 cut(s)	172, 1408, 2094, 2476, 3409, 3891
BfmI	CTRYAG	3 cut(s)	780, 2062, 2343
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	1726
BfuI	GTATCC	2 cut(s)	1020, 2311
BglII	AGATCT	1 cut(s)	2263
BisI	GCNGC	9 cut(s)	487, 490, 812, 1458, 1575, 1870, 2563, 3557, 3567
BlpI	GCTNAGC	3 cut(s)	55, 3546, 3842
BlsI	GCNGC	9 cut(s)	488, 491, 813, 1459, 1576, 1871, 2564, 3558, 3568
BmcAI	AGTACT	4 cut(s)	2208, 2341, 2362, 3504
Bme1390I	CCNGG	3 cut(s)	445, 1408, 2678
Bme18I	GGWCC	4 cut(s)	537, 838, 1771, 2682
BmeRI	GACNNNNNGTC	2 cut(s)	664, 2872
BmgBI	CACGTC	1 cut(s)	2869
BmgT120I	GGNCC	8 cut(s)	537, 603, 838, 1264, 1771, 2682, 2720, 3372
BmiI	GGNNCC	6 cut(s)	840, 1313, 1773, 2683, 2684, 2940
BmrFI	CCNGG	3 cut(s)	445, 1408, 2678
BpiI	GAAGAC	5 cut(s)	2163, 2643, 2871, 2981, 3395
BpmI	CTGGAG	3 cut(s)	545, 2314, 3249
Bpu10I	CCTNAGC	2 cut(s)	3605, 3999
Bpu1102I	GCTNAGC	3 cut(s)	55, 3546, 3842
Bpu14I	TTCGAA	1 cut(s)	463
BpuEI	CTTGAG	5 cut(s)	293, 472, 1493, 3198, 3632
BpuMI	CCSGG	2 cut(s)	445, 1408
BsaAI	YACGTR	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	4113
BsaHI	GRCGYC	1 cut(s)	695
BsaJI	CCNNGG	4 cut(s)	443, 540, 2677, 3094
BsaWI	WCCGGW	2 cut(s)	1030, 4048
BsaXI	ACNNNNNCTCC	8 cut(s)	171, 201, 287, 317, 931, 961, 2353, 2383
Bsc4I	CCNNNNNNNGG	6 cut(s)	847, 848, 1273, 1414, 1781, 3414
Bse1I	ACTGG	2 cut(s)	2857, 3567
Bse8I	GATNNNNATC	1 cut(s)	4113
BseBI	CCWGG	1 cut(s)	2678
BseDI	CCNNGG	4 cut(s)	443, 540, 2677, 3094
BseJI	GATNNNNATC	1 cut(s)	4113
BseLI	CCNNNNNNNGG	6 cut(s)	847, 848, 1273, 1414, 1781, 3414
BseNI	ACTGG	2 cut(s)	2857, 3567
BseXI	GCAGC	7 cut(s)	798, 1444, 1586, 1856, 2574, 3543, 3578
BsgI	GTGCAG	3 cut(s)	1040, 3320, 3876
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	9 cut(s)	492, 605, 1082, 1265, 1607, 1671, 2722, 2801, 3374
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	5 cut(s)	513, 531, 779, 1197, 1686
BsiSI	CCGG	5 cut(s)	445, 1031, 1408, 4049, 4070
BslFI	GGGAC	6 cut(s)	558, 590, 814, 864, 2581, 2668
BslI	CCNNNNNNNGG	6 cut(s)	847, 848, 1273, 1414, 1781, 3414
BsmAI	GTCTC	6 cut(s)	172, 1408, 2094, 2476, 3409, 3891
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	6 cut(s)	558, 590, 814, 864, 2581, 2668
BsmI	GAATGC	4 cut(s)	2221, 2918, 3745, 3982
BsnI	GGCC	9 cut(s)	492, 605, 1082, 1265, 1607, 1671, 2722, 2801, 3374
Bsp119I	TTCGAA	1 cut(s)	463
Bsp1286I	GDGCHC	6 cut(s)	513, 531, 779, 1197, 1686, 1911
Bsp1720I	GCTNAGC	3 cut(s)	55, 3546, 3842
Bsp19I	CCATGG	1 cut(s)	3094
BspACI	CCGC	6 cut(s)	52, 136, 486, 489, 1094, 2178
BspANI	GGCC	9 cut(s)	492, 605, 1082, 1265, 1607, 1671, 2722, 2801, 3374
BspFNI	CGCG	1 cut(s)	486
BspLI	GGNNCC	6 cut(s)	840, 1313, 1773, 2683, 2684, 2940
BspMAI	CTGCAG	1 cut(s)	2347
BspMI	ACCTGC	1 cut(s)	1726
BspPI	GGATC	9 cut(s)	421, 1306, 1319, 2668, 2745, 2933, 2946, 3256, 4011
BspQI	GCTCTTC	2 cut(s)	1899, 2149
BspT104I	TTCGAA	1 cut(s)	463
BsrBI	CCGCTC	2 cut(s)	138, 1094
BsrI	ACTGG	2 cut(s)	2857, 3567
BssECI	CCNNGG	4 cut(s)	443, 540, 2677, 3094
BssNAI	GTATAC	1 cut(s)	3332
BssNI	GRCGYC	1 cut(s)	695
BssSI	CACGAG	2 cut(s)	2210, 3894
BssT1I	CCWWGG	2 cut(s)	540, 3094
Bst1107I	GTATAC	1 cut(s)	3332
Bst2BI	CACGAG	2 cut(s)	2210, 3894
Bst2UI	CCWGG	1 cut(s)	2678
Bst6I	CTCTTC	7 cut(s)	93, 275, 1170, 1899, 2149, 2892, 4133
BstACI	GRCGYC	1 cut(s)	695
BstAPI	GCANNNNNTGC	2 cut(s)	1583, 3556
BstBAI	YACGTR	1 cut(s)	346
BstBI	TTCGAA	1 cut(s)	463
BstC8I	GCNNGC	4 cut(s)	775, 1233, 3543, 3876
BstDSI	CCRYGG	1 cut(s)	3094
BstEII	GGTNACC	1 cut(s)	3850
BstFNI	CGCG	1 cut(s)	486
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	2 cut(s)	8, 71
BstMAI	GTCTC	6 cut(s)	172, 1408, 2094, 2476, 3409, 3891
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	4 cut(s)	1583, 3547, 3556, 3880
BstNI	CCWGG	1 cut(s)	2678
BstNSI	RCATGY	6 cut(s)	818, 1403, 2001, 2325, 3554, 3878
BstPI	GGTNACC	1 cut(s)	3850
BstSCI	CCNGG	3 cut(s)	443, 1406, 2676
BstSFI	CTRYAG	3 cut(s)	780, 2062, 2343
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	7 cut(s)	798, 1444, 1586, 1856, 2574, 3543, 3578
BstV2I	GAAGAC	5 cut(s)	2163, 2643, 2871, 2981, 3395
BstX2I	RGATCY	6 cut(s)	426, 1311, 2263, 2673, 2938, 4003
BstYI	RGATCY	6 cut(s)	426, 1311, 2263, 2673, 2938, 4003
BstZ17I	GTATAC	1 cut(s)	3332
BsuI	GTATCC	2 cut(s)	1020, 2311
BsuRI	GGCC	9 cut(s)	492, 605, 1082, 1265, 1607, 1671, 2722, 2801, 3374
BtgI	CCRYGG	1 cut(s)	3094
BtgZI	GCGATG	1 cut(s)	1556
BtrI	CACGTC	1 cut(s)	2869
BtsI	GCAGTG	3 cut(s)	1304, 3498, 3888
BtsIMutI	CAGTG	7 cut(s)	903, 1304, 1693, 2474, 3442, 3498, 3888
BveI	ACCTGC	1 cut(s)	1726
Cac8I	GCNNGC	4 cut(s)	775, 1233, 3543, 3876
CaiI	CAGNNNCTG	2 cut(s)	523, 4091
CfoI	GCGC	2 cut(s)	8, 71
Cfr13I	GGNCC	8 cut(s)	537, 603, 838, 1264, 1771, 2682, 2720, 3372
CseI	GACGC	1 cut(s)	684
Csp6I	GTAC	6 cut(s)	347, 1384, 2207, 2340, 2361, 3503
CspCI	CAANNNNNGTGG	2 cut(s)	1189, 1224
CviQI	GTAC	6 cut(s)	347, 1384, 2207, 2340, 2361, 3503
DraI	TTTAAA	2 cut(s)	283, 1831
DraIII	CACNNNGTG	1 cut(s)	1129
DriI	GACNNNNNGTC	2 cut(s)	664, 2872
EaeI	YGGCCR	2 cut(s)	490, 1605
Eam1104I	CTCTTC	7 cut(s)	93, 275, 1170, 1899, 2149, 2892, 4133
Eam1105I	GACNNNNNGTC	2 cut(s)	664, 2872
EarI	CTCTTC	7 cut(s)	93, 275, 1170, 1899, 2149, 2892, 4133
Ecl136II	GAGCTC	4 cut(s)	529, 777, 1195, 1684
Eco130I	CCWWGG	2 cut(s)	540, 3094
Eco147I	AGGCCT	1 cut(s)	1671
Eco24I	GRGCYC	5 cut(s)	531, 779, 1197, 1686, 1911
Eco32I	GATATC	1 cut(s)	46
Eco47I	GGWCC	4 cut(s)	537, 838, 1771, 2682
Eco53kI	GAGCTC	4 cut(s)	529, 777, 1195, 1684
Eco57I	CTGAAG	3 cut(s)	2873, 3886, 4157
Eco91I	GGTNACC	1 cut(s)	3850
EcoICRI	GAGCTC	4 cut(s)	529, 777, 1195, 1684
EcoO109I	RGGNCCY	2 cut(s)	838, 2682
EcoO65I	GGTNACC	1 cut(s)	3850
EcoRI	GAATTC	1 cut(s)	1984
EcoRII	CCWGG	1 cut(s)	2676
EcoRV	GATATC	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	540, 3094
EcoT22I	ATGCAT	3 cut(s)	2532, 3791, 4030
EcoT38I	GRGCYC	5 cut(s)	531, 779, 1197, 1686, 1911
ErhI	CCWWGG	2 cut(s)	540, 3094
Esp3I	CGTCTC	1 cut(s)	172
FaqI	GGGAC	6 cut(s)	558, 590, 814, 864, 2581, 2668
FauI	CCCGC	1 cut(s)	143
FbaI	TGATCA	2 cut(s)	552, 4111
FblI	GTMKAC	3 cut(s)	618, 2540, 3331
Fnu4HI	GCNGC	9 cut(s)	487, 490, 812, 1458, 1575, 1870, 2563, 3557, 3567
FriOI	GRGCYC	5 cut(s)	531, 779, 1197, 1686, 1911
Fsp4HI	GCNGC	9 cut(s)	487, 490, 812, 1458, 1575, 1870, 2563, 3557, 3567
GlaI	GCGC	2 cut(s)	7, 70
GluI	GCNGC	9 cut(s)	487, 490, 812, 1458, 1575, 1870, 2563, 3557, 3567
GsuI	CTGGAG	3 cut(s)	545, 2314, 3249
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	9 cut(s)	492, 605, 1082, 1265, 1607, 1671, 2722, 2801, 3374
HapII	CCGG	5 cut(s)	445, 1031, 1408, 4049, 4070
HgaI	GACGC	1 cut(s)	684
HhaI	GCGC	2 cut(s)	8, 71
Hin1I	GRCGYC	1 cut(s)	695
Hin6I	GCGC	2 cut(s)	6, 69
HinP1I	GCGC	2 cut(s)	6, 69
HincII	GTYRAC	3 cut(s)	820, 3361, 4147
HindII	GTYRAC	3 cut(s)	820, 3361, 4147
HindIII	AAGCTT	5 cut(s)	1757, 1893, 2517, 3602, 3659
HpaI	GTTAAC	1 cut(s)	820
HpaII	CCGG	5 cut(s)	445, 1031, 1408, 4049, 4070
Hpy166II	GTNNAC	7 cut(s)	619, 820, 2541, 3332, 3361, 3629, 4147
Hpy8I	GTNNAC	7 cut(s)	619, 820, 2541, 3332, 3361, 3629, 4147
Hpy99I	CGWCG	3 cut(s)	476, 670, 700
HpyCH4IV	ACGT	2 cut(s)	345, 2868
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1583, 3547, 3556, 3880
HpySE526I	ACGT	2 cut(s)	345, 2868
Hsp92I	GRCGYC	1 cut(s)	695
HspAI	GCGC	2 cut(s)	6, 69
KflI	GGGWCCC	1 cut(s)	2682
Ksp22I	TGATCA	2 cut(s)	552, 4111
KspAI	GTTAAC	1 cut(s)	820
LguI	GCTCTTC	2 cut(s)	1899, 2149
Lsp1109I	GCAGC	7 cut(s)	798, 1444, 1586, 1856, 2574, 3543, 3578
MaeII	ACGT	2 cut(s)	345, 2868
MaeIII	GTNAC	9 cut(s)	1468, 1944, 3041, 3163, 3234, 3670, 3850, 3965, 4044
MbiI	CCGCTC	2 cut(s)	138, 1094
MfeI	CAATTG	3 cut(s)	532, 680, 3080
MflI	RGATCY	6 cut(s)	426, 1311, 2263, 2673, 2938, 4003
MhlI	GDGCHC	6 cut(s)	513, 531, 779, 1197, 1686, 1911
MlyI	GAGTC	8 cut(s)	32, 404, 1175, 2048, 3958, 4001, 4152, 4157
MmeI	TCCRAC	5 cut(s)	495, 1404, 2214, 2755, 3130
Mph1103I	ATGCAT	3 cut(s)	2532, 3791, 4030
MroXI	GAANNNNTTC	2 cut(s)	2041, 3392
MslI	CAYNNNNRTG	3 cut(s)	1439, 1996, 2557
MspI	CCGG	5 cut(s)	445, 1031, 1408, 4049, 4070
MspR9I	CCNGG	3 cut(s)	445, 1408, 2678
MunI	CAATTG	3 cut(s)	532, 680, 3080
Mva1269I	GAATGC	4 cut(s)	2221, 2918, 3745, 3982
MvaI	CCWGG	1 cut(s)	2678
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	4 cut(s)	1583, 3547, 3556, 3880
NciI	CCSGG	2 cut(s)	445, 1408
NcoI	CCATGG	1 cut(s)	3094
NlaIV	GGNNCC	6 cut(s)	840, 1313, 1773, 2683, 2684, 2940
NmuCI	GTSAC	5 cut(s)	3041, 3163, 3850, 3965, 4044
NsiI	ATGCAT	3 cut(s)	2532, 3791, 4030
NspI	RCATGY	6 cut(s)	818, 1403, 2001, 2325, 3554, 3878
NspV	TTCGAA	1 cut(s)	463
PaeI	GCATGC	1 cut(s)	3878
PceI	AGGCCT	1 cut(s)	1671
PciI	ACATGT	2 cut(s)	1399, 2321
PciSI	GCTCTTC	2 cut(s)	1899, 2149
PcsI	WCGNNNNNNNCGW	1 cut(s)	2252
PctI	GAATGC	4 cut(s)	2221, 2918, 3745, 3982
PdmI	GAANNNNTTC	2 cut(s)	2041, 3392
PflFI	GACNNNGTC	1 cut(s)	476
PflMI	CCANNNNNTGG	2 cut(s)	1273, 1781
PkrI	GCNGC	9 cut(s)	488, 491, 813, 1459, 1576, 1871, 2564, 3558, 3568
Ple19I	CGATCG	1 cut(s)	570
PleI	GAGTC	8 cut(s)	32, 404, 1174, 2048, 3957, 4000, 4151, 4157
PpsI	GAGTC	8 cut(s)	32, 404, 1174, 2048, 3957, 4000, 4151, 4157
Ppu21I	YACGTR	1 cut(s)	346
PpuMI	RGGWCCY	2 cut(s)	838, 2682
PscI	ACATGT	2 cut(s)	1399, 2321
PshBI	ATTAAT	1 cut(s)	4059
Psp124BI	GAGCTC	4 cut(s)	531, 779, 1197, 1686
Psp5II	RGGWCCY	2 cut(s)	838, 2682
Psp6I	CCWGG	1 cut(s)	2676
PspEI	GGTNACC	1 cut(s)	3850
PspGI	CCWGG	1 cut(s)	2676
PspN4I	GGNNCC	6 cut(s)	840, 1313, 1773, 2683, 2684, 2940
PspPI	GGNCC	8 cut(s)	537, 603, 838, 1264, 1771, 2682, 2720, 3372
PspPPI	RGGWCCY	2 cut(s)	838, 2682
PstI	CTGCAG	1 cut(s)	2347
PstNI	CAGNNNCTG	2 cut(s)	523, 4091
PsuI	RGATCY	6 cut(s)	426, 1311, 2263, 2673, 2938, 4003
PsyI	GACNNNGTC	1 cut(s)	476
PvuI	CGATCG	1 cut(s)	570
RsaI	GTAC	6 cut(s)	348, 1385, 2208, 2341, 2362, 3504
RsaNI	GTAC	6 cut(s)	347, 1384, 2207, 2340, 2361, 3503
RseI	CAYNNNNRTG	3 cut(s)	1439, 1996, 2557
SacI	GAGCTC	4 cut(s)	531, 779, 1197, 1686
SapI	GCTCTTC	2 cut(s)	1899, 2149
SatI	GCNGC	9 cut(s)	487, 490, 812, 1458, 1575, 1870, 2563, 3557, 3567
Sau96I	GGNCC	8 cut(s)	537, 603, 838, 1264, 1771, 2682, 2720, 3372
ScaI	AGTACT	4 cut(s)	2208, 2341, 2362, 3504
SchI	GAGTC	8 cut(s)	32, 404, 1175, 2048, 3958, 4001, 4152, 4157
ScrFI	CCNGG	3 cut(s)	445, 1408, 2678
SduI	GDGCHC	6 cut(s)	513, 531, 779, 1197, 1686, 1911
SfcI	CTRYAG	3 cut(s)	780, 2062, 2343
SfuI	TTCGAA	1 cut(s)	463
SinI	GGWCC	4 cut(s)	537, 838, 1771, 2682
SmiMI	CAYNNNNRTG	3 cut(s)	1439, 1996, 2557
SmlI	CTYRAG	5 cut(s)	308, 451, 1508, 3213, 3647
SmoI	CTYRAG	5 cut(s)	308, 451, 1508, 3213, 3647
SphI	GCATGC	1 cut(s)	3878
SseBI	AGGCCT	1 cut(s)	1671
SsiI	CCGC	6 cut(s)	52, 136, 486, 489, 1094, 2178
SspI	AATATT	1 cut(s)	2107
SstI	GAGCTC	4 cut(s)	531, 779, 1197, 1686
StuI	AGGCCT	1 cut(s)	1671
StyD4I	CCNGG	3 cut(s)	443, 1406, 2676
StyI	CCWWGG	2 cut(s)	540, 3094
TaiI	ACGT	2 cut(s)	348, 2871
TatI	WGTACW	4 cut(s)	2206, 2339, 2360, 3502
TauI	GCSGC	2 cut(s)	489, 492
TscAI	CASTG	7 cut(s)	910, 1304, 1693, 2481, 3442, 3498, 3895
TseFI	GTSAC	5 cut(s)	3041, 3163, 3850, 3965, 4044
TseI	GCWGC	7 cut(s)	811, 1457, 1574, 1869, 2562, 3556, 3566
Tsp45I	GTSAC	5 cut(s)	3041, 3163, 3850, 3965, 4044
TspGWI	ACGGA	2 cut(s)	1371, 2443
TspRI	CASTG	7 cut(s)	910, 1304, 1693, 2481, 3442, 3498, 3895
Tth111I	GACNNNGTC	1 cut(s)	476
Van91I	CCANNNNNTGG	2 cut(s)	1273, 1781
VpaK11BI	GGWCC	4 cut(s)	537, 838, 1771, 2682
VspI	ATTAAT	1 cut(s)	4059
XapI	RAATTY	6 cut(s)	1304, 1984, 2041, 2570, 3322, 3862
XbaI	TCTAGA	1 cut(s)	2927
XceI	RCATGY	6 cut(s)	818, 1403, 2001, 2325, 3554, 3878
XmiI	GTMKAC	3 cut(s)	618, 2540, 3331
XmnI	GAANNNNTTC	2 cut(s)	2041, 3392
ZrmI	AGTACT	4 cut(s)	2208, 2341, 2362, 3504
Zsp2I	ATGCAT	3 cut(s)	2532, 3791, 4030

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.