Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006527

Physical Location & Seq

Genomic Coordinates Reverse (-)

5916935 .. 5919129

Gene Structure 2195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCAAATTCTGGGAAAGATGCTATGCTTCAGCAGTCAACTGTCAAAAAGCCTTCCAATGATAGGCTTGATGCCACTGTAAATGACCGTTCTTCTGTAGAGCTTCAGGAGCATAGTAAAAGTCAGACAATTTTGGAGAGCAGACGGGGCAAAACCAGTTCACTTGAGTCCTATAATATACACAAGGATGATGATAGTAATGGTGATAGAAATCTGCCAGATGGAACTACTGCCTCTAGGTTGAAGGATACCGTAGGAATATTCAAACCTGAACTACCTAAAGAAAATGTCAATGTGAAGACCACATCAAAAGATGACCCACAAGTTACGGAGTCCAGGATGAAACCTGATAAGCATGATCGAGACGAGAATAAAAAGAGTTCTGTGAAAGACATCAATAAGGAGGTAGAAAGTGGTAAGATTAGGACAGATGATAAGGGTGATGAGAATCGTAAGGGGCAGTATCCTAGAAAGGAAAGGGCAGATGATCGGAATGGCTCAAAAGAAAAGGTGAAAGAGCAAAATGTAAAGGAATCTGAGTCAAGAAAAAGGTCTTCCCATGCTGATGCCAAGGAGGGTAGAAGAGAAACAGAGCGACTCCATAGGGCAAGTGGTAAAGAAGATAAGGAAAGGAAAAGAGAACGGACAAAGGATAAGGAGGGTGATAGATCAAGACACAAACATTCTACTGACTCAAGCAGGCACAAGAGAAGGCGCTCCTCTTCTGTTGGCAGTAGAGGAAGAAACAGCAAGGATGATTCAAGCGATGAAGCTTCTGATGATTCTAAAAGGAAGCGGCATTCAAGGAGACGTAACTTATCACCATCACCTGTCAGGTCTAGGAGAAGACAAGTTTCGCGGTCTCCACATAGCAAGCATTCTCAGCGCAGGCATTCTCCTTATTCTTCTCTTGAGACGAGCAGGGGAAGAAGGTCAAGATCCAGATCACCTGTGCGGCGGCAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006486 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008378 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0034645 GO:0035250 GO:0036211 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0070085 GO:0071554 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228 Nucleotid_trans PNISR

Protein Analysis

323

Amino Acids

37.19

Weight (kDa)

10.42

Isoelectric Point (pI)

87.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620 AT1G70620
fragaria_vesca	FvH4_4g25541
malus_domestica	MD13G1101700.v1.1 MD16G1102300.v1.1
prunus_persica	Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1 Prupe.1G244100_v2.0.a1
pyrus_communis	pycom13g08880 pycom16g08690
rosa_chinensis	RchiOBHm_Chr4g0432951
rosa_multiflora	Rmu_sc0001762.1_g000045
rosa_rugosa	Rorug04G0264300
rosa_samantha	Rh4AG318100 Rh4BG326200 Rh4CG341500 Rh4DG321400
rosa_wichuraiana	Rw4G027660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	11
AccII	CGCG	1 cut(s)	859
AciI	CCGC	4 cut(s)	796, 859, 955, 958
AclWI	GGATC	1 cut(s)	933
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	14, 89
AfiI	CCNNNNNNNGG	2 cut(s)	11, 63
AgsI	TTSAA	4 cut(s)	244, 265, 762, 804
AjnI	CCWGG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	103, 773
AluI	AGCT	2 cut(s)	103, 773
Alw26I	GTCTC	4 cut(s)	357, 802, 867, 908
AlwI	GGATC	1 cut(s)	933
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	717, 888
AsuHPI	GGTGA	7 cut(s)	215, 452, 523, 674, 813, 819, 939
BbsI	GAAGAC	3 cut(s)	305, 546, 853
BccI	CCATC	2 cut(s)	215, 832
BciT130I	CCWGG	1 cut(s)	337
BciVI	GTATCC	2 cut(s)	241, 474
BcoDI	GTCTC	4 cut(s)	357, 802, 867, 908
BfaI	CTAG	3 cut(s)	237, 468, 840
BfmI	CTRYAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	718
BfuI	GTATCC	2 cut(s)	241, 474
BisI	GCNGC	3 cut(s)	797, 956, 959
BlsI	GCNGC	3 cut(s)	798, 957, 960
Bme1390I	CCNGG	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	337
BmsI	GCATC	3 cut(s)	10, 61, 556
BpiI	GAAGAC	3 cut(s)	305, 546, 853
BpuEI	CTTGAG	3 cut(s)	185, 679, 932
BsaBI	GATNNNNATC	3 cut(s)	210, 447, 943
BsaI	GGTCTC	1 cut(s)	867
BsaJI	CCNNGG	1 cut(s)	570
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 63
Bse1I	ACTGG	1 cut(s)	156
Bse8I	GATNNNNATC	3 cut(s)	210, 447, 943
BseBI	CCWGG	1 cut(s)	337
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	3 cut(s)	193, 345, 760
BseJI	GATNNNNATC	3 cut(s)	210, 447, 943
BseLI	CCNNNNNNNGG	2 cut(s)	11, 63
BseMII	CTCAG	2 cut(s)	528, 896
BseNI	ACTGG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	709
Bsh1236I	CGCG	1 cut(s)	859
BslI	CCNNNNNNNGG	2 cut(s)	11, 63
BsmAI	GTCTC	4 cut(s)	357, 802, 867, 908
BsmBI	CGTCTC	3 cut(s)	357, 802, 908
BsmI	GAATGC	3 cut(s)	799, 877, 892
Bso31I	GGTCTC	1 cut(s)	867
Bsp143I	GATC	5 cut(s)	358, 487, 668, 938, 944
BspACI	CCGC	4 cut(s)	796, 859, 955, 958
BspCNI	CTCAG	2 cut(s)	529, 895
BspFNI	CGCG	1 cut(s)	859
BspPI	GGATC	1 cut(s)	933
BspTNI	GGTCTC	1 cut(s)	867
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	5 cut(s)	358, 487, 668, 938, 944
BssT1I	CCWWGG	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	337
Bst4CI	ACNGT	4 cut(s)	43, 79, 89, 253
Bst6I	CTCTTC	2 cut(s)	577, 727
BstC8I	GCNNGC	3 cut(s)	701, 875, 890
BstDEI	CTNAG	2 cut(s)	537, 882
BstF5I	GGATG	3 cut(s)	193, 345, 760
BstFNI	CGCG	1 cut(s)	859
BstH2I	RGCGCY	1 cut(s)	718
BstHHI	GCGC	2 cut(s)	717, 888
BstKTI	GATC	5 cut(s)	361, 490, 671, 941, 947
BstMAI	GTCTC	4 cut(s)	357, 802, 867, 908
BstMBI	GATC	5 cut(s)	358, 487, 668, 938, 944
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 147, 883
BstNI	CCWGG	1 cut(s)	337
BstSCI	CCNGG	1 cut(s)	335
BstSFI	CTRYAG	1 cut(s)	96
BstUI	CGCG	1 cut(s)	859
BstV2I	GAAGAC	3 cut(s)	305, 546, 853
BstX2I	RGATCY	1 cut(s)	938
BstYI	RGATCY	1 cut(s)	938
BsuI	GTATCC	2 cut(s)	241, 474
BtgZI	GCGATG	1 cut(s)	780
BtsCI	GGATG	3 cut(s)	193, 345, 760
BtsIMutI	CAGTG	1 cut(s)	75
Cac8I	GCNNGC	3 cut(s)	701, 875, 890
CfoI	GCGC	2 cut(s)	717, 888
CviAII	CATG	2 cut(s)	356, 560
CviJI	RGCY	5 cut(s)	52, 67, 103, 498, 773
CviKI_1	RGCY	5 cut(s)	52, 67, 103, 498, 773
DdeI	CTNAG	2 cut(s)	537, 882
DpnI	GATC	5 cut(s)	360, 489, 670, 940, 946
DpnII	GATC	5 cut(s)	358, 487, 668, 938, 944
Eam1104I	CTCTTC	2 cut(s)	577, 727
EarI	CTCTTC	2 cut(s)	577, 727
Eco130I	CCWWGG	1 cut(s)	570
Eco31I	GGTCTC	1 cut(s)	867
Eco57I	CTGAAG	2 cut(s)	14, 89
EcoRII	CCWGG	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	570
Esp3I	CGTCTC	3 cut(s)	357, 802, 908
FaeI	CATG	2 cut(s)	359, 563
FaiI	YATR	8 cut(s)	26, 114, 174, 179, 357, 561, 603, 870
FatI	CATG	2 cut(s)	355, 559
Fnu4HI	GCNGC	3 cut(s)	797, 956, 959
FokI	GGATG	3 cut(s)	200, 352, 767
Fsp4HI	GCNGC	3 cut(s)	797, 956, 959
FspBI	CTAG	3 cut(s)	237, 468, 840
GlaI	GCGC	2 cut(s)	716, 887
GluI	GCNGC	3 cut(s)	797, 956, 959
HaeII	RGCGCY	1 cut(s)	718
HhaI	GCGC	2 cut(s)	717, 888
Hin1II	CATG	2 cut(s)	359, 563
Hin6I	GCGC	2 cut(s)	715, 886
HinP1I	GCGC	2 cut(s)	715, 886
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	9 cut(s)	167, 332, 448, 533, 539, 597, 692, 758, 782
HphI	GGTGA	7 cut(s)	215, 452, 523, 674, 813, 819, 939
Hpy166II	GTNNAC	2 cut(s)	39, 161
Hpy188I	TCNGA	4 cut(s)	126, 492, 538, 778
Hpy188III	TCNNGA	7 cut(s)	107, 362, 543, 672, 911, 936, 942
Hpy8I	GTNNAC	2 cut(s)	39, 161
HpyAV	CCTTC	4 cut(s)	63, 238, 705, 924
HpyCH4III	ACNGT	4 cut(s)	43, 79, 89, 253
HpyCH4IV	ACGT	1 cut(s)	811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 147, 883
HpyF3I	CTNAG	2 cut(s)	537, 882
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	2 cut(s)	359, 563
HspAI	GCGC	2 cut(s)	715, 886
Kzo9I	GATC	5 cut(s)	358, 487, 668, 938, 944
LmnI	GCTCC	2 cut(s)	109, 722
LweI	GCATC	3 cut(s)	10, 61, 556
MaeI	CTAG	3 cut(s)	237, 468, 840
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	2 cut(s)	325, 812
MalI	GATC	5 cut(s)	360, 489, 670, 940, 946
MboI	GATC	5 cut(s)	358, 487, 668, 938, 944
MflI	RGATCY	1 cut(s)	938
MluCI	AATT	2 cut(s)	7, 129
MlyI	GAGTC	5 cut(s)	176, 341, 548, 591, 686
MnlI	CCTC	6 cut(s)	244, 397, 568, 652, 730, 731
MslI	CAYNNNNRTG	2 cut(s)	186, 564
MspR9I	CCNGG	1 cut(s)	337
Mva1269I	GAATGC	3 cut(s)	799, 877, 892
MvaI	CCWGG	1 cut(s)	337
MvnI	CGCG	1 cut(s)	859
MwoI	GCNNNNNNNGC	3 cut(s)	109, 147, 883
NdeII	GATC	5 cut(s)	358, 487, 668, 938, 944
NlaIII	CATG	2 cut(s)	359, 563
PctI	GAATGC	3 cut(s)	799, 877, 892
PfeI	GAWTC	4 cut(s)	448, 533, 758, 782
PflMI	CCANNNNNTGG	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	798, 957, 960
PleI	GAGTC	5 cut(s)	175, 340, 547, 591, 686
PpsI	GAGTC	5 cut(s)	175, 340, 547, 591, 686
Psp6I	CCWGG	1 cut(s)	335
PspGI	CCWGG	1 cut(s)	335
PsuI	RGATCY	1 cut(s)	938
RseI	CAYNNNNRTG	2 cut(s)	186, 564
SatI	GCNGC	3 cut(s)	797, 956, 959
Sau3AI	GATC	5 cut(s)	358, 487, 668, 938, 944
SchI	GAGTC	5 cut(s)	176, 341, 548, 591, 686
ScrFI	CCNGG	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	10, 61, 556
SfcI	CTRYAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	2 cut(s)	186, 564
SmlI	CTYRAG	3 cut(s)	164, 694, 911
SmoI	CTYRAG	3 cut(s)	164, 694, 911
Sse9I	AATT	2 cut(s)	7, 129
SsiI	CCGC	4 cut(s)	796, 859, 955, 958
SspI	AATATT	1 cut(s)	261
SspMI	CTAG	3 cut(s)	237, 468, 840
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	570
TaaI	ACNGT	4 cut(s)	43, 79, 89, 253
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	7, 129
TauI	GCSGC	3 cut(s)	799, 958, 961
TfiI	GAWTC	4 cut(s)	448, 533, 758, 782
TscAI	CASTG	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	356, 783
TspGWI	ACGGA	2 cut(s)	344, 658
TspRI	CASTG	1 cut(s)	82
Van91I	CCANNNNNTGG	1 cut(s)	11
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	608
XspI	CTAG	3 cut(s)	237, 468, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.