Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Reverse (-)

10697037 .. 10697471

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1138900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGAGTGCATTTGCTGCTGGACAAGCTGCAGCCTATAAGATGTTTGAGACGATTAACAGAAAGCCGGATATAGATGCTTATGACACTAATGGGCAGCAGTTACAGGATATACGTGGAGAGATGGAACTGAGGGATGTTTATTTTAGTTATCCTGCAAGGCCTGATGAACAATTATTCCATGGATTTTCTCTCTCAATACCTAGTGGTGAAACTGCTGCTTTGGTTGGAGAAAGCGGAAGTGGTAAATCAACTGTAATCAGTTTGATTGAGAGATTTTATGACCCCCAAGCTGGGGAAGTTCTTATTGATGGTATTAATCTGAAAGAGTTCCAGCTGAAATGGATCCGACAGAAAATAGGCCTCGTCAGCCAGGAACCTGTTTGGTTTCTGTTAGAACCCTACTCTACATCTTCCACAATTGCACAGAGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

145

Amino Acids

16.13

Weight (kDa)

4.73

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	60 - 127	2.9e-17	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	337, 350
AfiI	CCNNNNNNNGG	3 cut(s)	290, 291, 292
AjnI	CCWGG	1 cut(s)	369
AloI	GAACNNNNNNTCC	2 cut(s)	159, 191
AluBI	AGCT	3 cut(s)	26, 290, 334
AluI	AGCT	3 cut(s)	26, 290, 334
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	2 cut(s)	337, 350
AoxI	GGCC	2 cut(s)	158, 358
ApeKI	GCWGC	5 cut(s)	14, 26, 29, 94, 215
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	218
BamHI	GGATCC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	13, 41, 106, 202
BccI	CCATC	2 cut(s)	115, 302
BciT130I	CCWGG	1 cut(s)	371
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	5 cut(s)	15, 27, 30, 95, 216
BlsI	GCNGC	5 cut(s)	16, 28, 31, 96, 217
Bme1390I	CCNGG	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	344, 375
BmrFI	CCNGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	64
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 291, 292
BseBI	CCWGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	3 cut(s)	290, 291, 292
BseMII	CTCAG	1 cut(s)	119
BseXI	GCAGC	4 cut(s)	13, 41, 106, 202
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	160, 360
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	290, 291, 292
BsmAI	GTCTC	1 cut(s)	41
BsmBI	CGTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	160, 360
Bsp143I	GATC	1 cut(s)	342
Bsp19I	CCATGG	1 cut(s)	178
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	2 cut(s)	160, 360
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	344, 375
BspMAI	CTGCAG	1 cut(s)	31
BspPI	GGATC	2 cut(s)	337, 350
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	371
Bst4CI	ACNGT	1 cut(s)	253
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	178
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 366
BstNI	CCWGG	1 cut(s)	371
BstSCI	CCNGG	1 cut(s)	369
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	4 cut(s)	13, 41, 106, 202
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
BsuRI	GGCC	2 cut(s)	160, 360
BtgI	CCRYGG	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	139
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	8 cut(s)	26, 32, 64, 160, 290, 334, 360, 369
CviKI_1	RGCY	8 cut(s)	26, 32, 64, 160, 290, 334, 360, 369
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	178
Eco147I	AGGCCT	2 cut(s)	160, 360
EcoRII	CCWGG	1 cut(s)	369
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
Esp3I	CGTCTC	1 cut(s)	41
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	36, 71, 81, 110, 180, 279
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	5 cut(s)	15, 27, 30, 95, 216
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	5 cut(s)	15, 27, 30, 95, 216
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	5 cut(s)	15, 27, 30, 95, 216
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	2 cut(s)	160, 360
HapII	CCGG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	182
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	321, 347
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	4 cut(s)	8, 29, 155, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 366
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	1 cut(s)	342
Lsp1109I	GCAGC	4 cut(s)	13, 41, 106, 202
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	1 cut(s)	402
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	342
MluCI	AATT	2 cut(s)	170, 417
MmeI	TCCRAC	2 cut(s)	205, 370
MnlI	CCTC	2 cut(s)	123, 371
MroXI	GAANNNNTTC	1 cut(s)	326
MseI	TTAA	2 cut(s)	54, 315
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	371
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 366
NcoI	CCATGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	2 cut(s)	344, 375
PceI	AGGCCT	2 cut(s)	160, 360
PdmI	GAANNNNTTC	1 cut(s)	326
PkrI	GCNGC	5 cut(s)	16, 28, 31, 96, 217
Ppu21I	YACGTR	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	369
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	344, 375
PstI	CTGCAG	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	342
PvuII	CAGCTG	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	54, 315
SatI	GCNGC	5 cut(s)	15, 27, 30, 95, 216
Sau3AI	GATC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	371
SetI	ASST	6 cut(s)	28, 115, 202, 292, 336, 379
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	170, 417
SseBI	AGGCCT	2 cut(s)	160, 360
SsiI	CCGC	1 cut(s)	234
SspMI	CTAG	1 cut(s)	201
StuI	AGGCCT	2 cut(s)	160, 360
StyD4I	CCNGG	1 cut(s)	369
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	1 cut(s)	115
TasI	AATT	2 cut(s)	170, 417
Tru1I	TTAA	2 cut(s)	54, 315
Tru9I	TTAA	2 cut(s)	54, 315
TseI	GCWGC	5 cut(s)	14, 26, 29, 94, 215
TspDTI	ATGAA	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	315
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.