Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Reverse (-)

43567023 .. 43568511

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTGACAGGATGCGAGTTGAGTATGATGAATATAAGAAATCTAAGGAAATACAGCTGATAGATTTAGAGCGTTCGTTGGATGAGCTAGAGAAGAGTTTGTCTGATGAGTCAGGAGACAATAAGTTGTACAAAAGTTGCGTAGAGATGGAGAAGAGACTAGAAAATCTTTATGTTTTCTGTCAGGCTATTTGGCTGATCTGGTTGGCTTTGGTGTGGCAGTTGCAACTGGCTTGCAATTTATTGAGAATTTTCCTGAGCGGACATATAAACCGATGCTCATTCATATTGTGCAAGAAGATGCATGGGAGAGCAGGTGAAACTTCTAAAGGAGGGTTCTATGTTTATGATGATAAACGCAAAGCTGGCCCAGATCCTGAATTGAAAAATTACATTGAAAAAAGTGGTGTTTCCATAGACTCAAGGTCTCTCTCTCTCTCTGCATTTGTAACAAGTGATAACTTTATGGATGATAATTGTTCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04142 map02010 map04142

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

162

Amino Acids

18.85

Weight (kDa)

5.35

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	305
Acc36I	ACCTGC	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	249
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	385, 398
AhdI	GACNNNNNGTC	1 cut(s)	424
AluBI	AGCT	3 cut(s)	58, 88, 365
AluI	AGCT	3 cut(s)	58, 88, 365
Alw26I	GTCTC	3 cut(s)	111, 151, 432
AlwI	GGATC	1 cut(s)	368
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	368
AsuHPI	GGTGA	1 cut(s)	329
BccI	CCATC	1 cut(s)	142
BcoDI	GTCTC	3 cut(s)	111, 151, 432
BfaI	CTAG	2 cut(s)	89, 161
BfuAI	ACCTGC	1 cut(s)	305
BmeRI	GACNNNNNGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	368
BmsI	GCATC	3 cut(s)	3, 266, 291
Bpu10I	CCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	406
BsaI	GGTCTC	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	301, 331
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	18, 88, 475
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	369
BsmAI	GTCTC	3 cut(s)	111, 151, 432
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	432
Bsp1407I	TGTACA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	198, 373
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	305
BspPI	GGATC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	432
BsrBI	CCGCTC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	234
BssMI	GATC	2 cut(s)	198, 373
Bst6I	CTCTTC	2 cut(s)	89, 149
BstAUI	TGTACA	1 cut(s)	129
BstC8I	GCNNGC	2 cut(s)	235, 367
BstDEI	CTNAG	2 cut(s)	45, 257
BstF5I	GGATG	3 cut(s)	18, 88, 475
BstKTI	GATC	2 cut(s)	201, 376
BstMAI	GTCTC	3 cut(s)	111, 151, 432
BstMBI	GATC	2 cut(s)	198, 373
BstMWI	GCNNNNNNNGC	1 cut(s)	366
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	18, 88, 475
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	235, 367
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	1 cut(s)	305
CviJI	RGCY	8 cut(s)	58, 88, 188, 196, 209, 233, 365, 369
CviKI_1	RGCY	8 cut(s)	58, 88, 188, 196, 209, 233, 365, 369
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	2 cut(s)	45, 257
DpnI	GATC	2 cut(s)	200, 375
DpnII	GATC	2 cut(s)	198, 373
DriI	GACNNNNNGTC	1 cut(s)	424
Eam1104I	CTCTTC	2 cut(s)	89, 149
Eam1105I	GACNNNNNGTC	1 cut(s)	424
EarI	CTCTTC	2 cut(s)	89, 149
Eco31I	GGTCTC	1 cut(s)	432
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	1 cut(s)	308
FatI	CATG	1 cut(s)	304
FokI	GGATG	3 cut(s)	25, 95, 482
FspBI	CTAG	2 cut(s)	89, 161
HaeIII	GGCC	1 cut(s)	369
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	2 cut(s)	110, 419
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	2 cut(s)	106, 484
Hpy188III	TCNNGA	3 cut(s)	114, 256, 377
HpyCH4V	TGCA	5 cut(s)	226, 237, 294, 304, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	366
HpyF3I	CTNAG	2 cut(s)	45, 257
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	198, 373
LpnPI	CCDG	9 cut(s)	99, 170, 187, 215, 269, 300, 351, 384, 390
LweI	GCATC	3 cut(s)	3, 266, 291
MaeI	CTAG	2 cut(s)	89, 161
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	2 cut(s)	200, 375
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	2 cut(s)	198, 373
MboII	GAAGA	3 cut(s)	106, 166, 310
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	5 cut(s)	238, 249, 380, 388, 475
MlyI	GAGTC	2 cut(s)	119, 413
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	1 cut(s)	326
Mph1103I	ATGCAT	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	366
NdeII	GATC	2 cut(s)	198, 373
NlaIII	CATG	1 cut(s)	308
NsiI	ATGCAT	1 cut(s)	306
PaqCI	CACCTGC	1 cut(s)	305
PleI	GAGTC	2 cut(s)	118, 413
PpsI	GAGTC	2 cut(s)	118, 413
PspPI	GGNCC	1 cut(s)	368
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
Sau3AI	GATC	2 cut(s)	198, 373
Sau96I	GGNCC	1 cut(s)	368
SchI	GAGTC	2 cut(s)	119, 413
SetI	ASST	5 cut(s)	60, 90, 319, 367, 428
SfaNI	GCATC	3 cut(s)	3, 266, 291
SmlI	CTYRAG	1 cut(s)	421
SmoI	CTYRAG	1 cut(s)	421
Sse9I	AATT	5 cut(s)	238, 249, 380, 388, 475
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	89, 161
TasI	AATT	5 cut(s)	238, 249, 380, 388, 475
TatI	WGTACW	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	45, 274
XapI	RAATTY	1 cut(s)	249
XspI	CTAG	2 cut(s)	89, 161
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.