Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011236.1

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Reverse (-)

37337 .. 39789

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011236.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

atgttccagttcaatctttgctctctgagccgctgtcacttgcccactctctccacaaagccgaaacccgatattccaatccacagcatcaacgttgcttcaaaacgacgccgcttcggcgtccgaaacaactcgcgccggttcttcttttcgccggaaaacgcccatgctactccggtggcggcggccgtcaattggtggagcctaaccgaggaggaggaggaggaggaggaggagaaagagcaaatcacggcggcgaagccagtcacgattctgcgtgctgttcatcgaatgtggaatttgatcgagactgatagatggattgtgtttgttgcttttggttcactgattatagcagcgctttccgagatctcaataccgcggatattgacggagtctgtgttttgtgctcaaaatggggatgctgcggtgttcttcaggaactcgaagcttctagcagtgttgtgtatcacttcagggatatgcagcggcctgcgaagtggttgttttgggattgcaaacattttgttggttaagcgcctcagggaaaccctatactcagttgttcttgtccaggatatatcctttttcgacagagaatcagttggtgatttgacaagcagacttggggcagattgtcaacgattatcacttgtcattgcaaatgatattaacttgatattacgtaatgggcttcagggaactggtgcactgatcaatctgcttatattatcttggcctcttgcattatcagcactggttatatgtggtgttttatctgtgatttttcttctttatagcaagtaccaaaagaaagctgcaaaattaacccaagacttcactgctggggccaatgaagttgcacaagagacactttctctgatgagaacagtccgggtttttggaacagaaagaaaagaaattggaaggttcaagggatggctagacaaggtagcgtttataaacattcgagagagtatggctcgtgggttcttgagtatgagttttcataccctgtatcggtcaacacaggttattgctgtggtggtaggaggcatttctattatgagtggtcgtgtatcacctgagcaactaactaagtacgtattgtactgtgagtggttaatttatgcaactgggagggtcatagacaatttatcatcattagtcgagtctgttggagcaagtgaaaaggttctccagttgatggacttgttgcccagcgaccaattcgtatcaaaaggtaggcactcttatcctgtgaaggagaagcgcattcgttcttttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04142 map02010 map04142

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

430

Amino Acids

48.11

Weight (kDa)

9.18

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	962
AccB7I	CCANNNNNTGG	1 cut(s)	1207
AccII	CGCG	2 cut(s)	136, 382
AciI	CCGC	9 cut(s)	31, 112, 182, 185, 254, 380, 382, 428, 489
AclI	AACGTT	1 cut(s)	93
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	3 cut(s)	421, 459, 680
AcyI	GRCGYC	2 cut(s)	109, 120
AfaI	GTAC	3 cut(s)	806, 1103, 1112
AfeI	AGCGCT	1 cut(s)	360
AfiI	CCNNNNNNNGG	4 cut(s)	195, 211, 1020, 1207
AgsI	TTSAA	3 cut(s)	13, 102, 934
AjnI	CCWGG	1 cut(s)	573
AluBI	AGCT	2 cut(s)	451, 818
AluI	AGCT	2 cut(s)	451, 818
Alw21I	GWGCWC	2 cut(s)	412, 712
Alw26I	GTCTC	2 cut(s)	302, 863
Alw44I	GTGCAC	1 cut(s)	708
Aor51HI	AGCGCT	1 cut(s)	360
AoxI	GGCC	4 cut(s)	186, 490, 737, 849
ApaLI	GTGCAC	1 cut(s)	708
ApeKI	GCWGC	4 cut(s)	356, 425, 486, 818
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	1194
AspLEI	GCGC	4 cut(s)	138, 361, 540, 1275
AspS9I	GGNCC	1 cut(s)	849
AsuC2I	CCSGG	1 cut(s)	896
AsuHPI	GGTGA	2 cut(s)	620, 1074
AxyI	CCTNAGG	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	712
BauI	CACGAG	1 cut(s)	984
Bbv12I	GWGCWC	2 cut(s)	412, 712
BbvI	GCAGC	4 cut(s)	368, 412, 498, 805
BccI	CCATC	3 cut(s)	312, 933, 1201
BceAI	ACGGC	2 cut(s)	173, 267
BciT130I	CCWGG	1 cut(s)	575
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	1 cut(s)	896
BcoDI	GTCTC	2 cut(s)	302, 863
BfaI	CTAG	2 cut(s)	455, 944
BfoI	RGCGCY	2 cut(s)	362, 541
BglI	GCCNNNNNGGC	1 cut(s)	117
BglII	AGATCT	1 cut(s)	369
Bme1390I	CCNGG	2 cut(s)	575, 896
BmgT120I	GGNCC	1 cut(s)	849
BmiI	GGNNCC	2 cut(s)	203, 850
BmrFI	CCNGG	2 cut(s)	575, 896
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	2 cut(s)	96, 412
BmuI	ACTGGG	1 cut(s)	1146
BplI	GAGNNNNNCTC	2 cut(s)	967, 999
BpmI	CTGGAG	1 cut(s)	1184
Bpu10I	CCTNAGC	1 cut(s)	1086
BpuEI	CTTGAG	1 cut(s)	1015
BpuMI	CCSGG	1 cut(s)	896
BsaAI	YACGTR	2 cut(s)	686, 1105
BsaHI	GRCGYC	2 cut(s)	109, 120
BsaJI	CCNNGG	2 cut(s)	210, 380
BsaWI	WCCGGW	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bsc4I	CCNNNNNNNGG	4 cut(s)	195, 211, 1020, 1207
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	6 cut(s)	7, 263, 709, 762, 1141, 1201
Bse21I	CCTNAGG	1 cut(s)	542
Bse3DI	GCAATG	1 cut(s)	657
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	210, 380
BseGI	GGATG	2 cut(s)	427, 944
BseLI	CCNNNNNNNGG	4 cut(s)	195, 211, 1020, 1207
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	4 cut(s)	17, 556, 573, 1077
BseNI	ACTGG	6 cut(s)	7, 263, 709, 762, 1141, 1201
BseRI	GAGGAG	8 cut(s)	227, 230, 233, 236, 239, 242, 245, 248
BseSI	GKGCMC	1 cut(s)	712
BseX3I	CGGCCG	1 cut(s)	186
BseXI	GCAGC	4 cut(s)	368, 412, 498, 805
BseYI	CCCAGC	2 cut(s)	845, 1220
Bsh1236I	CGCG	2 cut(s)	136, 382
Bsh1285I	CGRYCG	1 cut(s)	189
BshFI	GGCC	4 cut(s)	188, 492, 739, 851
BsiEI	CGRYCG	1 cut(s)	189
BsiHKAI	GWGCWC	2 cut(s)	412, 712
BsiSI	CCGG	4 cut(s)	139, 155, 176, 895
BslI	CCNNNNNNNGG	4 cut(s)	195, 211, 1020, 1207
BsmAI	GTCTC	2 cut(s)	302, 863
BsmI	GAATGC	1 cut(s)	1275
BsnI	GGCC	4 cut(s)	188, 492, 739, 851
Bsp1286I	GDGCHC	2 cut(s)	412, 712
Bsp143I	GATC	3 cut(s)	303, 369, 714
BspACI	CCGC	9 cut(s)	31, 112, 182, 185, 254, 380, 382, 428, 489
BspANI	GGCC	4 cut(s)	188, 492, 739, 851
BspCNI	CTCAG	4 cut(s)	18, 555, 572, 1078
BspFNI	CGCG	2 cut(s)	136, 382
BspLI	GGNNCC	2 cut(s)	203, 850
BsrDI	GCAATG	1 cut(s)	657
BsrFI	RCCGGY	1 cut(s)	138
BsrI	ACTGG	6 cut(s)	7, 263, 709, 762, 1141, 1201
BssAI	RCCGGY	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	210, 380
BssMI	GATC	3 cut(s)	303, 369, 714
BssNI	GRCGYC	2 cut(s)	109, 120
BssSI	CACGAG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	984
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	2 cut(s)	892, 1115
BstACI	GRCGYC	2 cut(s)	109, 120
BstBAI	YACGTR	2 cut(s)	686, 1105
BstC8I	GCNNGC	2 cut(s)	279, 494
BstDEI	CTNAG	5 cut(s)	26, 542, 559, 1086, 1098
BstDSI	CCRYGG	1 cut(s)	380
BstENI	CCTNNNNNAGG	1 cut(s)	209
BstF5I	GGATG	2 cut(s)	427, 944
BstFNI	CGCG	2 cut(s)	136, 382
BstH2I	RGCGCY	2 cut(s)	362, 541
BstHHI	GCGC	4 cut(s)	138, 361, 540, 1275
BstKTI	GATC	3 cut(s)	306, 372, 717
BstMAI	GTCTC	2 cut(s)	302, 863
BstMBI	GATC	3 cut(s)	303, 369, 714
BstMCI	CGRYCG	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 117, 752
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	2 cut(s)	573, 894
BstSLI	GKGCMC	1 cut(s)	712
BstSNI	TACGTA	2 cut(s)	686, 1105
BstUI	CGCG	2 cut(s)	136, 382
BstV1I	GCAGC	4 cut(s)	368, 412, 498, 805
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BstZI	CGGCCG	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	542
BsuRI	GGCC	4 cut(s)	188, 492, 739, 851
BtgI	CCRYGG	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	427, 944
BtsI	GCAGTG	2 cut(s)	465, 840
BtsIMutI	CAGTG	5 cut(s)	344, 465, 710, 755, 840
Cac8I	GCNNGC	2 cut(s)	279, 494
CfoI	GCGC	4 cut(s)	138, 361, 540, 1275
Cfr10I	RCCGGY	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	849
Cfr42I	CCGCGG	1 cut(s)	383
CseI	GACGC	2 cut(s)	109, 117
Csp6I	GTAC	3 cut(s)	805, 1102, 1111
CviAII	CATG	1 cut(s)	167
CviQI	GTAC	3 cut(s)	805, 1102, 1111
DdeI	CTNAG	5 cut(s)	26, 542, 559, 1086, 1098
DpnI	GATC	3 cut(s)	305, 371, 716
DpnII	GATC	3 cut(s)	303, 369, 714
EaeI	YGGCCR	1 cut(s)	186
EagI	CGGCCG	1 cut(s)	186
EclXI	CGGCCG	1 cut(s)	186
Eco105I	TACGTA	2 cut(s)	686, 1105
Eco47III	AGCGCT	1 cut(s)	360
Eco52I	CGGCCG	1 cut(s)	186
Eco57I	CTGAAG	3 cut(s)	421, 459, 680
Eco81I	CCTNAGG	1 cut(s)	542
EcoNI	CCTNNNNNAGG	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	573
FaeI	CATG	1 cut(s)	170
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FatI	CATG	1 cut(s)	166
FbaI	TGATCA	1 cut(s)	714
FokI	GGATG	2 cut(s)	434, 951
FspBI	CTAG	2 cut(s)	455, 944
GlaI	GCGC	4 cut(s)	137, 360, 539, 1274
GsaI	CCCAGC	2 cut(s)	849, 1224
GsuI	CTGGAG	1 cut(s)	1184
HaeII	RGCGCY	2 cut(s)	362, 541
HaeIII	GGCC	4 cut(s)	188, 492, 739, 851
HapII	CCGG	4 cut(s)	139, 155, 176, 895
HgaI	GACGC	2 cut(s)	109, 117
HhaI	GCGC	4 cut(s)	138, 361, 540, 1275
Hin1I	GRCGYC	2 cut(s)	109, 120
Hin1II	CATG	1 cut(s)	170
Hin6I	GCGC	4 cut(s)	136, 359, 538, 1273
HinP1I	GCGC	4 cut(s)	136, 359, 538, 1273
HincII	GTYRAC	2 cut(s)	641, 1026
HindII	GTYRAC	2 cut(s)	641, 1026
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	4 cut(s)	271, 395, 599, 1172
HpaII	CCGG	4 cut(s)	139, 155, 176, 895
HphI	GGTGA	2 cut(s)	620, 1074
Hpy166II	GTNNAC	4 cut(s)	344, 641, 710, 1026
Hpy188I	TCNGA	4 cut(s)	27, 125, 367, 882
Hpy188III	TCNNGA	5 cut(s)	268, 307, 439, 971, 994
Hpy8I	GTNNAC	4 cut(s)	344, 641, 710, 1026
Hpy99I	CGWCG	1 cut(s)	111
HpyAV	CCTTC	2 cut(s)	921, 1258
HpyCH4III	ACNGT	2 cut(s)	892, 1115
HpyCH4IV	ACGT	3 cut(s)	93, 685, 1104
HpyCH4V	TGCA	8 cut(s)	486, 518, 662, 710, 746, 821, 863, 1133
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 117, 752
HpyF3I	CTNAG	5 cut(s)	26, 542, 559, 1086, 1098
HpySE526I	ACGT	3 cut(s)	93, 685, 1104
Hsp92I	GRCGYC	2 cut(s)	109, 120
Hsp92II	CATG	1 cut(s)	170
HspAI	GCGC	4 cut(s)	136, 359, 538, 1273
Ksp22I	TGATCA	1 cut(s)	714
KspI	CCGCGG	1 cut(s)	383
Kzo9I	GATC	3 cut(s)	303, 369, 714
LmnI	GCTCC	2 cut(s)	201, 1181
Lsp1109I	GCAGC	4 cut(s)	368, 412, 498, 805
LweI	GCATC	2 cut(s)	96, 412
MaeI	CTAG	2 cut(s)	455, 944
MaeII	ACGT	3 cut(s)	93, 685, 1104
MaeIII	GTNAC	2 cut(s)	35, 265
MalI	GATC	3 cut(s)	305, 371, 716
MboI	GATC	3 cut(s)	303, 369, 714
MboII	GAAGA	3 cut(s)	136, 427, 782
MfeI	CAATTG	1 cut(s)	193
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	412, 712
MluCI	AATT	7 cut(s)	193, 298, 824, 921, 1125, 1153, 1229
MlyI	GAGTC	2 cut(s)	404, 1181
MmeI	TCCRAC	1 cut(s)	1159
MroXI	GAANNNNTTC	1 cut(s)	1194
MseI	TTAA	4 cut(s)	534, 672, 827, 1124
MspA1I	CMGCKG	3 cut(s)	33, 382, 489
MspI	CCGG	4 cut(s)	139, 155, 176, 895
MspR9I	CCNGG	2 cut(s)	575, 896
MunI	CAATTG	1 cut(s)	193
Mva1269I	GAATGC	1 cut(s)	1275
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	2 cut(s)	136, 382
MwoI	GCNNNNNNNGC	3 cut(s)	27, 117, 752
NciI	CCSGG	1 cut(s)	896
NdeII	GATC	3 cut(s)	303, 369, 714
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	203, 850
NmuCI	GTSAC	2 cut(s)	35, 265
PctI	GAATGC	1 cut(s)	1275
PdmI	GAANNNNTTC	1 cut(s)	1194
PfeI	GAWTC	2 cut(s)	271, 599
PflFI	GACNNNGTC	1 cut(s)	394
PflMI	CCANNNNNTGG	1 cut(s)	1207
PfoI	TCCNGGA	1 cut(s)	573
PleI	GAGTC	2 cut(s)	403, 1180
PpsI	GAGTC	2 cut(s)	403, 1180
Ppu21I	YACGTR	2 cut(s)	686, 1105
PsiI	TTATAA	1 cut(s)	962
Psp1406I	AACGTT	1 cut(s)	93
Psp6I	CCWGG	1 cut(s)	573
PspFI	CCCAGC	2 cut(s)	845, 1220
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	203, 850
PspPI	GGNCC	1 cut(s)	849
PsuI	RGATCY	1 cut(s)	369
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	806, 1103, 1112
RsaNI	GTAC	3 cut(s)	805, 1102, 1111
SacII	CCGCGG	1 cut(s)	383
SaqAI	TTAA	4 cut(s)	534, 672, 827, 1124
Sau3AI	GATC	3 cut(s)	303, 369, 714
Sau96I	GGNCC	1 cut(s)	849
SchI	GAGTC	2 cut(s)	404, 1181
ScrFI	CCNGG	2 cut(s)	575, 896
SduI	GDGCHC	2 cut(s)	412, 712
SfaNI	GCATC	2 cut(s)	96, 412
Sfr303I	CCGCGG	1 cut(s)	383
SgrBI	CCGCGG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	994
SmoI	CTYRAG	1 cut(s)	994
SnaBI	TACGTA	2 cut(s)	686, 1105
Sse9I	AATT	7 cut(s)	193, 298, 824, 921, 1125, 1153, 1229
SsiI	CCGC	9 cut(s)	31, 112, 182, 185, 254, 380, 382, 428, 489
SspMI	CTAG	2 cut(s)	455, 944
StyD4I	CCNGG	2 cut(s)	573, 894
TaaI	ACNGT	2 cut(s)	892, 1115
TaiI	ACGT	3 cut(s)	96, 688, 1107
TaqI	TCGA	6 cut(s)	289, 306, 446, 591, 970, 1170
TaqII	GACCGA	1 cut(s)	1011
TasI	AATT	7 cut(s)	193, 298, 824, 921, 1125, 1153, 1229
TatI	WGTACW	1 cut(s)	1110
TauI	GCSGC	6 cut(s)	33, 114, 185, 188, 257, 492
TfiI	GAWTC	2 cut(s)	271, 599
Tru1I	TTAA	4 cut(s)	534, 672, 827, 1124
Tru9I	TTAA	4 cut(s)	534, 672, 827, 1124
TscAI	CASTG	5 cut(s)	351, 465, 717, 762, 847
TseFI	GTSAC	2 cut(s)	35, 265
TseI	GCWGC	4 cut(s)	356, 425, 486, 818
Tsp45I	GTSAC	2 cut(s)	35, 265
TspDTI	ATGAA	3 cut(s)	275, 870, 998
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	5 cut(s)	351, 465, 717, 762, 847
Tth111I	GACNNNGTC	1 cut(s)	394
Van91I	CCANNNNNTGG	1 cut(s)	1207
VneI	GTGCAC	1 cut(s)	708
XagI	CCTNNNNNAGG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	1194
XspI	CTAG	2 cut(s)	455, 944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.