Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018095

Physical Location & Seq

Genomic Coordinates Forward (+)

55713417 .. 55714896

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG297800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGTCTTGCTGGATGATCACTGGAGAGAGACAGGCTGCACGAATACGAAGTTTATACTTGAAAACCATACTAAGGCAAGATGTCGGCTTCTTTGATCAAGAAATCAACTCTGGGGAAATTGTTGGAAGGATGTCAGGTGATACTGTGCTCATTCAAGAGGCGATGGGTGAGAAAGTAGGAAGTTTTATCCAGTTAGTTGCAACGTTCATAGGTGGCTTTGGTATAGCATTTTTTAAGGGATCACTTCTCACCCTTGTCATGCTATCCTCTATTCCCCCTCTAGTCTTATCTACTGCTGTCCTGAACCATTTCATAGTCAAATTGGCGTCCCATGGACAAGCTGCAAATTCAGGAGGAGCAAATGTGGTAGAGGAGACAATTAGTTCAATAAGAACTGTTGCATCATTCACAGGGGAGAAGCAAGCTATATCTAACTATAACTCCTCCTTAAGTAGAGCTTACAAGTCTGGTGTGCAAGAGGGTTGGGCATCTGGTTTGGGTCTCGGTGTGGTTATGCTTATGGTATTCTCTACTTTCGCTTTGGCTATATGGTTTGGCGGAATAATGATACTTGAAAAAGGATATCAAGGAGGAGATGTCATCAATGTGATTATGGCTGTGTTGCTTGGCTCAGTGTCGCTTGGGAAAGCATCTCCTTGCATTAGTGCATTTGCTCCTGGACAAGCTGCAGCATATAAGATGTTTGAGACAATTAACAGAAAGCCGGAGATAGATGCATACAATACTAATGGGCGGGTATTACAAGATATTCGTGGAGACATAGAACTGAGGGATGTTTATTTCAGCTACCCCGCAAGAAAGGATGAGCAAATATTCCATGGATTTTGTCTCTCTGTACCTAGTGGTGCAACTGCTGCTTTGGTTGGACAGAGTGGAAGTGGTAAATCGACTGTAATCAGTTTGATTGAGAGATTTTATGACCCACAGGCTGGTGAAGTTCTTATTGACGGTATCAATCTCAAAGAGTTCCAGCTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTTTTGTTTACCGGTAGCATTAAAGATAACATTGCCCATGGAAAGGATAGTGCAACTACTGAAGAAATAAGGGCTGCTGCTGAGCTTGCCAATGCAGCTAAATTCATAGATTTATTACCCCCCCAGGAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009914 GO:0009926 GO:0009966 GO:0010315 GO:0010329 GO:0010540 GO:0010646 GO:0010817 GO:0010928 GO:0015562 GO:0016020 GO:0022857 GO:0023051 GO:0030054 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0080161

KEGG Pathways

Metabolic & Signaling

ko02010 ko04976 ko05206 ko05226 map02010 map04976 map05206 map05226

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

390

Amino Acids

41.97

Weight (kDa)

5.91

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	2 - 212	1.8e-47	ABC transporter transmembrane region
ABC_tran	PF00005	282 - 377	3.4e-17	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018095)

Species	Orthologous Gene IDs
malus_domestica	MD13G1138900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0146391 RchiOBHm_Chr4g0410931 RchiOBHm_Chr5g0019431 RchiOBHm_Chr5g0083761
rosa_multiflora	Rmu_sc0019984.1_g000001 Rmu_sc0021736.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015500 Rroxscaffold_1G00064440
rosa_samantha	Rh4AG163600 Rh4CG297800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	950
AciI	CCGC	3 cut(s)	558, 754, 813
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	2 cut(s)	247, 1010
AcsI	RAATTY	3 cut(s)	346, 1139, 1166
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	1 cut(s)	326
AfaI	GTAC	1 cut(s)	858
AfiI	CCNNNNNNNGG	3 cut(s)	72, 950, 1081
AflII	CTTAAG	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	1049
AgsI	TTSAA	4 cut(s)	61, 155, 387, 575
AjnI	CCWGG	3 cut(s)	676, 1029, 1161
AluBI	AGCT	8 cut(s)	341, 425, 458, 686, 807, 994, 1123, 1136
AluI	AGCT	8 cut(s)	341, 425, 458, 686, 807, 994, 1123, 1136
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	6 cut(s)	22, 368, 506, 701, 771, 854
AlwI	GGATC	2 cut(s)	247, 1010
AoxI	GGCC	1 cut(s)	1018
ApeKI	GCWGC	8 cut(s)	35, 341, 686, 689, 875, 1112, 1115, 1133
ApoI	RAATTY	3 cut(s)	346, 1139, 1166
AsiGI	ACCGGT	1 cut(s)	1049
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	149, 179, 241, 965
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	8 cut(s)	22, 328, 673, 701, 862, 1099, 1102, 1145
BccI	CCATC	1 cut(s)	157
BciT130I	CCWGG	3 cut(s)	678, 1031, 1163
BclI	TGATCA	2 cut(s)	15, 94
BcoDI	GTCTC	6 cut(s)	22, 368, 506, 701, 771, 854
BfaI	CTAG	2 cut(s)	281, 861
BfmI	CTRYAG	1 cut(s)	687
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	8 cut(s)	36, 342, 687, 690, 876, 1113, 1116, 1134
BlpI	GCTNAGC	1 cut(s)	1119
BlsI	GCNGC	8 cut(s)	37, 343, 688, 691, 877, 1114, 1117, 1135
Bme1390I	CCNGG	3 cut(s)	678, 1031, 1163
BmiI	GGNNCC	1 cut(s)	1035
BmrFI	CCNGG	3 cut(s)	678, 1031, 1163
BmsI	GCATC	4 cut(s)	410, 497, 659, 724
BpmI	CTGGAG	1 cut(s)	42
Bpu1102I	GCTNAGC	1 cut(s)	1119
BsaHI	GRCGYC	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	4 cut(s)	331, 838, 1075, 1161
BsaWI	WCCGGW	1 cut(s)	1049
BsaXI	ACNNNNNCTCC	6 cut(s)	348, 378, 425, 455, 582, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 950, 1081
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	3 cut(s)	25, 190, 1037
Bse3DI	GCAATG	1 cut(s)	1068
BseBI	CCWGG	3 cut(s)	678, 1031, 1163
BseDI	CCNNGG	4 cut(s)	331, 838, 1075, 1161
BseGI	GGATG	4 cut(s)	18, 135, 799, 829
BseLI	CCNNNNNNNGG	3 cut(s)	72, 950, 1081
BseMI	GCAATG	1 cut(s)	1068
BseMII	CTCAG	3 cut(s)	645, 779, 1110
BseNI	ACTGG	3 cut(s)	25, 190, 1037
BseRI	GAGGAG	4 cut(s)	369, 386, 433, 606
BseXI	GCAGC	8 cut(s)	22, 328, 673, 701, 862, 1099, 1102, 1145
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	1020
BshTI	ACCGGT	1 cut(s)	1049
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	725, 1050
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	3 cut(s)	72, 950, 1081
BsmAI	GTCTC	6 cut(s)	22, 368, 506, 701, 771, 854
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	1 cut(s)	1020
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	15, 94, 239, 1002
Bsp1720I	GCTNAGC	1 cut(s)	1119
Bsp19I	CCATGG	3 cut(s)	331, 838, 1075
BspACI	CCGC	3 cut(s)	558, 754, 813
BspANI	GGCC	1 cut(s)	1020
BspCNI	CTCAG	3 cut(s)	644, 780, 1111
BspLI	GGNNCC	1 cut(s)	1035
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	2 cut(s)	247, 1010
BspTI	CTTAAG	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	1068
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	3 cut(s)	25, 190, 1037
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	4 cut(s)	331, 838, 1075, 1161
BssMI	GATC	4 cut(s)	15, 94, 239, 1002
BssNI	GRCGYC	1 cut(s)	326
BssT1I	CCWWGG	3 cut(s)	331, 838, 1075
Bst2UI	CCWGG	3 cut(s)	678, 1031, 1163
Bst4CI	ACNGT	4 cut(s)	145, 397, 913, 971
BstACI	GRCGYC	1 cut(s)	326
BstAFI	CTTAAG	1 cut(s)	448
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	2 cut(s)	423, 1125
BstDEI	CTNAG	4 cut(s)	71, 631, 788, 1119
BstDSI	CCRYGG	3 cut(s)	331, 838, 1075
BstF5I	GGATG	4 cut(s)	18, 135, 799, 829
BstKTI	GATC	4 cut(s)	18, 97, 242, 1005
BstMAI	GTCTC	6 cut(s)	22, 368, 506, 701, 771, 854
BstMBI	GATC	4 cut(s)	15, 94, 239, 1002
BstMWI	GCNNNNNNNGC	4 cut(s)	875, 1026, 1124, 1133
BstNI	CCWGG	3 cut(s)	678, 1031, 1163
BstSCI	CCNGG	3 cut(s)	676, 1029, 1161
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	8 cut(s)	22, 328, 673, 701, 862, 1099, 1102, 1145
BsuRI	GGCC	1 cut(s)	1020
BtgI	CCRYGG	3 cut(s)	331, 838, 1075
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	4 cut(s)	18, 135, 799, 829
BtsIMutI	CAGTG	2 cut(s)	18, 639
Cac8I	GCNNGC	2 cut(s)	423, 1125
Cfr10I	RCCGGY	1 cut(s)	1049
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	857
CspAI	ACCGGT	1 cut(s)	1049
CviAII	CATG	4 cut(s)	259, 332, 839, 1076
CviQI	GTAC	1 cut(s)	857
DdeI	CTNAG	4 cut(s)	71, 631, 788, 1119
DpnI	GATC	4 cut(s)	17, 96, 241, 1004
DpnII	GATC	4 cut(s)	15, 94, 239, 1002
EciI	GGCGGA	1 cut(s)	573
Eco130I	CCWWGG	3 cut(s)	331, 838, 1075
Eco147I	AGGCCT	1 cut(s)	1020
Eco31I	GGTCTC	1 cut(s)	506
Eco32I	GATATC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	1119
EcoRII	CCWGG	3 cut(s)	676, 1029, 1161
EcoRV	GATATC	1 cut(s)	584
EcoT14I	CCWWGG	3 cut(s)	331, 838, 1075
EcoT22I	ATGCAT	1 cut(s)	739
ErhI	CCWWGG	3 cut(s)	331, 838, 1075
FaeI	CATG	4 cut(s)	262, 335, 842, 1079
FalI	AAGNNNNNCTT	2 cut(s)	442, 474
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	4 cut(s)	258, 331, 838, 1075
FauI	CCCGC	2 cut(s)	747, 820
FbaI	TGATCA	2 cut(s)	15, 94
Fnu4HI	GCNGC	8 cut(s)	36, 342, 687, 690, 876, 1113, 1116, 1134
FokI	GGATG	4 cut(s)	25, 142, 806, 836
Fsp4HI	GCNGC	8 cut(s)	36, 342, 687, 690, 876, 1113, 1116, 1134
FspBI	CTAG	2 cut(s)	281, 861
GluI	GCNGC	8 cut(s)	36, 342, 687, 690, 876, 1113, 1116, 1134
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	1020
HapII	CCGG	2 cut(s)	725, 1050
HgaI	GACGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	326
Hin1II	CATG	4 cut(s)	262, 335, 842, 1079
HpaII	CCGG	2 cut(s)	725, 1050
HphI	GGTGA	4 cut(s)	149, 179, 241, 965
Hpy166II	GTNNAC	1 cut(s)	1047
Hpy188I	TCNGA	1 cut(s)	1007
Hpy188III	TCNNGA	4 cut(s)	98, 155, 301, 351
Hpy8I	GTNNAC	1 cut(s)	1047
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	4 cut(s)	145, 397, 913, 971
HpyCH4IV	ACGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	4 cut(s)	875, 1026, 1124, 1133
HpyF3I	CTNAG	4 cut(s)	71, 631, 788, 1119
HpySE526I	ACGT	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	326
Hsp92II	CATG	4 cut(s)	262, 335, 842, 1079
Ksp22I	TGATCA	2 cut(s)	15, 94
Kzo9I	GATC	4 cut(s)	15, 94, 239, 1002
LmnI	GCTCC	2 cut(s)	356, 679
Lsp1109I	GCAGC	8 cut(s)	22, 328, 673, 701, 862, 1099, 1102, 1145
LweI	GCATC	4 cut(s)	410, 497, 659, 724
MaeI	CTAG	2 cut(s)	281, 861
MaeII	ACGT	1 cut(s)	203
MalI	GATC	4 cut(s)	17, 96, 241, 1004
MboI	GATC	4 cut(s)	15, 94, 239, 1002
MboII	GAAGA	1 cut(s)	1112
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	7 cut(s)	117, 320, 346, 378, 711, 1139, 1166
MmeI	TCCRAC	2 cut(s)	103, 865
MnlI	CCTC	9 cut(s)	151, 277, 288, 347, 364, 454, 472, 584, 783
Mph1103I	ATGCAT	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	4 cut(s)	234, 449, 714, 1059
MslI	CAYNNNNRTG	1 cut(s)	605
MspA1I	CMGCKG	1 cut(s)	994
MspCI	CTTAAG	1 cut(s)	448
MspI	CCGG	2 cut(s)	725, 1050
MspR9I	CCNGG	3 cut(s)	678, 1031, 1163
MvaI	CCWGG	3 cut(s)	678, 1031, 1163
MwoI	GCNNNNNNNGC	4 cut(s)	875, 1026, 1124, 1133
NcoI	CCATGG	3 cut(s)	331, 838, 1075
NdeII	GATC	4 cut(s)	15, 94, 239, 1002
NlaIII	CATG	4 cut(s)	262, 335, 842, 1079
NlaIV	GGNNCC	1 cut(s)	1035
NsiI	ATGCAT	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	1020
PdmI	GAANNNNTTC	1 cut(s)	308
PflMI	CCANNNNNTGG	1 cut(s)	950
PfoI	TCCNGGA	1 cut(s)	676
PinAI	ACCGGT	1 cut(s)	1049
PkrI	GCNGC	8 cut(s)	37, 343, 688, 691, 877, 1114, 1117, 1135
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	3 cut(s)	676, 1029, 1161
PspGI	CCWGG	3 cut(s)	676, 1029, 1161
PspN4I	GGNNCC	1 cut(s)	1035
PstI	CTGCAG	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	994
RsaI	GTAC	1 cut(s)	858
RsaNI	GTAC	1 cut(s)	857
RseI	CAYNNNNRTG	1 cut(s)	605
SaqAI	TTAA	4 cut(s)	234, 449, 714, 1059
SatI	GCNGC	8 cut(s)	36, 342, 687, 690, 876, 1113, 1116, 1134
Sau3AI	GATC	4 cut(s)	15, 94, 239, 1002
ScrFI	CCNGG	3 cut(s)	678, 1031, 1163
SduI	GDGCHC	1 cut(s)	150
SfaNI	GCATC	4 cut(s)	410, 497, 659, 724
SfcI	CTRYAG	1 cut(s)	687
SmiMI	CAYNNNNRTG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	448
SmoI	CTYRAG	1 cut(s)	448
Sse9I	AATT	7 cut(s)	117, 320, 346, 378, 711, 1139, 1166
SseBI	AGGCCT	1 cut(s)	1020
SsiI	CCGC	3 cut(s)	558, 754, 813
SspI	AATATT	1 cut(s)	834
SspMI	CTAG	2 cut(s)	281, 861
StuI	AGGCCT	1 cut(s)	1020
StyD4I	CCNGG	3 cut(s)	676, 1029, 1161
StyI	CCWWGG	3 cut(s)	331, 838, 1075
TaaI	ACNGT	4 cut(s)	145, 397, 913, 971
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	908
TasI	AATT	7 cut(s)	117, 320, 346, 378, 711, 1139, 1166
Tru1I	TTAA	4 cut(s)	234, 449, 714, 1059
Tru9I	TTAA	4 cut(s)	234, 449, 714, 1059
TscAI	CASTG	2 cut(s)	25, 639
TseI	GCWGC	8 cut(s)	35, 341, 686, 689, 875, 1112, 1115, 1133
TspDTI	ATGAA	3 cut(s)	196, 301, 1132
TspRI	CASTG	2 cut(s)	25, 639
Van91I	CCANNNNNTGG	1 cut(s)	950
Vha464I	CTTAAG	1 cut(s)	448
XapI	RAATTY	3 cut(s)	346, 1139, 1166
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	2 cut(s)	281, 861
Zsp2I	ATGCAT	1 cut(s)	739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.