Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Forward (+)

60083286 .. 60085582

Gene Structure 2297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG341400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGTCTATTCTATCTGGTCATATTACAGCAGAGAAACTGACGAAGTTTATATTGTATAGTGAGTGGTTAATTTATGCAACATGGTGGGTGGGTGACAATTTATCCAATCTGATGCAATCTGTTGGGGCAAGTGAAAAAGTCTTCCAATTAATGGATCTCATGCCCAGTGACCAATTTATATCAAAAGGATCAAAGTTGCAAAATCTGGTTGGAAATGTTGAGTTTGTAAACACTTCTTTCTATTATCCATCGAGGCCAACGGTCCCTGTACTGCAAAATATCAGCTTATCCGTGAAACCTAATGAAGTGGTTGCTGTTGTTGGTCTTAGTGGTAGTGGAAAGAGCACACTTGTGAATCTTTTGCTCCGTCTCTATGAGCCAACAAATGGTCAGATTTTGATTGACGGCTGCCCTCTACAAGAGTTGGACGTCATGTGGTGGAGGGAAAGAATCGGATTTGTTGGACAGGAACCCAAACTGTTTCGCACAGACATTAGTTCAAACATTAGATATGGATGCACTAGAGATATCAGGCAGGAGGATGTTGAATGGGCTGCCAAGCAGGCATATGCACACGATTTCATTTTATCACTGCCCAAAGGTTATCAAACACTAGTTGATGATGATTTACTCAGTGGGGGGCAAAAGCAAAGAATTGCCATTGCGAGGGCCATTCTTAGGGACCCAACTATTTTGATCCTTGATGAAGCAACTAGTGCACTGGATGCAGAGAGTGAACACAATGTCAGGGGTGTTCTTCGTGCTGTCAGAAAAGACAAGACAACAAGGAGAAGTGTCATAATAATTGCTCACAGGCTTTCCACCATACAAGCTGCTGACCGGATAGTGGTCATGGATAATGGTAGAATTGTTGAGGCCGGCAGTCACAGTGAGCTGCTCGTTAAGGATGGCCTCTATGCACGACTAACTAGAAGACAAGCTGATGCAGTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02010 ko04142 map02010 map04142

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

318

Amino Acids

35.56

Weight (kDa)

6.98

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	91 - 239	2.9e-33	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	432
AccB7I	CCANNNNNTGG	2 cut(s)	151, 386
AclWI	GGATC	3 cut(s)	162, 196, 691
AcyI	GRCGYC	1 cut(s)	429
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	5 cut(s)	151, 386, 666, 678, 847
AgsI	TTSAA	2 cut(s)	501, 548
AhlI	ACTAGT	2 cut(s)	613, 713
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	4 cut(s)	285, 833, 895, 941
AluI	AGCT	4 cut(s)	285, 833, 895, 941
Alw21I	GWGCWC	2 cut(s)	347, 721
Alw26I	GTCTC	1 cut(s)	374
Alw44I	GTGCAC	1 cut(s)	717
AlwI	GGATC	3 cut(s)	162, 196, 691
AoxI	GGCC	4 cut(s)	254, 669, 876, 910
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	4 cut(s)	408, 554, 833, 895
AseI	ATTAAT	1 cut(s)	149
AspS9I	GGNCC	3 cut(s)	262, 669, 682
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	262, 682
BaeGI	GKGCMC	1 cut(s)	721
BbsI	GAAGAC	2 cut(s)	133, 940
Bbv12I	GWGCWC	2 cut(s)	347, 721
BbvI	GCAGC	4 cut(s)	395, 541, 820, 882
BccI	CCATC	2 cut(s)	256, 902
BceAI	ACGGC	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	374
BcuI	ACTAGT	2 cut(s)	613, 713
BfaI	CTAG	4 cut(s)	522, 614, 714, 930
BglI	GCCNNNNNGGC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	409, 555, 834, 896
BlsI	GCNGC	4 cut(s)	410, 556, 835, 897
Bme18I	GGWCC	2 cut(s)	262, 682
BmgT120I	GGNCC	3 cut(s)	262, 669, 682
BmiI	GGNNCC	4 cut(s)	264, 471, 683, 684
BmrI	ACTGGG	1 cut(s)	159
BmsI	GCATC	4 cut(s)	102, 506, 715, 934
BmuI	ACTGGG	1 cut(s)	159
BpiI	GAAGAC	2 cut(s)	133, 940
BsaHI	GRCGYC	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	840
Bsc4I	CCNNNNNNNGG	5 cut(s)	151, 386, 666, 678, 847
Bse118I	RCCGGY	1 cut(s)	878
Bse1I	ACTGG	2 cut(s)	165, 726
Bse3DI	GCAATG	1 cut(s)	660
BseGI	GGATG	4 cut(s)	521, 547, 730, 913
BseLI	CCNNNNNNNGG	5 cut(s)	151, 386, 666, 678, 847
BseMI	GCAATG	1 cut(s)	660
BseMII	CTCAG	1 cut(s)	646
BseNI	ACTGG	2 cut(s)	165, 726
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	4 cut(s)	395, 541, 820, 882
BshFI	GGCC	4 cut(s)	256, 671, 878, 912
BsiHKAI	GWGCWC	2 cut(s)	347, 721
BsiSI	CCGG	2 cut(s)	841, 879
BslFI	GGGAC	2 cut(s)	248, 695
BslI	CCNNNNNNNGG	5 cut(s)	151, 386, 666, 678, 847
BsmAI	GTCTC	1 cut(s)	374
BsmBI	CGTCTC	1 cut(s)	374
BsmFI	GGGAC	2 cut(s)	248, 695
BsnI	GGCC	4 cut(s)	256, 671, 878, 912
Bsp1286I	GDGCHC	2 cut(s)	347, 721
Bsp143I	GATC	3 cut(s)	154, 188, 696
BspANI	GGCC	4 cut(s)	256, 671, 878, 912
BspCNI	CTCAG	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	264, 471, 683, 684
BspPI	GGATC	3 cut(s)	162, 196, 691
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	878
BsrI	ACTGG	2 cut(s)	165, 726
BssAI	RCCGGY	1 cut(s)	878
BssMI	GATC	3 cut(s)	154, 188, 696
BssNI	GRCGYC	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	262, 480, 890
BstACI	GRCGYC	1 cut(s)	429
BstAPI	GCANNNNNTGC	2 cut(s)	716, 725
BstC8I	GCNNGC	2 cut(s)	564, 880
BstDEI	CTNAG	3 cut(s)	326, 632, 677
BstF5I	GGATG	4 cut(s)	521, 547, 730, 913
BstKTI	GATC	3 cut(s)	157, 191, 699
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	154, 188, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	563, 716, 725
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	4 cut(s)	395, 541, 820, 882
BstV2I	GAAGAC	2 cut(s)	133, 940
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	4 cut(s)	256, 671, 878, 912
BtsCI	GGATG	4 cut(s)	521, 547, 730, 913
BtsI	GCAGTG	2 cut(s)	590, 954
BtsIMutI	CAGTG	6 cut(s)	172, 590, 640, 719, 895, 954
Cac8I	GCNNGC	2 cut(s)	564, 880
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	262, 669, 682
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	5 cut(s)	81, 160, 433, 853, 954
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	3 cut(s)	326, 632, 677
DpnI	GATC	3 cut(s)	156, 190, 698
DpnII	GATC	3 cut(s)	154, 188, 696
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	2 cut(s)	262, 682
EcoO109I	RGGNCCY	1 cut(s)	682
EcoRV	GATATC	1 cut(s)	529
Esp3I	CGTCTC	1 cut(s)	374
FaeI	CATG	5 cut(s)	84, 163, 436, 856, 957
FaqI	GGGAC	2 cut(s)	248, 695
FatI	CATG	5 cut(s)	80, 159, 432, 852, 953
FauNDI	CATATG	1 cut(s)	568
Fnu4HI	GCNGC	4 cut(s)	409, 555, 834, 896
FokI	GGATG	4 cut(s)	528, 554, 737, 920
Fsp4HI	GCNGC	4 cut(s)	409, 555, 834, 896
FspBI	CTAG	4 cut(s)	522, 614, 714, 930
GluI	GCNGC	4 cut(s)	409, 555, 834, 896
HaeIII	GGCC	4 cut(s)	256, 671, 878, 912
HapII	CCGG	2 cut(s)	841, 879
Hin1I	GRCGYC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	84, 163, 436, 856, 957
HinfI	GANTC	2 cut(s)	355, 450
HpaII	CCGG	2 cut(s)	841, 879
HphI	GGTGA	1 cut(s)	104
Hpy166II	GTNNAC	3 cut(s)	229, 719, 737
Hpy188I	TCNGA	4 cut(s)	111, 393, 455, 770
Hpy8I	GTNNAC	3 cut(s)	229, 719, 737
HpyCH4III	ACNGT	3 cut(s)	262, 480, 890
HpyCH4IV	ACGT	1 cut(s)	429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	563, 716, 725
HpyF3I	CTNAG	3 cut(s)	326, 632, 677
HpySE526I	ACGT	1 cut(s)	429
Hsp92I	GRCGYC	1 cut(s)	429
Hsp92II	CATG	5 cut(s)	84, 163, 436, 856, 957
KflI	GGGWCCC	1 cut(s)	682
KroI	GCCGGC	1 cut(s)	878
KroNI	GCCGGC	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	154, 188, 696
LmnI	GCTCC	1 cut(s)	369
Lsp1109I	GCAGC	4 cut(s)	395, 541, 820, 882
LweI	GCATC	4 cut(s)	102, 506, 715, 934
MaeI	CTAG	4 cut(s)	522, 614, 714, 930
MaeII	ACGT	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	92, 167, 884
MalI	GATC	3 cut(s)	156, 190, 698
MboI	GATC	3 cut(s)	154, 188, 696
MboII	GAAGA	3 cut(s)	133, 749, 945
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	2 cut(s)	347, 721
MluCI	AATT	7 cut(s)	69, 97, 146, 173, 654, 804, 867
MmeI	TCCRAC	3 cut(s)	190, 405, 442
MnlI	CCTC	7 cut(s)	246, 423, 435, 532, 660, 868, 923
MroNI	GCCGGC	1 cut(s)	878
MseI	TTAA	3 cut(s)	68, 149, 903
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	841, 879
MwoI	GCNNNNNNNGC	3 cut(s)	563, 716, 725
NaeI	GCCGGC	1 cut(s)	880
NdeI	CATATG	1 cut(s)	568
NdeII	GATC	3 cut(s)	154, 188, 696
NgoMIV	GCCGGC	1 cut(s)	878
NlaIII	CATG	5 cut(s)	84, 163, 436, 856, 957
NlaIV	GGNNCC	4 cut(s)	264, 471, 683, 684
NmuCI	GTSAC	3 cut(s)	92, 167, 884
OliI	CACNNNNGTG	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	880
PfeI	GAWTC	2 cut(s)	355, 450
PflMI	CCANNNNNTGG	2 cut(s)	151, 386
PkrI	GCNGC	4 cut(s)	410, 556, 835, 897
PpuMI	RGGWCCY	1 cut(s)	682
PshBI	ATTAAT	1 cut(s)	149
Psp5II	RGGWCCY	1 cut(s)	682
PspN4I	GGNNCC	4 cut(s)	264, 471, 683, 684
PspPI	GGNCC	3 cut(s)	262, 669, 682
PspPPI	RGGWCCY	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	68, 149, 903
SatI	GCNGC	4 cut(s)	409, 555, 834, 896
Sau3AI	GATC	3 cut(s)	154, 188, 696
Sau96I	GGNCC	3 cut(s)	262, 669, 682
SduI	GDGCHC	2 cut(s)	347, 721
SetI	ASST	7 cut(s)	287, 301, 432, 604, 835, 897, 943
SfaNI	GCATC	4 cut(s)	102, 506, 715, 934
SinI	GGWCC	2 cut(s)	262, 682
SmiMI	CAYNNNNRTG	1 cut(s)	350
SpeI	ACTAGT	2 cut(s)	613, 713
Sse9I	AATT	7 cut(s)	69, 97, 146, 173, 654, 804, 867
SspMI	CTAG	4 cut(s)	522, 614, 714, 930
TaaI	ACNGT	3 cut(s)	262, 480, 890
TaiI	ACGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	251
TasI	AATT	7 cut(s)	69, 97, 146, 173, 654, 804, 867
TatI	WGTACW	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	355, 450
Tru1I	TTAA	3 cut(s)	68, 149, 903
Tru9I	TTAA	3 cut(s)	68, 149, 903
TscAI	CASTG	6 cut(s)	172, 597, 640, 726, 895, 954
TseFI	GTSAC	3 cut(s)	92, 167, 884
TseI	GCWGC	4 cut(s)	408, 554, 833, 895
Tsp45I	GTSAC	3 cut(s)	92, 167, 884
TspDTI	ATGAA	3 cut(s)	318, 571, 720
TspGWI	ACGGA	2 cut(s)	280, 356
TspRI	CASTG	6 cut(s)	172, 597, 640, 726, 895, 954
Van91I	CCANNNNNTGG	2 cut(s)	151, 386
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	2 cut(s)	262, 682
VspI	ATTAAT	1 cut(s)	149
XspI	CTAG	4 cut(s)	522, 614, 714, 930
ZraI	GACGTC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.