Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Reverse (-)

19281687 .. 19283864

Gene Structure 2178 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGCTCAGTAGAGTGTCGAAACTCGAGGCTTTGACGCGATACTGTGGTATTTGTCATCGAAAGAAATTCCGAAGAAAGGAAAACAATAGAAGCTCTTGCGTTGTTGGGATTGGGGGAAGAGAAGAAGAGGTTTTTCATCAGAGGTTTTATGCAAAGGAGTATTTGGGTTGTTCTTTTGCCAGTGTTCCTGGTTTGGTTGCATCATTTACAGGGGAGAAACAAGCTATAACTAAGTACAACAACTCTATAACTAAAGCTTACAAGTCTGGTGTGCAAGAGGGTTTGGCATCTGGGTTGGGTATCGGTTCAGTTATGCTTATTATCTTCTGTAGTTATACTTTGGCTATATGGTATGGCGGAAAAATGATACTTGAAAAGGGATATAAAGGAGGAGATGTCATGAATGTAGTTTTTGCTGTGTTGACCGGCTCCTTGTCTCTTGGGCAGACATCTCCATGCTTGGCCGCATTTGCTTCTGGGAAAGCTGCAGCTTACAAGATGTTTGAGACAATTAGCAGAAACCCGGAGATAGATGCTTCTGATACTAAAGGGAAGCAATTACAAGATATTAAAGGAGACATAGAACTGAGGGATGTTCATTTTAGTTATCCTGCAAGACCAGATGAACATATATTCCGTGGATTTTCTCTCACAATACCTAGTGGTGCAACTGCTGCTTTGGTAGGAGAGAGCGGAAGTGGTAAATCGACTGTAATCAGTTTGATTGAGAGATTTTATGACCAACAGGCTGGTGAAGTTCTTATTGACAGTGTCAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGTCTTCTCAGCCAGGAACCTGTATTGTTTACTTGCAGCATTAGAGATAATATTGGCTATGGGAAGGATGGTGCAACTACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCTGCTAAATTCATAGACAAACTTCCTCAGATGGTCGACTTCGGCATGCTTTCATTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

330

Amino Acids

36.03

Weight (kDa)

8.82

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	66 - 145	5.4e-12	ABC transporter transmembrane region
ABC_tran	PF00005	213 - 311	4.5e-17	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	693
AccI	GTMKAC	1 cut(s)	966
AccII	CGCG	1 cut(s)	37
AciI	CCGC	3 cut(s)	357, 465, 693
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	65, 938
AcuI	CTGAAG	1 cut(s)	918
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	76
AgsI	TTSAA	1 cut(s)	374
AjnI	CCWGG	2 cut(s)	187, 828
AloI	GAACNNNNNNTCC	2 cut(s)	618, 650
AluBI	AGCT	7 cut(s)	93, 224, 257, 485, 491, 793, 922
AluI	AGCT	7 cut(s)	93, 224, 257, 485, 491, 793, 922
Alw26I	GTCTC	3 cut(s)	441, 500, 570
AlwI	GGATC	1 cut(s)	809
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	7 cut(s)	485, 488, 674, 852, 911, 914, 932
ApoI	RAATTY	2 cut(s)	65, 938
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	764
AvaI	CYCGRG	1 cut(s)	23
BaeI	ACNNNNGTAYC	2 cut(s)	31, 64
BbsI	GAAGAC	1 cut(s)	812
BbvI	GCAGC	7 cut(s)	472, 500, 661, 864, 898, 901, 919
BccI	CCATC	2 cut(s)	878, 955
BciT130I	CCWGG	2 cut(s)	189, 830
BcnI	CCSGG	1 cut(s)	524
BcoDI	GTCTC	3 cut(s)	441, 500, 570
BfaI	CTAG	1 cut(s)	660
BfmI	CTRYAG	2 cut(s)	328, 486
BisI	GCNGC	8 cut(s)	465, 486, 489, 675, 853, 912, 915, 933
BlpI	GCTNAGC	1 cut(s)	918
BlsI	GCNGC	8 cut(s)	466, 487, 490, 676, 854, 913, 916, 934
Bme1390I	CCNGG	3 cut(s)	189, 524, 830
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	430, 834
BmrFI	CCNGG	3 cut(s)	189, 524, 830
BmsI	GCATC	3 cut(s)	209, 296, 523
BpiI	GAAGAC	1 cut(s)	812
Bpu1102I	GCTNAGC	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	637
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	2 cut(s)	189, 830
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	2 cut(s)	598, 889
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	5 cut(s)	19, 578, 838, 909, 971
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	1 cut(s)	405
BseXI	GCAGC	7 cut(s)	472, 500, 661, 864, 898, 901, 919
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	426, 524
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	3 cut(s)	441, 500, 570
BsnI	GGCC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	801
Bsp1720I	GCTNAGC	1 cut(s)	918
BspACI	CCGC	3 cut(s)	357, 465, 693
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	5 cut(s)	18, 579, 837, 910, 970
BspFNI	CGCG	1 cut(s)	37
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	2 cut(s)	430, 834
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	809
BsrBI	CCGCTC	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	1 cut(s)	801
Bst2UI	CCWGG	2 cut(s)	189, 830
Bst4CI	ACNGT	3 cut(s)	44, 712, 770
Bst6I	CTCTTC	2 cut(s)	112, 120
BstAPI	GCANNNNNTGC	1 cut(s)	674
BstC8I	GCNNGC	2 cut(s)	924, 977
BstDEI	CTNAG	7 cut(s)	5, 231, 587, 824, 918, 957, 990
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	2 cut(s)	598, 889
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	804
BstMAI	GTCTC	3 cut(s)	441, 500, 570
BstMBI	GATC	1 cut(s)	801
BstMWI	GCNNNNNNNGC	4 cut(s)	470, 674, 923, 932
BstNI	CCWGG	2 cut(s)	189, 830
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	3 cut(s)	187, 522, 828
BstSFI	CTRYAG	2 cut(s)	328, 486
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	7 cut(s)	472, 500, 661, 864, 898, 901, 919
BstV2I	GAAGAC	1 cut(s)	812
BstXI	CCANNNNNNTGG	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	598, 889
BtsIMutI	CAGTG	2 cut(s)	187, 775
Cac8I	GCNNGC	2 cut(s)	924, 977
CciI	TCATGA	1 cut(s)	399
Cfr10I	RCCGGY	1 cut(s)	425
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	400, 456, 976
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	7 cut(s)	5, 231, 587, 824, 918, 957, 990
DpnI	GATC	1 cut(s)	803
DpnII	GATC	1 cut(s)	801
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	2 cut(s)	112, 120
EarI	CTCTTC	2 cut(s)	112, 120
EciI	GGCGGA	1 cut(s)	372
Eco57I	CTGAAG	1 cut(s)	918
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	2 cut(s)	187, 828
FaeI	CATG	3 cut(s)	403, 459, 979
FatI	CATG	3 cut(s)	399, 455, 975
FblI	GTMKAC	1 cut(s)	966
Fnu4HI	GCNGC	8 cut(s)	465, 486, 489, 675, 853, 912, 915, 933
FokI	GGATG	2 cut(s)	605, 896
Fsp4HI	GCNGC	8 cut(s)	465, 486, 489, 675, 853, 912, 915, 933
FspBI	CTAG	1 cut(s)	660
GluI	GCNGC	8 cut(s)	465, 486, 489, 675, 853, 912, 915, 933
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	2 cut(s)	426, 524
HgaI	GACGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	403, 459, 979
HincII	GTYRAC	2 cut(s)	423, 967
HindII	GTYRAC	2 cut(s)	423, 967
HindIII	AAGCTT	1 cut(s)	255
HpaII	CCGG	2 cut(s)	426, 524
HphI	GGTGA	1 cut(s)	764
Hpy166II	GTNNAC	3 cut(s)	423, 846, 967
Hpy188I	TCNGA	5 cut(s)	71, 141, 541, 806, 960
Hpy188III	TCNNGA	1 cut(s)	400
Hpy8I	GTNNAC	3 cut(s)	423, 846, 967
HpyAV	CCTTC	1 cut(s)	874
HpyCH4III	ACNGT	3 cut(s)	44, 712, 770
HpyCH4V	TGCA	8 cut(s)	152, 200, 274, 488, 614, 668, 852, 890
HpyF10VI	GCNNNNNNNGC	4 cut(s)	470, 674, 923, 932
HpyF3I	CTNAG	7 cut(s)	5, 231, 587, 824, 918, 957, 990
Hsp92II	CATG	3 cut(s)	403, 459, 979
Kzo9I	GATC	1 cut(s)	801
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	7 cut(s)	472, 500, 661, 864, 898, 901, 919
LweI	GCATC	3 cut(s)	209, 296, 523
MaeI	CTAG	1 cut(s)	660
MalI	GATC	1 cut(s)	803
MbiI	CCGCTC	1 cut(s)	693
MboI	GATC	1 cut(s)	801
MboII	GAAGA	7 cut(s)	84, 129, 134, 137, 316, 812, 911
MluCI	AATT	4 cut(s)	65, 510, 557, 938
MnlI	CCTC	7 cut(s)	19, 121, 135, 271, 383, 582, 966
MseI	TTAA	1 cut(s)	570
MslI	CAYNNNNRTG	1 cut(s)	454
MspA1I	CMGCKG	1 cut(s)	793
MspI	CCGG	2 cut(s)	426, 524
MspR9I	CCNGG	3 cut(s)	189, 524, 830
MvaI	CCWGG	2 cut(s)	189, 830
MvnI	CGCG	1 cut(s)	37
MwoI	GCNNNNNNNGC	4 cut(s)	470, 674, 923, 932
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	1 cut(s)	801
NlaIII	CATG	3 cut(s)	403, 459, 979
NlaIV	GGNNCC	2 cut(s)	430, 834
NspI	RCATGY	1 cut(s)	979
PaeI	GCATGC	1 cut(s)	979
PaeR7I	CTCGAG	1 cut(s)	23
PagI	TCATGA	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	770
PkrI	GCNGC	8 cut(s)	466, 487, 490, 676, 854, 913, 916, 934
Psp6I	CCWGG	2 cut(s)	187, 828
PspGI	CCWGG	2 cut(s)	187, 828
PspN4I	GGNNCC	2 cut(s)	430, 834
PspXI	VCTCGAGB	1 cut(s)	23
PstI	CTGCAG	1 cut(s)	490
PsyI	GACNNNGTC	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	793
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	454
SalI	GTCGAC	1 cut(s)	965
SaqAI	TTAA	1 cut(s)	570
SatI	GCNGC	8 cut(s)	465, 486, 489, 675, 853, 912, 915, 933
Sau3AI	GATC	1 cut(s)	801
ScrFI	CCNGG	3 cut(s)	189, 524, 830
SfaNI	GCATC	3 cut(s)	209, 296, 523
SfcI	CTRYAG	2 cut(s)	328, 486
Sfr274I	CTCGAG	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	23
SmiMI	CAYNNNNRTG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
SphI	GCATGC	1 cut(s)	979
Sse9I	AATT	4 cut(s)	65, 510, 557, 938
SsiI	CCGC	3 cut(s)	357, 465, 693
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	1 cut(s)	660
StyD4I	CCNGG	3 cut(s)	187, 522, 828
TaaI	ACNGT	3 cut(s)	44, 712, 770
TaqI	TCGA	5 cut(s)	17, 24, 58, 707, 966
TasI	AATT	4 cut(s)	65, 510, 557, 938
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	570
Tru9I	TTAA	1 cut(s)	570
TscAI	CASTG	2 cut(s)	187, 775
TseI	GCWGC	7 cut(s)	485, 488, 674, 852, 911, 914, 932
TspDTI	ATGAA	6 cut(s)	125, 416, 587, 639, 931, 972
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	187, 775
Tth111I	GACNNNGTC	1 cut(s)	770
XapI	RAATTY	2 cut(s)	65, 938
XceI	RCATGY	1 cut(s)	979
XhoI	CTCGAG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	966
XspI	CTAG	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.