Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016400.1

Orthogroup ID

OG0002813

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4074

Gene Structure 4074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016400.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1770 bp

gttaagcgcctcagggaaaccctatactcagttgttcttgtccaggatatatcctttttcgacagagaatcagttggtgatttgacaagcagacttggggcagattgtcaacgattatcacttgtcattgcaaatgatattaacttgatattacgtaatgggcttcagggaactggtgcactgatcaatctgcttatattatcttggcctcttgcattatcagcactggttatatgtggtgttttatctgtgatttttcttctttatagcaagtaccaaaagaaagctgcaaaattaacccaagacttcactgctggggccaatgaagttgcacaagagacactttctctgatgagaacagtccgggtttttggaacagaaagaaaagaaattggaaggttcaagggatggctagacaaggtagcgtttataaacattcgagagagtatggctcgtgggttcttgagtatgagttttcataccctgtatcggtcaacacaggttattgctgtggtggtaggaggcatttctattatgagtggtcgtgtatcacctgagcaactaactaagtacgtattgtactgtgagtggttaatttatgcaactgggagggtcatagacaatttatcatcattagtcgagtctgttggagcaagtgaaaaggttctccagttgatggacttgttacccagcgaccaattcgtatcaaaaggtgtaaagttgcagagggtaatgggacatattcagttcgtaaacgtttcttttcactatccttctagggcaaaagtcaccattctagaggacataaatatttccatacaagcaaatgaagtggttgcaattgttggtctgagtggtagtggaaaaagcacattaatcaatctcttgcttcgtctttatgagccaataaatggtcacattaatattgatggtatccctatcaaagagttggatatcaggtggctgcgagggaaagttggatttgtgtcgcaggaaccaaatctatttcacatgaccatcaagtcaaacattaaatatggttgctccgatgatattaaggaggaagatataaaatcggctgcaaagctagcttatgctcataacttcatctcatctcttcctgacggatatgataccctagttgatgataacttactcagcggtggacaaaagcagcggattgcgattgctagggccattcttagagagattaatattgatggtatccctatcaaagagttggatatcaggtggctgcgagggaaagttggatttgtgtcgcaggaaccaaatctatttcacatgaccatcaagtcaaacattaaatatggttgctccgatgatattaaggaggaagatataaaatcggctgcaaagctagcttatgctcataacttcatctcatctcttcctgacggatatgataccctagttgatgataacttactcagcggtggacaaaagcagcggattgcgattgctagggccattcttagagacccagctatattaatccttgatgaagctaccagtgccttagattctgaagccgaacatcacattaaggggcttcttcatgcaatgaagaatgatgttaaagcaagaaccgtcattgtcattgcacataggctttcaaccatagaagctgctgacagaaccatcgtaatggacggaggccgagtcactgagatgggtgagcatgcagaactcctcaagaaggatggggtctatgcaaaattgattagagctcaaacaaatgctttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko02010 ko04142 map02010 map04142

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

589

Amino Acids

65.2

Weight (kDa)

8.37

Isoelectric Point (pI)

34.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70610 AT1G70610
fragaria_vesca	FvH4_4g25540 FvH4_4g25540 FvH4_4g25540 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960 FvH4_5g31960
malus_domestica	MD13G1101800.v1.1 MD17G1026800.v1.1
prunus_persica	Prupe.1G244000_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1 Prupe.3G291900_v2.0.a1
pyrus_communis	pycom13g08890 pycom17g02190
rosa_chinensis	RchiOBHm_Chr2g0173091 RchiOBHm_Chr4g0432941
rosa_laevigata	RLG00000006800 RLG00000022157
rosa_multiflora	Rmu_sc0001762.1_g000046 Rmu_sc0011236.1_g000009 Rmu_sc0016400.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079250 Rroxscaffold_5G00374340
rosa_rugosa	Rorug02G0565100 Rorug02G0565100 Rorug04G0264000 Rorug04G0264100 Rorug04G0264200 Rorug04G0264300
rosa_samantha	Rh2CG620900 Rh2DG669100 Rh4AG318000 Rh4CG341400 Rh4DG321300
rosa_wichuraiana	Rw2G052990 Rw4G027650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	431
AasI	GACNNNNNNGTC	2 cut(s)	1021, 1312
AccB7I	CCANNNNNTGG	2 cut(s)	676, 911
AciI	CCGC	4 cut(s)	1161, 1177, 1452, 1468
AclI	AACGTT	1 cut(s)	756
AcuI	CTGAAG	2 cut(s)	149, 1566
AfaI	GTAC	3 cut(s)	275, 572, 581
AfiI	CCNNNNNNNGG	4 cut(s)	489, 676, 911, 1717
AgsI	TTSAA	2 cut(s)	403, 1635
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	9 cut(s)	287, 1087, 1091, 1378, 1382, 1505, 1526, 1646, 1748
AluI	AGCT	9 cut(s)	287, 1087, 1091, 1378, 1382, 1505, 1526, 1646, 1748
Alw21I	GWGCWC	2 cut(s)	181, 1750
Alw26I	GTCTC	2 cut(s)	332, 1491
Alw44I	GTGCAC	1 cut(s)	177
AoxI	GGCC	5 cut(s)	206, 318, 1194, 1485, 1675
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	8 cut(s)	287, 964, 1079, 1174, 1255, 1370, 1465, 1646
AseI	ATTAAT	4 cut(s)	875, 921, 1212, 1511
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	3 cut(s)	318, 1194, 1485
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	4 cut(s)	89, 543, 781, 1706
AsuNHI	GCTAGC	2 cut(s)	1087, 1378
AxyI	CCTNAGG	1 cut(s)	11
BaeGI	GKGCMC	1 cut(s)	181
BaeI	ACNNNNGTAYC	4 cut(s)	1125, 1158, 1416, 1449
BanII	GRGCYC	1 cut(s)	1750
BauI	CACGAG	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	181, 1750
BbvI	GCAGC	8 cut(s)	274, 951, 1066, 1186, 1242, 1357, 1477, 1633
BccI	CCATC	9 cut(s)	402, 670, 923, 1025, 1214, 1316, 1667, 1684, 1715
BciT130I	CCWGG	1 cut(s)	44
BciVI	GTATCC	2 cut(s)	944, 1235
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	332, 1491
BfaI	CTAG	9 cut(s)	413, 777, 797, 1088, 1139, 1191, 1379, 1430, 1482
BfoI	RGCGCY	1 cut(s)	10
BfuI	GTATCC	2 cut(s)	944, 1235
BisI	GCNGC	8 cut(s)	288, 965, 1080, 1175, 1256, 1371, 1466, 1647
BlsI	GCNGC	8 cut(s)	289, 966, 1081, 1176, 1257, 1372, 1467, 1648
Bme1390I	CCNGG	2 cut(s)	44, 365
BmgT120I	GGNCC	3 cut(s)	318, 1194, 1485
BmiI	GGNNCC	3 cut(s)	319, 996, 1287
BmrFI	CCNGG	2 cut(s)	44, 365
BmrI	ACTGGG	1 cut(s)	615
BmtI	GCTAGC	2 cut(s)	1091, 1382
BmuI	ACTGGG	1 cut(s)	615
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	2 cut(s)	484, 1697
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	2 cut(s)	155, 574
BsaI	GGTCTC	1 cut(s)	1491
BsaXI	ACNNNNNCTCC	2 cut(s)	1665, 1695
Bsc4I	CCNNNNNNNGG	4 cut(s)	489, 676, 911, 1717
Bse1I	ACTGG	5 cut(s)	178, 231, 610, 670, 1530
Bse21I	CCTNAGG	1 cut(s)	11
Bse3DI	GCAATG	3 cut(s)	126, 1587, 1617
BseBI	CCWGG	1 cut(s)	44
BseGI	GGATG	2 cut(s)	413, 1726
BseLI	CCNNNNNNNGG	4 cut(s)	489, 676, 911, 1717
BseMI	GCAATG	3 cut(s)	126, 1587, 1617
BseMII	CTCAG	7 cut(s)	25, 42, 546, 842, 1171, 1462, 1677
BseNI	ACTGG	5 cut(s)	178, 231, 610, 670, 1530
BseRI	GAGGAG	1 cut(s)	1700
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	8 cut(s)	274, 951, 1066, 1186, 1242, 1357, 1477, 1633
BseYI	CCCAGC	3 cut(s)	314, 689, 1501
BshFI	GGCC	5 cut(s)	208, 320, 1196, 1487, 1677
BsiHKAI	GWGCWC	2 cut(s)	181, 1750
BsiSI	CCGG	1 cut(s)	364
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	4 cut(s)	489, 676, 911, 1717
BsmAI	GTCTC	2 cut(s)	332, 1491
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	5 cut(s)	208, 320, 1196, 1487, 1677
Bso31I	GGTCTC	1 cut(s)	1491
Bsp1286I	GDGCHC	2 cut(s)	181, 1750
Bsp143I	GATC	1 cut(s)	183
BspACI	CCGC	4 cut(s)	1161, 1177, 1452, 1468
BspANI	GGCC	5 cut(s)	208, 320, 1196, 1487, 1677
BspCNI	CTCAG	7 cut(s)	24, 41, 547, 843, 1170, 1461, 1678
BspLI	GGNNCC	3 cut(s)	319, 996, 1287
BspOI	GCTAGC	2 cut(s)	1091, 1382
BspTNI	GGTCTC	1 cut(s)	1491
BsrDI	GCAATG	3 cut(s)	126, 1587, 1617
BsrI	ACTGG	5 cut(s)	178, 231, 610, 670, 1530
BssMI	GATC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	453
Bst2BI	CACGAG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	361, 584, 1609
Bst6I	CTCTTC	2 cut(s)	1122, 1413
BstBAI	YACGTR	2 cut(s)	155, 574
BstC8I	GCNNGC	3 cut(s)	1089, 1380, 1701
BstENI	CCTNNNNNAGG	1 cut(s)	1715
BstF5I	GGATG	2 cut(s)	413, 1726
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	2 cut(s)	332, 1491
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 1088, 1379, 1532
BstNI	CCWGG	1 cut(s)	44
BstNSI	RCATGY	1 cut(s)	1703
BstSCI	CCNGG	2 cut(s)	42, 363
BstSLI	GKGCMC	1 cut(s)	181
BstSNI	TACGTA	2 cut(s)	155, 574
BstV1I	GCAGC	8 cut(s)	274, 951, 1066, 1186, 1242, 1357, 1477, 1633
BstXI	CCANNNNNNTGG	1 cut(s)	1666
Bsu36I	CCTNAGG	1 cut(s)	11
BsuI	GTATCC	2 cut(s)	944, 1235
BsuRI	GGCC	5 cut(s)	208, 320, 1196, 1487, 1677
BtsCI	GGATG	2 cut(s)	413, 1726
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	5 cut(s)	179, 224, 309, 1537, 1683
Cac8I	GCNNGC	3 cut(s)	1089, 1380, 1701
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	3 cut(s)	318, 1194, 1485
Csp6I	GTAC	3 cut(s)	274, 571, 580
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviAII	CATG	4 cut(s)	1012, 1303, 1577, 1700
CviQI	GTAC	3 cut(s)	274, 571, 580
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
DrdI	GACNNNNNNGTC	2 cut(s)	1021, 1312
DseDI	GACNNNNNNGTC	2 cut(s)	1021, 1312
Eam1104I	CTCTTC	2 cut(s)	1122, 1413
EarI	CTCTTC	2 cut(s)	1122, 1413
Ecl136II	GAGCTC	1 cut(s)	1748
Eco105I	TACGTA	2 cut(s)	155, 574
Eco24I	GRGCYC	1 cut(s)	1750
Eco31I	GGTCTC	1 cut(s)	1491
Eco32I	GATATC	2 cut(s)	955, 1246
Eco53kI	GAGCTC	1 cut(s)	1748
Eco57I	CTGAAG	2 cut(s)	149, 1566
Eco81I	CCTNAGG	1 cut(s)	11
EcoICRI	GAGCTC	1 cut(s)	1748
EcoNI	CCTNNNNNAGG	1 cut(s)	1715
EcoRII	CCWGG	1 cut(s)	42
EcoRV	GATATC	2 cut(s)	955, 1246
EcoT38I	GRGCYC	1 cut(s)	1750
FaeI	CATG	4 cut(s)	1015, 1306, 1580, 1703
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	4 cut(s)	1011, 1302, 1576, 1699
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	8 cut(s)	288, 965, 1080, 1175, 1256, 1371, 1466, 1647
FokI	GGATG	2 cut(s)	420, 1733
FriOI	GRGCYC	1 cut(s)	1750
Fsp4HI	GCNGC	8 cut(s)	288, 965, 1080, 1175, 1256, 1371, 1466, 1647
FspBI	CTAG	9 cut(s)	413, 777, 797, 1088, 1139, 1191, 1379, 1430, 1482
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	8 cut(s)	288, 965, 1080, 1175, 1256, 1371, 1466, 1647
GsaI	CCCAGC	3 cut(s)	318, 693, 1505
GsuI	CTGGAG	1 cut(s)	653
HaeII	RGCGCY	1 cut(s)	10
HaeIII	GGCC	5 cut(s)	208, 320, 1196, 1487, 1677
HapII	CCGG	1 cut(s)	364
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	4 cut(s)	1015, 1306, 1580, 1703
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	2 cut(s)	110, 495
HindII	GTYRAC	2 cut(s)	110, 495
HinfI	GANTC	4 cut(s)	68, 641, 1541, 1680
HpaII	CCGG	1 cut(s)	364
HphI	GGTGA	4 cut(s)	89, 543, 781, 1706
Hpy166II	GTNNAC	6 cut(s)	110, 179, 495, 754, 1166, 1457
Hpy188I	TCNGA	5 cut(s)	351, 852, 1048, 1339, 1546
Hpy188III	TCNNGA	6 cut(s)	440, 463, 797, 1121, 1412, 1714
Hpy8I	GTNNAC	6 cut(s)	110, 179, 495, 754, 1166, 1457
HpyAV	CCTTC	3 cut(s)	390, 783, 1711
HpyCH4III	ACNGT	3 cut(s)	361, 584, 1609
HpyCH4IV	ACGT	3 cut(s)	154, 573, 756
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 1088, 1379, 1532
HpySE526I	ACGT	3 cut(s)	154, 573, 756
Hsp92II	CATG	4 cut(s)	1015, 1306, 1580, 1703
HspAI	GCGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	650, 1049, 1340
Lsp1109I	GCAGC	8 cut(s)	274, 951, 1066, 1186, 1242, 1357, 1477, 1633
MaeI	CTAG	9 cut(s)	413, 777, 797, 1088, 1139, 1191, 1379, 1430, 1482
MaeII	ACGT	3 cut(s)	154, 573, 756
MaeIII	GTNAC	4 cut(s)	684, 787, 914, 1681
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	7 cut(s)	251, 1076, 1109, 1367, 1400, 1565, 1597
MfeI	CAATTG	1 cut(s)	840
MhlI	GDGCHC	2 cut(s)	181, 1750
MluCI	AATT	7 cut(s)	293, 390, 594, 622, 698, 840, 1736
MlyI	GAGTC	2 cut(s)	650, 1689
MmeI	TCCRAC	5 cut(s)	628, 930, 958, 1221, 1249
MroXI	GAANNNNTTC	1 cut(s)	663
MslI	CAYNNNNRTG	2 cut(s)	1664, 1688
MspA1I	CMGCKG	4 cut(s)	1161, 1177, 1452, 1468
MspI	CCGG	1 cut(s)	364
MspR9I	CCNGG	2 cut(s)	44, 365
MunI	CAATTG	1 cut(s)	840
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	4 cut(s)	221, 1088, 1379, 1532
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	183
NheI	GCTAGC	2 cut(s)	1087, 1378
NlaIII	CATG	4 cut(s)	1015, 1306, 1580, 1703
NlaIV	GGNNCC	3 cut(s)	319, 996, 1287
NmeAIII	GCCGAG	1 cut(s)	1703
NmuCI	GTSAC	3 cut(s)	787, 914, 1681
NspI	RCATGY	1 cut(s)	1703
PaeI	GCATGC	1 cut(s)	1703
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	68, 1541
PflMI	CCANNNNNTGG	2 cut(s)	676, 911
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	8 cut(s)	289, 966, 1081, 1176, 1257, 1372, 1467, 1648
PleI	GAGTC	2 cut(s)	649, 1688
PpsI	GAGTC	2 cut(s)	649, 1688
Ppu21I	YACGTR	2 cut(s)	155, 574
PshBI	ATTAAT	4 cut(s)	875, 921, 1212, 1511
PsiI	TTATAA	1 cut(s)	431
Psp124BI	GAGCTC	1 cut(s)	1750
Psp1406I	AACGTT	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	42
PspFI	CCCAGC	3 cut(s)	314, 689, 1501
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	319, 996, 1287
PspPI	GGNCC	3 cut(s)	318, 1194, 1485
RsaI	GTAC	3 cut(s)	275, 572, 581
RsaNI	GTAC	3 cut(s)	274, 571, 580
RseI	CAYNNNNRTG	2 cut(s)	1664, 1688
SacI	GAGCTC	1 cut(s)	1750
SatI	GCNGC	8 cut(s)	288, 965, 1080, 1175, 1256, 1371, 1466, 1647
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	3 cut(s)	318, 1194, 1485
SchI	GAGTC	2 cut(s)	650, 1689
ScrFI	CCNGG	2 cut(s)	44, 365
SduI	GDGCHC	2 cut(s)	181, 1750
SmiMI	CAYNNNNRTG	2 cut(s)	1664, 1688
SmlI	CTYRAG	2 cut(s)	463, 1712
SmoI	CTYRAG	2 cut(s)	463, 1712
SnaBI	TACGTA	2 cut(s)	155, 574
SphI	GCATGC	1 cut(s)	1703
Sse9I	AATT	7 cut(s)	293, 390, 594, 622, 698, 840, 1736
SsiI	CCGC	4 cut(s)	1161, 1177, 1452, 1468
SspI	AATATT	3 cut(s)	811, 925, 1216
SspMI	CTAG	9 cut(s)	413, 777, 797, 1088, 1139, 1191, 1379, 1430, 1482
SstI	GAGCTC	1 cut(s)	1750
StyD4I	CCNGG	2 cut(s)	42, 363
TaaI	ACNGT	3 cut(s)	361, 584, 1609
TaiI	ACGT	3 cut(s)	157, 576, 759
TaqI	TCGA	3 cut(s)	60, 439, 639
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	7 cut(s)	293, 390, 594, 622, 698, 840, 1736
TatI	WGTACW	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	68, 1541
TscAI	CASTG	5 cut(s)	186, 231, 316, 1537, 1690
TseFI	GTSAC	3 cut(s)	787, 914, 1681
TseI	GCWGC	8 cut(s)	287, 964, 1079, 1174, 1255, 1370, 1465, 1646
Tsp45I	GTSAC	3 cut(s)	787, 914, 1681
TspDTI	ATGAA	8 cut(s)	339, 467, 843, 1096, 1387, 1536, 1565, 1598
TspGWI	ACGGA	3 cut(s)	1140, 1431, 1686
TspRI	CASTG	5 cut(s)	186, 231, 316, 1537, 1690
Van91I	CCANNNNNTGG	2 cut(s)	676, 911
VneI	GTGCAC	1 cut(s)	177
VspI	ATTAAT	4 cut(s)	875, 921, 1212, 1511
XagI	CCTNNNNNAGG	1 cut(s)	1715
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	1703
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	9 cut(s)	413, 777, 797, 1088, 1139, 1191, 1379, 1430, 1482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.