Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Reverse (-)

43553294 .. 43555692

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0264000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGCGCATAGACTTTCTGATCAGTCTTTTTCACAACAAGAAATGCTTTCCATTATGCTCAACCCAGACCCACATTGTTAAACATTATAAGTTCTTGAACCCACATTGTATAATCAACAAAGAAACTCTCTCTCTCTCTCTCTCTCTCTCTGGCGAAGACCAAGCAAGAACGAGATCGGACTGGCTACTACTCCATATTGTTTCTCTAGATATGGAAACTTTAAGTTTCTATATCGGAGTTATTGGCAACCTCATTTCAGTGCTAATGTTTCTTGCTCCTGTGTATACATTTTCGAGAATCATAAAGAACCGTTCGACAGAAGAGTTCAGCAGTCTTCCCTACGTCTGCACATTCCTCAACTGCTTCCTGTGGACTTACTACGGAATCATAAAGCCCGGAGCTTATCTTGTATCCACCATCAATGGCTTCGGAATTCTTGTCGAGATCATCTATCTCTCTTTGTTTCTAACATACGCCACAGCAAACAAGAGGGTGAACACGGCGATCTGGATTGGTATCTTGGATGTGGGTTTTCCGGCAGCGGCCATGTTAGTGACTTGGCTGGCGTTGAAGGGAGATGTACGTATTAATGCAATAGGGTTCTTGAGTGCTGGCCTCAATATCATCATGTACGCCTCACCTCTAGCTGCAATGAAAACAGTGGTGACAACTAAGAGTGTGGAGTACATGCCATTTTGGCTATCATTCTTCTTTTTCCTCAACGGAGGGGTCTGGCTTTTTTATTCTTGGCTTGAACAAGATTATTTTCTTGGGGTACCAAATGGGATGGGGTTTTTACTCGGAACAGTGCAGCTCGTGCTATATTGCATTTACACAAAACCAGCCAAGAAGGAAGACAAAAGCTTATCAAGTGCACTACTGGTGGAAGAAGGAAGAGAACATGAACCTCTTAACTCATCAGATACTACTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04142 map02010 map04142

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

311

Amino Acids

35.13

Weight (kDa)

7.6

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	76 - 161	7.4e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	198 - 281	3.1e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	87
Acc16I	TGCGCA	1 cut(s)	5
Acc65I	GGTACC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	775
AccI	GTMKAC	1 cut(s)	284
AciI	CCGC	1 cut(s)	542
AcoI	YGGCCR	1 cut(s)	543
AcsI	RAATTY	1 cut(s)	432
AfaI	GTAC	4 cut(s)	582, 632, 686, 777
AgsI	TTSAA	3 cut(s)	97, 571, 755
AluBI	AGCT	4 cut(s)	401, 647, 814, 864
AluI	AGCT	4 cut(s)	401, 647, 814, 864
Alw21I	GWGCWC	1 cut(s)	877
Alw44I	GTGCAC	1 cut(s)	873
AoxI	GGCC	2 cut(s)	543, 613
ApaLI	GTGCAC	1 cut(s)	873
ApeKI	GCWGC	3 cut(s)	539, 647, 811
ApoI	RAATTY	1 cut(s)	432
AseI	ATTAAT	1 cut(s)	588
Asp718I	GGTACC	1 cut(s)	775
AspLEI	GCGC	1 cut(s)	6
AsuC2I	CCSGG	1 cut(s)	396
AsuHPI	GGTGA	3 cut(s)	505, 630, 676
BaeGI	GKGCMC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	815
BbsI	GAAGAC	3 cut(s)	162, 326, 861
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	3 cut(s)	551, 634, 823
BccI	CCATC	2 cut(s)	425, 781
BceAI	ACGGC	1 cut(s)	516
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	18
BcnI	CCSGG	1 cut(s)	396
BfaI	CTAG	2 cut(s)	206, 644
BfuI	GTATCC	1 cut(s)	421
BglI	GCCNNNNNGGC	1 cut(s)	697
BisI	GCNGC	4 cut(s)	540, 543, 648, 812
BlsI	GCNGC	4 cut(s)	541, 544, 649, 813
Bme1390I	CCNGG	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	777
BmrFI	CCNGG	1 cut(s)	396
BpiI	GAAGAC	3 cut(s)	162, 326, 861
BpuEI	CTTGAG	1 cut(s)	625
BpuMI	CCSGG	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	515
Bse1I	ACTGG	2 cut(s)	185, 885
Bse3DI	GCAATG	1 cut(s)	657
Bse8I	GATNNNNATC	1 cut(s)	515
BseGI	GGATG	2 cut(s)	529, 792
BseJI	GATNNNNATC	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	185, 885
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	3 cut(s)	551, 634, 823
BsgI	GTGCAG	2 cut(s)	331, 830
BshFI	GGCC	2 cut(s)	545, 615
BshNI	GGYRCC	1 cut(s)	775
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	2 cut(s)	396, 536
BsnI	GGCC	2 cut(s)	545, 615
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	4 cut(s)	18, 173, 444, 504
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	2 cut(s)	545, 615
BspLI	GGNNCC	1 cut(s)	777
BspT107I	GGYRCC	1 cut(s)	775
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	2 cut(s)	185, 885
BssMI	GATC	4 cut(s)	18, 173, 444, 504
BssNAI	GTATAC	1 cut(s)	285
BssSI	CACGAG	1 cut(s)	815
Bst1107I	GTATAC	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	815
Bst4CI	ACNGT	3 cut(s)	311, 661, 808
Bst6I	CTCTTC	2 cut(s)	315, 889
BstAPI	GCANNNNNTGC	1 cut(s)	817
BstBAI	YACGTR	1 cut(s)	584
BstC8I	GCNNGC	2 cut(s)	564, 613
BstDEI	CTNAG	1 cut(s)	672
BstF5I	GGATG	2 cut(s)	529, 792
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	4 cut(s)	21, 176, 447, 507
BstMBI	GATC	4 cut(s)	18, 173, 444, 504
BstMWI	GCNNNNNNNGC	2 cut(s)	697, 817
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	877
BstSNI	TACGTA	1 cut(s)	584
BstV1I	GCAGC	3 cut(s)	551, 634, 823
BstV2I	GAAGAC	3 cut(s)	162, 326, 861
BstZ17I	GTATAC	1 cut(s)	285
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	545, 615
BtsCI	GGATG	2 cut(s)	529, 792
BtsIMutI	CAGTG	3 cut(s)	264, 666, 813
Cac8I	GCNNGC	2 cut(s)	564, 613
CfoI	GCGC	1 cut(s)	6
Csp6I	GTAC	4 cut(s)	581, 631, 685, 776
CviAII	CATG	4 cut(s)	547, 628, 688, 902
CviQI	GTAC	4 cut(s)	581, 631, 685, 776
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	4 cut(s)	20, 175, 446, 506
DpnII	GATC	4 cut(s)	18, 173, 444, 504
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	2 cut(s)	315, 889
EarI	CTCTTC	2 cut(s)	315, 889
Eco105I	TACGTA	1 cut(s)	584
EcoRI	GAATTC	1 cut(s)	432
FaeI	CATG	4 cut(s)	550, 631, 691, 905
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FatI	CATG	4 cut(s)	546, 627, 687, 901
FbaI	TGATCA	1 cut(s)	18
FblI	GTMKAC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	540, 543, 648, 812
FokI	GGATG	2 cut(s)	536, 799
Fsp4HI	GCNGC	4 cut(s)	540, 543, 648, 812
FspAI	RTGCGCAY	1 cut(s)	5
FspBI	CTAG	2 cut(s)	206, 644
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	540, 543, 648, 812
HaeIII	GGCC	2 cut(s)	545, 615
HapII	CCGG	2 cut(s)	396, 536
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	4 cut(s)	550, 631, 691, 905
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	862
HinfI	GANTC	2 cut(s)	297, 384
HpaII	CCGG	2 cut(s)	396, 536
HphI	GGTGA	3 cut(s)	505, 630, 676
Hpy166II	GTNNAC	4 cut(s)	285, 372, 496, 875
Hpy188I	TCNGA	6 cut(s)	18, 178, 236, 431, 803, 922
Hpy188III	TCNNGA	6 cut(s)	94, 206, 294, 442, 508, 604
Hpy8I	GTNNAC	4 cut(s)	285, 372, 496, 875
HpyAV	CCTTC	3 cut(s)	565, 844, 884
HpyCH4III	ACNGT	3 cut(s)	311, 661, 808
HpyCH4IV	ACGT	2 cut(s)	342, 583
HpyCH4V	TGCA	6 cut(s)	348, 593, 650, 811, 828, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	697, 817
HpyF3I	CTNAG	1 cut(s)	672
HpySE526I	ACGT	2 cut(s)	342, 583
Hsp92II	CATG	4 cut(s)	550, 631, 691, 905
HspAI	GCGC	1 cut(s)	4
KpnI	GGTACC	1 cut(s)	779
Ksp22I	TGATCA	1 cut(s)	18
Kzo9I	GATC	4 cut(s)	18, 173, 444, 504
LmnI	GCTCC	2 cut(s)	280, 398
Lsp1109I	GCAGC	3 cut(s)	551, 634, 823
MaeI	CTAG	2 cut(s)	206, 644
MaeII	ACGT	2 cut(s)	342, 583
MaeIII	GTNAC	2 cut(s)	553, 664
MalI	GATC	4 cut(s)	20, 175, 446, 506
MboI	GATC	4 cut(s)	18, 173, 444, 504
MboII	GAAGA	7 cut(s)	167, 326, 332, 700, 866, 899, 906
MhlI	GDGCHC	1 cut(s)	877
MluCI	AATT	1 cut(s)	432
MnlI	CCTC	9 cut(s)	260, 365, 483, 626, 646, 651, 719, 728, 918
MseI	TTAA	5 cut(s)	78, 221, 588, 912, 934
MslI	CAYNNNNRTG	2 cut(s)	257, 551
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	2 cut(s)	396, 536
MspR9I	CCNGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	697, 817
NciI	CCSGG	1 cut(s)	396
NdeII	GATC	4 cut(s)	18, 173, 444, 504
NlaIII	CATG	4 cut(s)	550, 631, 691, 905
NlaIV	GGNNCC	1 cut(s)	777
NmuCI	GTSAC	2 cut(s)	553, 664
NsbI	TGCGCA	1 cut(s)	5
NspI	RCATGY	1 cut(s)	691
PfeI	GAWTC	2 cut(s)	297, 384
PkrI	GCNGC	4 cut(s)	541, 544, 649, 813
Ppu21I	YACGTR	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	588
PsiI	TTATAA	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	777
RsaI	GTAC	4 cut(s)	582, 632, 686, 777
RsaNI	GTAC	4 cut(s)	581, 631, 685, 776
RseI	CAYNNNNRTG	2 cut(s)	257, 551
SaqAI	TTAA	5 cut(s)	78, 221, 588, 912, 934
SatI	GCNGC	4 cut(s)	540, 543, 648, 812
Sau3AI	GATC	4 cut(s)	18, 173, 444, 504
ScrFI	CCNGG	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	877
SetI	ASST	9 cut(s)	252, 345, 403, 586, 643, 649, 816, 866, 910
SmiMI	CAYNNNNRTG	2 cut(s)	257, 551
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
SnaBI	TACGTA	1 cut(s)	584
Sse9I	AATT	1 cut(s)	432
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	2 cut(s)	206, 644
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	311, 661, 808
TaiI	ACGT	2 cut(s)	345, 586
TaqI	TCGA	3 cut(s)	293, 314, 441
TasI	AATT	1 cut(s)	432
TatI	WGTACW	1 cut(s)	684
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	2 cut(s)	297, 384
Tru1I	TTAA	5 cut(s)	78, 221, 588, 912, 934
Tru9I	TTAA	5 cut(s)	78, 221, 588, 912, 934
TscAI	CASTG	3 cut(s)	264, 666, 813
TseFI	GTSAC	2 cut(s)	553, 664
TseI	GCWGC	3 cut(s)	539, 647, 811
Tsp45I	GTSAC	2 cut(s)	553, 664
TspDTI	ATGAA	2 cut(s)	668, 918
TspGWI	ACGGA	2 cut(s)	396, 738
TspRI	CASTG	3 cut(s)	264, 666, 813
VneI	GTGCAC	1 cut(s)	873
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	432
XbaI	TCTAGA	1 cut(s)	205
XceI	RCATGY	1 cut(s)	691
XmiI	GTMKAC	1 cut(s)	284
XspI	CTAG	2 cut(s)	206, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.