FvH4_5g31960

ABC transporter B family member 26, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002813
Physical Location & Seq
Forward (+)
23061620 .. 23067473
5854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31960.t4

Sequence Viewer

Length: 711 bp
ATGAGAACAGTCCGGGTTTTTGGAACAGAAAGAAAAGAAATTGGAAGGTTCAAGGGATGGCTAGACAAGGTAGCGTTTATAAACATTCGGGAAAGTATGGCTCATGGGTTCTGGAGTATGAGTTTCATTACTCTGTATCGGTCAACACAGGTTATTGCCGTGGTGTTAGGAGGCATTTCTATTATGAGTAGTCGTGTATCACCTGAGCAATTAACTAAGTATGTACTGTACTGTGAGTGGTTAATTTACGCAACTTGGAGGGTAACAGACAATTTATCATCATTAGTCCAGTCTGTTGGAGCAAGCGAAAAAGTTCTCCAGTGGATGGACTTGCTGCCCAGCGACCAGTTCATATCAAAAGGTGCAAAGATGCAGAAGATAATGGGACACATTCAGTTCGTAGACGTTTCTTTTCACTATCCTTCTAGGGAAACTGTCCCCATTCTAGAGGACATAAATGTTTCCATACAAGCAAATGAAGTGGTCGCAATTGTTGGTCTGAGTGGTAGTGGAAAAAGCACATTAATCAATCTGTTGCTTCGTCTTTACGAACCGACAAATGGTCACATTAATATCAATGGGTTCCCTATCCGAGAGTTGGATATCAGGTGGCTGAGAGAGAAAGTTGGATATGTGGCACAGACAGGAACCAAATTTAGTTCACATGACCATCAAGTCGAACATTACATATGGTTGCTCCGAAGATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02010 ko04142 map02010 map04142
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

237

Amino Acids

27.1

Weight (kDa)

9.3

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 149 - 297 1.8e-34 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 80
AasI GACNNNNNNGTC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 325
AccI GTMKAC 1 cut(s) 402
AcsI RAATTY 1 cut(s) 653
AfaI GTAC 2 cut(s) 225, 230
AfiI CCNNNNNNNGG 3 cut(s) 325, 560, 598
AgsI TTSAA 1 cut(s) 52
AhdI GACNNNNNGTC 1 cut(s) 561
ApeKI GCWGC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 653
AseI ATTAAT 2 cut(s) 524, 570
Asp700I GAANNNNTTC 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 1 cut(s) 192
BbvI GCAGC 1 cut(s) 321
BccI CCATC 3 cut(s) 51, 319, 678
BceAI ACGGC 1 cut(s) 143
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 3 cut(s) 62, 426, 446
BisI GCNGC 1 cut(s) 335
BlsI GCNGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 14
BmeRI GACNNNNNGTC 1 cut(s) 561
BmiI GGNNCC 2 cut(s) 584, 649
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 1 cut(s) 360
BpmI CTGGAG 2 cut(s) 133, 302
Bpu10I CCTNAGC 1 cut(s) 204
BpuMI CCSGG 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 106, 136
Bsc4I CCNNNNNNNGG 3 cut(s) 325, 560, 598
Bse1I ACTGG 3 cut(s) 289, 319, 346
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 62, 330
BseLI CCNNNNNNNGG 3 cut(s) 325, 560, 598
BseMII CTCAG 3 cut(s) 195, 491, 605
BseNI ACTGG 3 cut(s) 289, 319, 346
BseXI GCAGC 1 cut(s) 321
BseYI CCCAGC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 2 cut(s) 399, 422
BslI CCNNNNNNNGG 3 cut(s) 325, 560, 598
BsmFI GGGAC 2 cut(s) 399, 422
BspCNI CTCAG 3 cut(s) 196, 492, 606
BspLI GGNNCC 2 cut(s) 584, 649
BsrI ACTGG 3 cut(s) 289, 319, 346
BssECI CCNNGG 1 cut(s) 159
Bst4CI ACNGT 4 cut(s) 10, 228, 233, 436
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 4 cut(s) 204, 216, 500, 614
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 2 cut(s) 62, 330
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 321
BstXI CCANNNNNNTGG 1 cut(s) 296
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 2 cut(s) 62, 330
BtsIMutI CAGTG 1 cut(s) 326
Cac8I GCNNGC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 224, 229
CspCI CAANNNNNGTGG 2 cut(s) 462, 497
CviAII CATG 2 cut(s) 104, 665
CviJI RGCY 3 cut(s) 61, 101, 613
CviKI_1 RGCY 3 cut(s) 61, 101, 613
CviQI GTAC 2 cut(s) 224, 229
DdeI CTNAG 4 cut(s) 204, 216, 500, 614
DrdI GACNNNNNNGTC 1 cut(s) 674
DriI GACNNNNNGTC 1 cut(s) 561
DseDI GACNNNNNNGTC 1 cut(s) 674
Eam1105I GACNNNNNGTC 1 cut(s) 561
Eco32I GATATC 1 cut(s) 604
EcoRV GATATC 1 cut(s) 604
FaeI CATG 2 cut(s) 107, 668
FaqI GGGAC 2 cut(s) 399, 422
FatI CATG 2 cut(s) 103, 664
FauNDI CATATG 1 cut(s) 689
FblI GTMKAC 1 cut(s) 402
Fnu4HI GCNGC 1 cut(s) 335
FokI GGATG 2 cut(s) 69, 337
Fsp4HI GCNGC 1 cut(s) 335
FspBI CTAG 3 cut(s) 62, 426, 446
GluI GCNGC 1 cut(s) 335
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 2 cut(s) 133, 302
HapII CCGG 1 cut(s) 13
Hin1II CATG 2 cut(s) 107, 668
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HpaII CCGG 1 cut(s) 13
HphI GGTGA 1 cut(s) 192
Hpy166II GTNNAC 3 cut(s) 144, 403, 662
Hpy188I TCNGA 3 cut(s) 501, 593, 701
Hpy188III TCNNGA 3 cut(s) 89, 112, 446
Hpy8I GTNNAC 3 cut(s) 144, 403, 662
HpyAV CCTTC 2 cut(s) 39, 432
HpyCH4III ACNGT 4 cut(s) 10, 228, 233, 436
HpyCH4IV ACGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 365, 373
HpyF3I CTNAG 4 cut(s) 204, 216, 500, 614
HpySE526I ACGT 1 cut(s) 405
Hsp92II CATG 2 cut(s) 107, 668
LmnI GCTCC 2 cut(s) 299, 702
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 1 cut(s) 360
MaeI CTAG 3 cut(s) 62, 426, 446
MaeII ACGT 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 262, 563
MboII GAAGA 1 cut(s) 388
MfeI CAATTG 1 cut(s) 489
MluCI AATT 6 cut(s) 39, 209, 243, 271, 489, 653
MmeI TCCRAC 3 cut(s) 277, 579, 607
MnlI CCTC 3 cut(s) 164, 252, 442
MroXI GAANNNNTTC 1 cut(s) 312
MseI TTAA 5 cut(s) 212, 242, 524, 570, 709
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 489
NciI CCSGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 689
NlaIII CATG 2 cut(s) 107, 668
NlaIV GGNNCC 2 cut(s) 584, 649
NmuCI GTSAC 1 cut(s) 563
PdmI GAANNNNTTC 1 cut(s) 312
PflMI CCANNNNNTGG 1 cut(s) 325
PkrI GCNGC 1 cut(s) 336
PshBI ATTAAT 2 cut(s) 524, 570
PsiI TTATAA 1 cut(s) 80
PspFI CCCAGC 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 584, 649
RsaI GTAC 2 cut(s) 225, 230
RsaNI GTAC 2 cut(s) 224, 229
SaqAI TTAA 5 cut(s) 212, 242, 524, 570, 709
SatI GCNGC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 14
SetI ASST 7 cut(s) 50, 72, 153, 205, 364, 408, 611
SfaNI GCATC 1 cut(s) 360
Sse9I AATT 6 cut(s) 39, 209, 243, 271, 489, 653
SspMI CTAG 3 cut(s) 62, 426, 446
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 4 cut(s) 10, 228, 233, 436
TaiI ACGT 1 cut(s) 408
TaqI TCGA 1 cut(s) 678
TaqII GACCGA 1 cut(s) 129
TasI AATT 6 cut(s) 39, 209, 243, 271, 489, 653
TatI WGTACW 2 cut(s) 223, 228
Tru1I TTAA 5 cut(s) 212, 242, 524, 570, 709
Tru9I TTAA 5 cut(s) 212, 242, 524, 570, 709
TscAI CASTG 1 cut(s) 326
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 3 cut(s) 115, 340, 492
TspRI CASTG 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 325
VspI ATTAAT 2 cut(s) 524, 570
XapI RAATTY 1 cut(s) 653
XbaI TCTAGA 1 cut(s) 445
XmiI GTMKAC 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 312
XspI CTAG 3 cut(s) 62, 426, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.